Wall clock time and date at job start Sat Apr 11 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99760 * 2 1 4 4 C 1.50695 * 109.47404 * 293.95400 * 3 2 1 5 5 O 1.21290 * 119.99870 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00086 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99704 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00383 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99775 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00139 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99903 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00393 * 11 9 7 13 13 H 1.48500 * 109.46906 * 209.99845 * 11 9 7 14 14 H 1.48495 * 109.47526 * 330.00029 * 11 9 7 15 15 C 1.46902 * 110.99991 * 123.95374 * 2 1 3 16 16 H 1.09002 * 110.88801 * 292.16318 * 15 2 1 17 17 C 1.55157 * 111.03579 * 168.26421 * 15 2 1 18 18 C 1.54319 * 102.86297 * 206.21737 * 17 15 2 19 19 N 1.47019 * 107.27328 * 22.52096 * 18 17 15 20 20 C 1.34784 * 125.64691 * 180.97079 * 19 18 17 21 21 O 1.21274 * 119.99897 * 179.42248 * 20 19 18 22 22 C 1.50695 * 119.99635 * 359.69289 * 20 19 18 23 23 H 1.08997 * 110.50861 * 319.29738 * 22 20 19 24 24 C 1.54093 * 110.56564 * 82.04519 * 22 20 19 25 25 O 1.46043 * 103.84570 * 118.52825 * 24 22 20 26 26 C 1.33766 * 109.50810 * 0.12275 * 25 24 22 27 27 O 1.21520 * 123.07180 * 179.88243 * 26 25 24 28 28 N 1.34004 * 113.86404 * 359.91649 * 26 25 24 29 29 C 1.47426 * 108.70639 * 0.70702 * 19 18 17 30 30 H 1.09004 * 109.47500 * 296.04853 * 1 2 3 31 31 H 1.09000 * 109.47317 * 56.04617 * 1 2 3 32 32 H 1.08997 * 109.47457 * 176.04566 * 1 2 3 33 33 H 1.09001 * 109.47360 * 53.95588 * 3 2 1 34 34 H 1.09000 * 109.46964 * 173.95483 * 3 2 1 35 35 H 0.96998 * 120.00060 * 359.97438 * 6 4 3 36 36 H 0.97001 * 120.00548 * 180.02562 * 10 9 7 37 37 H 1.09008 * 110.72167 * 324.77157 * 17 15 2 38 38 H 1.09000 * 110.72309 * 87.86572 * 17 15 2 39 39 H 1.08996 * 109.98024 * 263.04701 * 18 17 15 40 40 H 1.08995 * 109.77652 * 141.88106 * 18 17 15 41 41 H 1.09002 * 110.51567 * 237.20315 * 24 22 20 42 42 H 1.08997 * 110.51973 * 359.93710 * 24 22 20 43 43 H 0.97001 * 125.56743 * 179.97438 * 28 26 25 44 44 H 1.09004 * 110.36214 * 94.93592 * 29 19 18 45 45 H 1.08992 * 110.36838 * 217.14876 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0046 1.4457 -2.1407 6 7 2.0188 3.3200 -1.5236 7 6 1.6921 3.9348 -2.7047 8 1 1.1292 3.3992 -3.4547 9 6 2.0854 5.2471 -2.9367 10 7 1.7728 5.8364 -4.0689 11 14 3.0586 6.1738 -1.6391 12 1 4.5110 5.9609 -1.8637 13 1 2.7508 7.6236 -1.7311 14 1 2.6877 5.6736 -0.2910 15 6 1.9954 -0.7660 1.1376 16 1 1.7760 -0.2632 2.0795 17 6 3.5187 -1.0169 0.9829 18 6 3.7384 -2.3094 1.7969 19 7 2.4436 -3.0014 1.8752 20 6 2.2110 -4.1622 2.5196 21 8 1.0958 -4.6387 2.5270 22 6 3.3355 -4.8647 3.2358 23 1 4.2513 -4.8187 2.6466 24 6 3.5576 -4.2485 4.6305 25 8 3.2966 -5.3551 5.5471 26 6 2.9767 -6.4491 4.8470 27 8 2.7134 -7.5155 5.3667 28 7 2.9738 -6.2619 3.5201 29 6 1.4403 -2.2121 1.1377 30 1 -0.3634 0.4513 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5610 1.9274 0.8309 34 1 3.0796 1.3445 0.1082 35 1 2.5241 3.8012 -0.8498 36 1 2.0476 6.7524 -4.2310 37 1 3.7804 -1.1674 -0.0646 38 1 4.0906 -0.1916 1.4070 39 1 4.0884 -2.0632 2.7994 40 1 4.4676 -2.9434 1.2927 41 1 4.5844 -3.8977 4.7341 42 1 2.8550 -3.4335 4.8044 43 1 2.7674 -6.9376 2.8555 44 1 1.3432 -2.5813 0.1167 45 1 0.4778 -2.2508 1.6475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189931886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:49 Heat of formation + Delta-G solvation = -104.977216 kcal Electronic energy + Delta-G solvation = -29574.320035 eV Core-core repulsion = 25207.432185 eV Total energy + Delta-G solvation = -4366.887850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32393 -40.45467 -39.03753 -38.01648 -37.54478 -35.79004 -35.20121 -33.97705 -31.76728 -31.68586 -30.47903 -29.29778 -27.75756 -26.00748 -24.96680 -23.66734 -23.01775 -22.89732 -20.60934 -20.14432 -19.42505 -18.72200 -18.36570 -18.34398 -17.56739 -17.01042 -16.68321 -16.10271 -15.87456 -15.29944 -15.08725 -14.96939 -14.78875 -14.73912 -14.38674 -14.19029 -14.10844 -13.86349 -13.47882 -13.30071 -13.13675 -13.05511 -12.76214 -12.55722 -12.30964 -11.98874 -11.69928 -11.46849 -11.37444 -11.27867 -11.18952 -11.14942 -11.02760 -10.84008 -10.66717 -10.04530 -9.84139 -9.61491 -9.21541 -8.70378 -8.26382 -8.14041 -6.37625 -3.89485 1.80173 1.91323 2.19596 2.39378 2.95349 2.95609 2.99914 3.09233 3.38827 3.57481 3.64295 3.70039 3.97219 4.03421 4.15941 4.19633 4.36380 4.54575 4.56742 4.68002 4.72258 4.85185 4.93115 5.04019 5.14518 5.32901 5.39517 5.46625 5.52618 5.58071 5.61735 5.69424 5.76042 5.83186 5.88620 6.20260 6.38097 6.65292 6.84140 6.97102 7.10754 7.44505 7.50808 7.58216 8.07277 8.52559 8.88287 9.34996 9.75033 10.75334 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.001940 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.392931 B =14429.342316 C =14949.906131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.506 5.506 3 C 0.043 3.957 4 C 0.451 3.549 5 O -0.558 6.558 6 N -0.590 5.590 7 C -0.305 4.305 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.880 5.880 11 Si 0.880 3.120 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.057 0.943 17 C -0.127 4.127 18 C 0.095 3.905 19 N -0.611 5.611 20 C 0.517 3.483 21 O -0.517 6.517 22 C 0.080 3.920 23 H 0.128 0.872 24 C 0.056 3.944 25 O -0.322 6.322 26 C 0.652 3.348 27 O -0.515 6.515 28 N -0.710 5.710 29 C 0.115 3.885 30 H 0.017 0.983 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.370 0.630 36 H 0.274 0.726 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.441 0.559 44 H 0.087 0.913 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 -14.950 16.888 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.231 5.231 3 C -0.088 4.088 4 C 0.237 3.763 5 O -0.440 6.440 6 N -0.229 5.229 7 C -0.434 4.434 8 H 0.138 0.862 9 C -0.162 4.162 10 N -0.519 5.519 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.196 1.196 15 C -0.042 4.042 16 H 0.075 0.925 17 C -0.165 4.165 18 C -0.028 4.028 19 N -0.347 5.347 20 C 0.302 3.698 21 O -0.391 6.391 22 C -0.030 4.030 23 H 0.146 0.854 24 C -0.019 4.019 25 O -0.232 6.232 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.383 5.383 29 C -0.007 4.007 30 H 0.036 0.964 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.141 0.859 42 H 0.128 0.872 43 H 0.286 0.714 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.253 -16.149 16.446 24.482 hybrid contribution 0.506 1.332 1.079 1.787 sum 8.759 -14.817 17.525 24.564 Atomic orbital electron populations 1.22617 0.86056 1.02502 1.01878 1.61625 1.09071 1.12796 1.39568 1.21906 1.00873 0.88842 0.97200 1.19573 0.85307 0.82514 0.88912 1.90539 1.42605 1.64109 1.46761 1.42206 1.50929 1.11908 1.17865 1.19418 1.33926 0.96321 0.93745 0.86240 1.25047 0.97868 0.96505 0.96739 1.69616 1.45467 1.13648 1.23218 0.86676 0.80885 0.80568 0.81248 1.19584 1.20182 1.19570 1.22794 0.94851 0.93309 0.93231 0.92480 1.22753 0.95662 0.95878 1.02196 1.22229 0.85326 0.94414 1.00835 1.48428 1.12063 1.21978 1.52203 1.20153 0.89722 0.80419 0.79495 1.90805 1.23568 1.64556 1.60218 1.22270 0.98567 0.83708 0.98487 0.85436 1.24296 1.05317 0.89026 0.83291 1.87367 1.82384 1.20207 1.33251 1.18403 0.76279 0.83899 0.81000 1.91111 1.53149 1.22862 1.72793 1.45685 1.74036 1.11063 1.07542 1.22305 0.91652 0.89289 0.97458 0.96409 0.88144 0.91742 0.93210 0.89129 0.79753 0.91560 0.88547 0.89584 0.90932 0.90462 0.85940 0.87162 0.71448 0.89487 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.93 60.06 0.54 0.77 16 2 N -0.51 -6.70 4.40 -233.75 -1.03 -7.72 16 3 C 0.04 0.62 5.36 -4.98 -0.03 0.59 16 4 C 0.45 9.35 7.47 -10.99 -0.08 9.27 16 5 O -0.56 -13.84 13.91 5.55 0.08 -13.77 16 6 N -0.59 -13.07 5.09 -10.97 -0.06 -13.12 16 7 C -0.31 -8.23 10.16 -14.93 -0.15 -8.38 16 8 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 9 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 10 N -0.88 -24.88 13.96 55.50 0.77 -24.10 16 11 Si 0.88 18.38 27.74 -169.99 -4.71 13.66 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 14 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 15 C 0.07 0.62 2.71 -65.57 -0.18 0.44 16 16 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 17 C -0.13 -0.81 5.62 -24.90 -0.14 -0.95 16 18 C 0.10 0.37 6.28 -3.07 -0.02 0.35 16 19 N -0.61 -4.31 3.33 -170.54 -0.57 -4.87 16 20 C 0.52 4.23 6.96 -10.98 -0.08 4.15 16 21 O -0.52 -6.66 16.83 5.56 0.09 -6.56 16 22 C 0.08 0.39 3.54 -68.19 -0.24 0.15 16 23 H 0.13 0.17 7.62 -51.93 -0.40 -0.23 16 24 C 0.06 0.22 7.89 37.73 0.30 0.52 16 25 O -0.32 -2.87 11.10 -37.82 -0.42 -3.29 16 26 C 0.65 6.96 9.16 53.71 0.49 7.45 16 27 O -0.52 -7.61 18.04 -19.12 -0.35 -7.95 16 28 N -0.71 -5.24 5.64 -59.35 -0.33 -5.58 16 29 C 0.12 1.07 5.07 -2.53 -0.01 1.05 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 1.77 5.82 -51.93 -0.30 1.47 16 32 H 0.06 0.79 6.96 -51.93 -0.36 0.43 16 33 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.09 1.06 7.01 -51.93 -0.36 0.69 16 35 H 0.37 7.11 5.76 -40.82 -0.24 6.88 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 38 H 0.09 0.42 7.91 -51.93 -0.41 0.01 16 39 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.08 0.18 7.97 -51.93 -0.41 -0.24 16 41 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.11 0.39 7.72 -51.93 -0.40 -0.01 16 43 H 0.44 2.78 8.96 -40.82 -0.37 2.41 16 44 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 45 H 0.08 0.82 7.92 -51.93 -0.41 0.41 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -37.60 371.73 -6.79 -44.39 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.17 Total: 6.90 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 0.30 Total: 16.42 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -1.21 Total: -55.40 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.59 Total: -31.58 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.71 Total: 13.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.60 -6.79 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189931886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.583 kcal (2) G-P(sol) polarization free energy of solvation -37.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds