Wall clock time and date at job start Sat Apr 11 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99760 * 2 1 4 4 C 1.50695 * 109.47404 * 293.95400 * 3 2 1 5 5 O 1.21290 * 119.99870 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00086 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99704 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00383 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99775 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00139 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99903 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00393 * 11 9 7 13 13 H 1.48500 * 109.46906 * 209.99845 * 11 9 7 14 14 H 1.48495 * 109.47526 * 330.00029 * 11 9 7 15 15 C 1.46902 * 110.99991 * 123.95374 * 2 1 3 16 16 H 1.09002 * 110.88801 * 292.16318 * 15 2 1 17 17 C 1.55157 * 111.03579 * 168.26421 * 15 2 1 18 18 C 1.54319 * 102.86297 * 206.21737 * 17 15 2 19 19 N 1.47019 * 107.27328 * 22.52096 * 18 17 15 20 20 C 1.34784 * 125.64691 * 180.97079 * 19 18 17 21 21 O 1.21274 * 119.99897 * 179.42248 * 20 19 18 22 22 C 1.50695 * 119.99635 * 359.69289 * 20 19 18 23 23 H 1.08997 * 110.50861 * 319.29738 * 22 20 19 24 24 C 1.54093 * 110.56564 * 82.04519 * 22 20 19 25 25 O 1.46043 * 103.84570 * 118.52825 * 24 22 20 26 26 C 1.33766 * 109.50810 * 0.12275 * 25 24 22 27 27 O 1.21520 * 123.07180 * 179.88243 * 26 25 24 28 28 N 1.34004 * 113.86404 * 359.91649 * 26 25 24 29 29 C 1.47426 * 108.70639 * 0.70702 * 19 18 17 30 30 H 1.09004 * 109.47500 * 296.04853 * 1 2 3 31 31 H 1.09000 * 109.47317 * 56.04617 * 1 2 3 32 32 H 1.08997 * 109.47457 * 176.04566 * 1 2 3 33 33 H 1.09001 * 109.47360 * 53.95588 * 3 2 1 34 34 H 1.09000 * 109.46964 * 173.95483 * 3 2 1 35 35 H 0.96998 * 120.00060 * 359.97438 * 6 4 3 36 36 H 0.97001 * 120.00548 * 180.02562 * 10 9 7 37 37 H 1.09008 * 110.72167 * 324.77157 * 17 15 2 38 38 H 1.09000 * 110.72309 * 87.86572 * 17 15 2 39 39 H 1.08996 * 109.98024 * 263.04701 * 18 17 15 40 40 H 1.08995 * 109.77652 * 141.88106 * 18 17 15 41 41 H 1.09002 * 110.51567 * 237.20315 * 24 22 20 42 42 H 1.08997 * 110.51973 * 359.93710 * 24 22 20 43 43 H 0.97001 * 125.56743 * 179.97438 * 28 26 25 44 44 H 1.09004 * 110.36214 * 94.93592 * 29 19 18 45 45 H 1.08992 * 110.36838 * 217.14876 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0046 1.4457 -2.1407 6 7 2.0188 3.3200 -1.5236 7 6 1.6921 3.9348 -2.7047 8 1 1.1292 3.3992 -3.4547 9 6 2.0854 5.2471 -2.9367 10 7 1.7728 5.8364 -4.0689 11 14 3.0586 6.1738 -1.6391 12 1 4.5110 5.9609 -1.8637 13 1 2.7508 7.6236 -1.7311 14 1 2.6877 5.6736 -0.2910 15 6 1.9954 -0.7660 1.1376 16 1 1.7760 -0.2632 2.0795 17 6 3.5187 -1.0169 0.9829 18 6 3.7384 -2.3094 1.7969 19 7 2.4436 -3.0014 1.8752 20 6 2.2110 -4.1622 2.5196 21 8 1.0958 -4.6387 2.5270 22 6 3.3355 -4.8647 3.2358 23 1 4.2513 -4.8187 2.6466 24 6 3.5576 -4.2485 4.6305 25 8 3.2966 -5.3551 5.5471 26 6 2.9767 -6.4491 4.8470 27 8 2.7134 -7.5155 5.3667 28 7 2.9738 -6.2619 3.5201 29 6 1.4403 -2.2121 1.1377 30 1 -0.3634 0.4513 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5610 1.9274 0.8309 34 1 3.0796 1.3445 0.1082 35 1 2.5241 3.8012 -0.8498 36 1 2.0476 6.7524 -4.2310 37 1 3.7804 -1.1674 -0.0646 38 1 4.0906 -0.1916 1.4070 39 1 4.0884 -2.0632 2.7994 40 1 4.4676 -2.9434 1.2927 41 1 4.5844 -3.8977 4.7341 42 1 2.8550 -3.4335 4.8044 43 1 2.7674 -6.9376 2.8555 44 1 1.3432 -2.5813 0.1167 45 1 0.4778 -2.2508 1.6475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189931886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:49 Heat of formation + Delta-G solvation = -139.987195 kcal Electronic energy + Delta-G solvation = -29575.838182 eV Core-core repulsion = 25207.432185 eV Total energy + Delta-G solvation = -4368.405997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.90922 -41.15316 -40.37918 -39.05265 -38.34370 -36.80467 -35.81911 -35.77676 -33.72022 -32.36238 -31.00890 -30.17359 -28.74679 -27.07528 -26.05032 -24.74993 -23.62824 -23.54997 -21.47697 -21.11893 -20.72025 -20.10695 -19.27508 -18.91160 -18.19188 -17.88567 -17.48717 -17.29157 -16.80385 -16.58565 -16.26324 -15.86255 -15.60434 -15.43402 -15.28866 -15.24829 -14.89272 -14.82447 -14.59304 -14.34591 -14.12015 -13.95930 -13.75661 -13.62799 -13.36176 -13.09622 -12.91666 -12.60848 -12.37752 -12.22932 -12.07364 -11.98904 -11.94761 -11.87156 -11.73474 -11.54980 -11.42856 -10.43590 -10.33193 -10.19732 -9.77338 -9.24051 -8.37658 -5.98543 1.21313 1.31191 1.32805 1.39153 1.47964 1.59168 1.76990 2.01253 2.26621 2.50656 2.65696 3.03335 3.11262 3.18575 3.28165 3.54357 3.69259 3.74649 3.99715 4.08913 4.14443 4.30782 4.38125 4.38971 4.40448 4.43978 4.47606 4.58343 4.60450 4.72908 4.84257 4.91421 5.03329 5.14267 5.20257 5.33970 5.56538 5.61195 5.88401 6.00697 6.04672 6.19665 6.34424 6.63757 6.82542 6.92819 6.93243 7.44724 8.03084 8.80038 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.001940 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.392931 B =14429.342316 C =14949.906131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.528 5.528 3 C 0.057 3.943 4 C 0.450 3.550 5 O -0.607 6.607 6 N -0.592 5.592 7 C -0.325 4.325 8 H 0.053 0.947 9 C -0.019 4.019 10 N -0.938 5.938 11 Si 0.966 3.034 12 H -0.255 1.255 13 H -0.280 1.280 14 H -0.228 1.228 15 C 0.071 3.929 16 H 0.076 0.924 17 C -0.125 4.125 18 C 0.091 3.909 19 N -0.605 5.605 20 C 0.514 3.486 21 O -0.577 6.577 22 C 0.088 3.912 23 H 0.178 0.822 24 C 0.052 3.948 25 O -0.339 6.339 26 C 0.649 3.351 27 O -0.571 6.571 28 N -0.704 5.704 29 C 0.116 3.884 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.390 0.610 36 H 0.278 0.722 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.176 0.824 42 H 0.116 0.884 43 H 0.444 0.556 44 H 0.063 0.937 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.299 -13.981 20.620 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.073 4.073 4 C 0.238 3.762 5 O -0.491 6.491 6 N -0.234 5.234 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.217 4.217 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.179 1.179 13 H -0.206 1.206 14 H -0.151 1.151 15 C -0.038 4.038 16 H 0.094 0.906 17 C -0.163 4.163 18 C -0.030 4.030 19 N -0.338 5.338 20 C 0.301 3.699 21 O -0.455 6.455 22 C -0.021 4.021 23 H 0.195 0.805 24 C -0.022 4.022 25 O -0.248 6.248 26 C 0.402 3.598 27 O -0.459 6.459 28 N -0.376 5.376 29 C -0.008 4.008 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.226 0.774 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.193 0.807 42 H 0.134 0.866 43 H 0.288 0.712 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.365 -15.157 20.179 28.104 hybrid contribution -0.867 0.988 -0.234 1.336 sum 11.497 -14.168 19.945 27.032 Atomic orbital electron populations 1.22419 0.87258 1.02198 1.00560 1.61518 1.08349 1.12758 1.42637 1.21825 1.03320 0.88950 0.93243 1.20962 0.82863 0.81753 0.90606 1.90536 1.44138 1.65201 1.49268 1.42021 1.51920 1.12643 1.16837 1.18969 1.34655 0.97009 0.94832 0.92892 1.26155 0.98786 0.97052 0.99698 1.69815 1.47361 1.14352 1.26311 0.85350 0.79090 0.77883 0.79077 1.17881 1.20579 1.15104 1.22852 0.96796 0.91992 0.92162 0.90603 1.22810 0.93284 0.98212 1.01983 1.22579 0.83866 0.93316 1.03222 1.48454 1.12851 1.21519 1.50991 1.20788 0.89782 0.80265 0.79033 1.90792 1.26180 1.66080 1.62488 1.22604 0.98516 0.81540 0.99480 0.80455 1.24852 1.08587 0.87412 0.81331 1.87328 1.82087 1.20765 1.34635 1.18552 0.75820 0.83715 0.81712 1.91055 1.55654 1.25219 1.74010 1.45718 1.72848 1.12472 1.06516 1.22089 0.92040 0.90264 0.96359 0.94730 0.92740 0.91165 0.90349 0.85196 0.77446 0.91283 0.90405 0.86807 0.86683 0.87831 0.80711 0.86620 0.71169 0.91834 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 8.93 127.69 1.14 1.80 16 2 N -0.53 -12.99 4.40 -893.45 -3.93 -16.92 16 3 C 0.06 1.44 5.36 85.55 0.46 1.90 16 4 C 0.45 18.55 7.47 87.66 0.66 19.21 16 5 O -0.61 -31.66 13.91 -3.06 -0.04 -31.71 16 6 N -0.59 -25.87 5.09 -306.99 -1.56 -27.43 16 7 C -0.33 -18.29 10.16 84.04 0.85 -17.44 16 8 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 9 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 10 N -0.94 -55.29 13.96 21.66 0.30 -54.99 16 11 Si 0.97 36.51 27.74 68.60 1.90 38.41 16 12 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 13 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.23 -6.99 6.52 99.48 0.65 -6.34 16 15 C 0.07 1.03 2.71 46.30 0.13 1.15 16 16 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 17 C -0.12 -0.93 5.62 31.78 0.18 -0.75 16 18 C 0.09 0.15 6.28 86.73 0.54 0.70 16 19 N -0.60 -6.39 3.33 -811.84 -2.70 -9.09 16 20 C 0.51 7.08 6.96 87.65 0.61 7.69 16 21 O -0.58 -14.72 16.83 -3.01 -0.05 -14.77 16 22 C 0.09 0.49 3.54 44.50 0.16 0.64 16 23 H 0.18 -0.72 7.62 -2.39 -0.02 -0.73 16 24 C 0.05 0.16 7.89 72.35 0.57 0.73 16 25 O -0.34 -5.27 11.10 -47.27 -0.52 -5.80 16 26 C 0.65 13.34 9.16 129.91 1.19 14.53 16 27 O -0.57 -17.34 18.04 19.62 0.35 -16.99 16 28 N -0.70 -9.17 5.64 -573.40 -3.24 -12.41 16 29 C 0.12 1.97 5.07 86.85 0.44 2.42 16 30 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.05 2.03 5.82 -2.39 -0.01 2.02 16 32 H 0.07 1.80 6.96 -2.39 -0.02 1.79 16 33 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 34 H 0.13 2.31 7.01 -2.39 -0.02 2.29 16 35 H 0.39 13.69 5.76 -92.71 -0.53 13.15 16 36 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.11 0.28 7.91 -2.39 -0.02 0.26 16 39 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.10 -0.25 7.97 -2.39 -0.02 -0.27 16 41 H 0.18 -1.24 8.14 -2.39 -0.02 -1.26 16 42 H 0.12 0.28 7.72 -2.39 -0.02 0.26 16 43 H 0.44 5.21 8.96 -92.71 -0.83 4.38 16 44 H 0.06 1.37 8.11 -2.38 -0.02 1.35 16 45 H 0.06 1.28 7.92 -2.39 -0.02 1.26 16 Total: -1.00 -96.07 371.73 -2.47 -98.54 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.37 Total: 21.10 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 7.39 Total: 32.05 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -11.13 Total: -120.84 kcal Atomic # 8 Polarization: -69.00 SS G_CDS: -0.26 Total: -69.26 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 1.90 Total: 38.41 kcal Total: -96.07 -2.47 -98.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189931886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.448 kcal (2) G-P(sol) polarization free energy of solvation -96.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds