Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 110.99927 * 2 1 4 4 C 1.50697 * 109.47012 * 66.04468 * 3 2 1 5 5 N 1.31072 * 126.66368 * 269.68382 * 4 3 2 6 6 N 1.28838 * 107.99272 * 179.89815 * 5 4 3 7 7 N 1.28738 * 109.39852 * 0.37773 * 6 5 4 8 8 N 1.29027 * 108.80791 * 359.76656 * 7 6 5 9 9 C 1.46499 * 126.43911 * 179.97438 * 8 7 6 10 10 C 1.46899 * 111.00230 * 236.04759 * 2 1 3 11 11 H 1.08994 * 110.88724 * 67.83449 * 10 2 1 12 12 C 1.55159 * 111.00153 * 303.95498 * 10 2 1 13 13 C 1.54322 * 102.94219 * 206.38852 * 12 10 2 14 14 N 1.47027 * 107.27286 * 22.18709 * 13 12 10 15 15 C 1.34775 * 125.64940 * 181.02285 * 14 13 12 16 16 O 1.21276 * 119.99984 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00022 * 0.03083 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31634 * 120.00298 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99884 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99830 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99545 * 23 21 19 27 27 C 1.47419 * 108.70258 * 1.29357 * 14 13 12 28 28 H 1.08994 * 109.46883 * 183.95254 * 1 2 3 29 29 H 1.08996 * 109.46935 * 303.95495 * 1 2 3 30 30 H 1.09004 * 109.46739 * 63.95258 * 1 2 3 31 31 H 1.09001 * 109.46864 * 186.04478 * 3 2 1 32 32 H 1.08994 * 109.46950 * 306.04098 * 3 2 1 33 33 H 1.08994 * 109.47132 * 270.02756 * 9 8 7 34 34 H 1.09000 * 109.46952 * 30.02490 * 9 8 7 35 35 H 1.08997 * 109.46847 * 150.02215 * 9 8 7 36 36 H 1.08992 * 110.72319 * 88.02075 * 12 10 2 37 37 H 1.09007 * 110.71682 * 324.74594 * 12 10 2 38 38 H 1.09003 * 109.88209 * 262.77342 * 13 12 10 39 39 H 1.08996 * 110.01480 * 141.67956 * 13 12 10 40 40 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 41 41 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 42 42 H 0.96995 * 120.00138 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.37402 * 94.47618 * 27 14 13 44 44 H 1.09001 * 110.36815 * 216.80229 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 7 0.5563 2.7472 1.5441 6 7 0.6157 3.1557 2.7646 7 7 1.7099 2.7411 3.3015 8 7 2.3669 2.0539 2.4292 9 6 3.6641 1.4037 2.6314 10 6 1.9955 -0.7659 -1.1376 11 1 1.7761 -0.2632 -2.0794 12 6 1.4395 -2.2145 -1.1377 13 6 2.5358 -3.0055 -1.8819 14 7 3.7811 -2.2311 -1.7756 15 6 4.9683 -2.5751 -2.3130 16 8 5.9337 -1.8570 -2.1607 17 6 5.0960 -3.8518 -3.1033 18 16 6.7992 -4.0307 -3.6894 19 6 6.6660 -5.5600 -4.5543 20 1 5.7190 -6.0778 -4.5933 21 6 7.7767 -6.0962 -5.1910 22 7 7.6774 -7.2390 -5.8368 23 14 9.4128 -5.1969 -5.1303 24 1 10.1832 -5.6501 -3.9444 25 1 10.1853 -5.4907 -6.3641 26 1 9.1708 -3.7349 -5.0342 27 6 3.5177 -1.0193 -0.9785 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 4.4629 2.0969 2.3684 34 1 3.7654 1.1124 3.6769 35 1 3.7288 0.5179 1.9995 36 1 0.4940 -2.2646 -1.6776 37 1 1.3228 -2.5828 -0.1184 38 1 2.2610 -3.1234 -2.9301 39 1 2.6676 -3.9844 -1.4210 40 1 4.4197 -3.8197 -3.9575 41 1 4.8390 -4.6995 -2.4682 42 1 8.4537 -7.6138 -6.2814 43 1 3.7685 -1.1917 0.0682 44 1 4.0854 -0.1759 -1.3714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 76.386983 kcal Electronic energy + Delta-G solvation = -26883.831034 eV Core-core repulsion = 22999.853347 eV Total energy + Delta-G solvation = -3883.977686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.24648 -41.18478 -39.41804 -37.22531 -36.60085 -34.66199 -33.96546 -32.23210 -30.99446 -29.64469 -29.40058 -28.51216 -27.83872 -25.47638 -24.57133 -24.15481 -22.64157 -21.28267 -20.73397 -19.59947 -18.49822 -18.32841 -18.08134 -17.75888 -17.11430 -16.81016 -16.40819 -16.32598 -15.92028 -15.57679 -15.32544 -14.88902 -14.77937 -14.58186 -14.51852 -14.38083 -13.97856 -13.77684 -13.47541 -13.37629 -13.32028 -13.26316 -13.00323 -13.00041 -12.73297 -12.61151 -12.43243 -12.20122 -12.00060 -11.86789 -11.86057 -11.81904 -11.18682 -11.15962 -11.00754 -10.52835 -9.71162 -9.58644 -8.99016 -8.50455 -6.21408 0.15297 0.97266 1.04909 1.11992 1.32567 1.46397 1.53710 1.54352 2.02680 2.25759 2.63325 2.70808 2.87819 3.04035 3.21871 3.30623 3.64149 3.78382 3.83741 4.07247 4.15489 4.20473 4.24554 4.26949 4.33256 4.36539 4.39089 4.44539 4.50200 4.59776 4.65464 4.70251 4.76139 4.82643 4.90127 4.98410 5.08079 5.14801 5.19257 5.31491 5.70801 5.71711 5.86075 6.12614 6.34780 6.94660 7.07305 7.49659 8.61733 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002106 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.932760 B =13294.616428 C =14100.497014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.527 5.527 3 C 0.130 3.870 4 C 0.201 3.799 5 N -0.325 5.325 6 N -0.112 5.112 7 N -0.110 5.110 8 N -0.288 5.288 9 C 0.064 3.936 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.110 4.110 13 C 0.091 3.909 14 N -0.614 5.614 15 C 0.551 3.449 16 O -0.560 6.560 17 C -0.104 4.104 18 S -0.174 6.174 19 C -0.528 4.528 20 H 0.062 0.938 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.261 1.261 26 H -0.235 1.235 27 C 0.111 3.889 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.277 0.723 43 H 0.085 0.915 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.731 15.523 14.097 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.253 5.253 3 C 0.000 4.000 4 C -0.078 4.078 5 N -0.176 5.176 6 N -0.106 5.106 7 N -0.097 5.097 8 N -0.090 5.090 9 C -0.075 4.075 10 C -0.028 4.028 11 H 0.094 0.906 12 C -0.148 4.148 13 C -0.031 4.031 14 N -0.349 5.349 15 C 0.339 3.661 16 O -0.439 6.439 17 C -0.255 4.255 18 S 0.052 5.948 19 C -0.675 4.675 20 H 0.080 0.920 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.185 1.185 26 H -0.159 1.159 27 C -0.011 4.011 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.855 16.960 15.447 26.799 hybrid contribution -0.005 -1.175 -1.459 1.873 sum -13.860 15.784 13.989 25.238 Atomic orbital electron populations 1.22464 0.85333 1.03467 1.01213 1.61892 1.09530 1.10978 1.42911 1.20736 1.03150 0.88658 0.87495 1.26128 0.89119 0.99357 0.93218 1.74929 1.19901 1.13826 1.08935 1.78593 1.11412 1.18967 1.01582 1.78824 1.02985 1.09804 1.18095 1.48685 1.19364 1.33382 1.07607 1.22937 0.76880 0.99812 1.07891 1.22766 0.92983 0.94922 0.92172 0.90571 1.22710 0.97781 0.91910 1.02441 1.22350 0.82557 0.96010 1.02206 1.48252 1.08935 1.24835 1.52880 1.19535 0.81808 0.86120 0.78677 1.90688 1.38251 1.53939 1.60996 1.23211 1.00430 0.98876 1.02966 1.84678 1.12476 1.29369 1.68232 1.22445 1.00168 1.06820 1.38098 0.91950 1.25576 1.02207 0.95065 0.93251 1.70016 1.32498 1.19100 1.33837 0.85866 0.79767 0.81622 0.79119 1.18706 1.18521 1.15893 1.22364 0.95289 0.87154 0.96332 0.89236 0.92777 0.93800 0.85669 0.89113 0.86298 0.86330 0.85477 0.87579 0.88711 0.90238 0.90245 0.87202 0.87258 0.91405 0.89648 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 127.69 1.16 1.37 16 2 N -0.53 -4.42 4.65 -892.98 -4.15 -8.57 16 3 C 0.13 1.10 5.01 85.55 0.43 1.53 16 4 C 0.20 2.96 6.74 138.13 0.93 3.89 16 5 N -0.32 -7.05 11.57 -50.45 -0.58 -7.63 16 6 N -0.11 -2.80 13.43 37.01 0.50 -2.30 16 7 N -0.11 -2.33 13.29 37.02 0.49 -1.83 16 8 N -0.29 -4.02 3.75 -359.66 -1.35 -5.37 16 9 C 0.06 0.28 11.09 127.77 1.42 1.69 16 10 C 0.08 0.69 2.72 46.39 0.13 0.82 16 11 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 12 C -0.11 -0.82 5.09 31.78 0.16 -0.66 16 13 C 0.09 1.22 6.48 86.73 0.56 1.78 16 14 N -0.61 -12.63 3.32 -811.36 -2.70 -15.33 16 15 C 0.55 17.42 7.87 87.66 0.69 18.11 16 16 O -0.56 -22.01 16.12 -3.02 -0.05 -22.06 16 17 C -0.10 -3.70 5.35 71.24 0.38 -3.32 16 18 S -0.17 -8.46 18.55 -56.49 -1.05 -9.50 16 19 C -0.53 -29.84 10.04 67.95 0.68 -29.16 16 20 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 21 C 0.04 2.55 5.50 84.86 0.47 3.01 16 22 N -0.92 -54.71 13.97 21.65 0.30 -54.40 16 23 Si 0.91 43.80 27.74 68.60 1.90 45.70 16 24 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.24 -11.17 6.74 99.48 0.67 -10.50 16 27 C 0.11 1.56 5.63 86.94 0.49 2.05 16 28 H 0.09 0.60 6.99 -2.39 -0.02 0.59 16 29 H 0.05 0.76 6.56 -2.39 -0.02 0.74 16 30 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.13 0.58 6.62 -2.39 -0.02 0.56 16 32 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.13 0.19 7.75 -2.39 -0.02 0.17 16 36 H 0.11 0.43 8.10 -2.39 -0.02 0.41 16 37 H 0.09 0.68 8.09 -2.38 -0.02 0.66 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 41 H 0.11 3.60 8.14 -2.40 -0.02 3.59 16 42 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.14 7.71 -2.39 -0.02 1.12 16 Total: -1.00 -80.37 377.54 1.79 -78.58 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 0.97 Total: 1.61 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 7.50 Total: 1.11 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -7.49 Total: -95.44 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.90 Total: 45.70 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.50 kcal Total: -80.37 1.79 -78.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.967 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds