Wall clock time and date at job start Sat Apr 11 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99751 * 2 1 4 4 C 1.50697 * 109.46892 * 66.04220 * 3 2 1 5 5 O 1.21291 * 120.00763 * 359.72740 * 4 3 2 6 6 N 1.34784 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.37092 * 119.99968 * 179.72830 * 6 4 3 8 8 H 1.08005 * 120.00127 * 359.97438 * 7 6 4 9 9 C 1.38955 * 120.00107 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00272 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99631 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47423 * 89.99791 * 11 9 7 13 13 H 1.48505 * 109.46968 * 209.99733 * 11 9 7 14 14 H 1.48504 * 109.47133 * 329.99196 * 11 9 7 15 15 C 1.46898 * 111.00023 * 236.04974 * 2 1 3 16 16 H 1.08998 * 110.88995 * 67.83178 * 15 2 1 17 17 C 1.55159 * 111.00110 * 191.75970 * 15 2 1 18 18 C 1.54327 * 102.94254 * 153.57300 * 17 15 2 19 19 N 1.47022 * 107.27032 * 337.80044 * 18 17 15 20 20 C 1.34777 * 125.64686 * 178.89960 * 19 18 17 21 21 O 1.21281 * 119.99812 * 180.02562 * 20 19 18 22 22 C 1.50703 * 120.00044 * 0.05301 * 20 19 18 23 23 H 1.09001 * 110.50196 * 42.73336 * 22 20 19 24 24 C 1.54087 * 110.56097 * 279.99296 * 22 20 19 25 25 O 1.45703 * 104.00861 * 241.42756 * 24 22 20 26 26 C 1.33770 * 109.47310 * 359.97438 * 25 24 22 27 27 O 1.21510 * 123.06679 * 179.97438 * 26 25 24 28 28 N 1.34005 * 113.85968 * 0.02562 * 26 25 24 29 29 C 1.47424 * 108.70518 * 358.94632 * 19 18 17 30 30 H 1.09004 * 109.47610 * 60.00155 * 1 2 3 31 31 H 1.09008 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47540 * 300.00124 * 1 2 3 33 33 H 1.09001 * 109.46900 * 306.04880 * 3 2 1 34 34 H 1.08993 * 109.47169 * 186.04601 * 3 2 1 35 35 H 0.97005 * 119.99846 * 359.72750 * 6 4 3 36 36 H 0.97000 * 119.99725 * 180.02562 * 10 9 7 37 37 H 1.09004 * 110.71643 * 271.93383 * 17 15 2 38 38 H 1.09000 * 110.72256 * 35.20705 * 17 15 2 39 39 H 1.08998 * 109.87921 * 218.38903 * 18 17 15 40 40 H 1.08998 * 110.01182 * 97.29620 * 18 17 15 41 41 H 1.09001 * 110.52439 * 0.06078 * 24 22 20 42 42 H 1.09003 * 110.51922 * 122.79815 * 24 22 20 43 43 H 0.96995 * 125.55738 * 179.97438 * 28 26 25 44 44 H 1.09005 * 110.36660 * 265.29022 * 29 19 18 45 45 H 1.08994 * 110.46109 * 143.01201 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0471 1.2984 5 8 1.0006 1.4472 2.1389 6 7 2.0187 3.3200 1.5237 7 6 1.6876 3.9365 2.7025 8 1 1.1204 3.4024 3.4506 9 6 2.0818 5.2485 2.9351 10 7 1.7640 5.8397 4.0648 11 14 3.0622 6.1724 1.6409 12 1 2.1308 6.8768 0.7237 13 1 3.9474 7.1632 2.3043 14 1 3.8880 5.2117 0.8661 15 6 1.9954 -0.7659 -1.1376 16 1 1.7760 -0.2631 -2.0795 17 6 3.5186 -1.0169 -0.9818 18 6 3.7400 -2.3123 -1.7909 19 7 2.4441 -3.0016 -1.8744 20 6 2.2120 -4.1625 -2.5186 21 8 1.0979 -4.6417 -2.5222 22 6 3.3370 -4.8653 -3.2339 23 1 4.2430 -4.8502 -2.6282 24 6 3.5935 -4.2166 -4.6079 25 8 3.3327 -5.2893 -5.5587 26 6 2.9807 -6.3967 -4.8960 27 8 2.7072 -7.4426 -5.4508 28 7 2.9561 -6.2470 -3.5646 29 6 1.4404 -2.2122 -1.1377 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.5610 1.9274 -0.8309 34 1 3.0796 1.3445 -0.1082 35 1 2.5278 3.7997 0.8517 36 1 2.0389 6.7557 4.2269 37 1 4.0908 -0.1931 -1.4086 38 1 3.7796 -1.1671 0.0658 39 1 4.4656 -2.9473 -1.2825 40 1 4.0966 -2.0704 -2.7921 41 1 2.9078 -3.3853 -4.7720 42 1 4.6277 -3.8809 -4.6847 43 1 2.7248 -6.9371 -2.9235 44 1 1.3426 -2.5810 -0.1166 45 1 0.4777 -2.2491 -1.6474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189931887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:52 Heat of formation + Delta-G solvation = -104.953137 kcal Electronic energy + Delta-G solvation = -29583.213766 eV Core-core repulsion = 25216.326960 eV Total energy + Delta-G solvation = -4366.886806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34745 -40.45744 -39.03512 -38.01408 -37.56354 -35.79105 -35.20732 -33.97537 -31.76710 -31.68944 -30.48097 -29.29290 -27.75114 -26.01140 -24.97362 -23.67186 -23.01701 -22.90146 -20.60928 -20.14852 -19.42504 -18.72387 -18.36468 -18.34132 -17.58192 -17.02041 -16.67824 -16.10516 -15.87345 -15.30760 -15.08944 -14.97090 -14.79584 -14.73483 -14.38645 -14.18782 -14.11330 -13.86434 -13.48315 -13.29139 -13.14282 -13.06998 -12.75945 -12.54427 -12.31368 -11.99202 -11.68513 -11.46470 -11.37078 -11.28394 -11.19207 -11.15313 -11.02403 -10.83678 -10.66489 -10.04338 -9.84486 -9.61356 -9.21637 -8.71046 -8.26638 -8.12935 -6.37554 -3.89349 1.80907 1.90764 2.19938 2.39097 2.95168 2.95973 3.00238 3.09321 3.38146 3.57459 3.64595 3.69886 3.97631 4.03515 4.15784 4.19864 4.36380 4.54451 4.56754 4.68107 4.72267 4.85147 4.93028 5.04180 5.14358 5.32377 5.39343 5.47253 5.53093 5.57459 5.61594 5.69920 5.75558 5.83019 5.88717 6.20344 6.39351 6.65311 6.84094 6.97063 7.11025 7.44411 7.50908 7.57923 8.07403 8.52685 8.88417 9.35099 9.75215 10.75408 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.001945 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.056371 B =14394.979974 C =14924.426083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.506 5.506 3 C 0.043 3.957 4 C 0.452 3.548 5 O -0.558 6.558 6 N -0.590 5.590 7 C -0.305 4.305 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.880 5.880 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.057 0.943 17 C -0.127 4.127 18 C 0.095 3.905 19 N -0.611 5.611 20 C 0.517 3.483 21 O -0.517 6.517 22 C 0.080 3.920 23 H 0.129 0.871 24 C 0.055 3.945 25 O -0.321 6.321 26 C 0.651 3.349 27 O -0.515 6.515 28 N -0.710 5.710 29 C 0.115 3.885 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.370 0.630 36 H 0.274 0.726 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.442 0.558 44 H 0.087 0.913 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -15.076 -16.769 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.231 5.231 3 C -0.088 4.088 4 C 0.237 3.763 5 O -0.440 6.440 6 N -0.229 5.229 7 C -0.434 4.434 8 H 0.138 0.862 9 C -0.162 4.162 10 N -0.520 5.520 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.042 4.042 16 H 0.075 0.925 17 C -0.165 4.165 18 C -0.028 4.028 19 N -0.347 5.347 20 C 0.302 3.698 21 O -0.392 6.392 22 C -0.030 4.030 23 H 0.146 0.854 24 C -0.020 4.020 25 O -0.231 6.231 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.383 5.383 29 C -0.007 4.007 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.140 0.860 43 H 0.286 0.714 44 H 0.105 0.895 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.266 -16.254 -16.341 24.486 hybrid contribution 0.529 1.309 -1.074 1.774 sum 8.795 -14.945 -17.416 24.577 Atomic orbital electron populations 1.22635 0.86048 1.01950 1.02475 1.61635 1.09075 1.12814 1.39537 1.21913 1.00875 0.88823 0.97198 1.19574 0.85347 0.82460 0.88907 1.90535 1.42488 1.64124 1.46881 1.42207 1.50610 1.11937 1.18158 1.19419 1.33544 0.96233 0.94209 0.86242 1.25049 0.97866 0.96521 0.96730 1.69619 1.45542 1.13524 1.23265 0.86676 0.80493 0.80540 0.81668 1.19667 1.20157 1.19510 1.22793 0.94844 0.93309 0.93261 0.92473 1.22753 0.95674 0.95824 1.02213 1.22238 0.85281 0.94453 1.00850 1.48420 1.11976 1.22052 1.52215 1.20155 0.89715 0.80403 0.79506 1.90806 1.23662 1.64443 1.60258 1.22266 0.98357 0.83951 0.98438 0.85367 1.24249 1.05217 0.89722 0.82859 1.87319 1.81670 1.20872 1.33277 1.18408 0.76362 0.83671 0.81173 1.91108 1.53146 1.24752 1.70877 1.45674 1.73282 1.11942 1.07401 1.22310 0.91641 0.89289 0.97471 0.96357 0.91818 0.88046 0.93189 0.89144 0.79756 0.91564 0.89579 0.88555 0.90470 0.90960 0.87193 0.85980 0.71428 0.89479 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.98 60.06 0.54 0.77 16 2 N -0.51 -6.69 4.40 -233.74 -1.03 -7.72 16 3 C 0.04 0.62 5.36 -4.98 -0.03 0.59 16 4 C 0.45 9.36 7.51 -10.98 -0.08 9.27 16 5 O -0.56 -13.84 13.87 5.55 0.08 -13.77 16 6 N -0.59 -13.07 5.09 -10.96 -0.06 -13.13 16 7 C -0.31 -8.23 10.16 -14.93 -0.15 -8.38 16 8 H 0.12 3.71 7.39 -52.48 -0.39 3.32 16 9 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 10 N -0.88 -24.89 13.96 55.50 0.77 -24.11 16 11 Si 0.88 18.39 27.74 -169.99 -4.71 13.67 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.27 -5.03 6.52 56.52 0.37 -4.66 16 15 C 0.07 0.61 2.71 -65.56 -0.18 0.44 16 16 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 17 C -0.13 -0.81 5.61 -24.89 -0.14 -0.95 16 18 C 0.09 0.37 6.31 -3.06 -0.02 0.36 16 19 N -0.61 -4.31 3.33 -170.51 -0.57 -4.87 16 20 C 0.52 4.23 6.98 -10.98 -0.08 4.15 16 21 O -0.52 -6.65 16.82 5.56 0.09 -6.55 16 22 C 0.08 0.39 3.51 -68.19 -0.24 0.15 16 23 H 0.13 0.17 7.71 -51.93 -0.40 -0.23 16 24 C 0.06 0.22 7.68 37.73 0.29 0.51 16 25 O -0.32 -2.86 11.09 -37.83 -0.42 -3.28 16 26 C 0.65 6.94 9.16 53.71 0.49 7.43 16 27 O -0.52 -7.59 18.04 -19.12 -0.34 -7.93 16 28 N -0.71 -5.24 5.63 -59.36 -0.33 -5.57 16 29 C 0.12 1.07 5.05 -2.52 -0.01 1.05 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.77 6.76 -51.92 -0.35 0.42 16 32 H 0.10 1.79 5.87 -51.93 -0.30 1.49 16 33 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 35 H 0.37 7.12 5.76 -40.82 -0.24 6.88 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 0.43 7.91 -51.93 -0.41 0.02 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.18 8.00 -51.93 -0.42 -0.24 16 40 H 0.07 0.10 7.95 -51.93 -0.41 -0.31 16 41 H 0.11 0.39 7.72 -51.93 -0.40 -0.01 16 42 H 0.12 0.03 8.14 -51.93 -0.42 -0.40 16 43 H 0.44 2.79 8.96 -40.82 -0.37 2.43 16 44 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 45 H 0.08 0.82 7.84 -51.93 -0.41 0.41 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -37.56 371.22 -6.79 -44.34 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.16 Total: 6.95 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 0.30 Total: 16.38 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -1.21 Total: -55.41 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.59 Total: -31.53 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.56 -6.79 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189931887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.611 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds