Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99734 * 2 1 4 4 C 1.50703 * 109.46880 * 66.05151 * 3 2 1 5 5 O 1.21281 * 119.99878 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99861 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00458 * 180.02562 * 6 4 3 8 8 H 1.08007 * 119.99421 * 359.97438 * 7 6 4 9 9 C 1.38942 * 120.00587 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00112 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00145 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47202 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.46726 * 299.99981 * 11 9 7 14 14 H 1.48497 * 109.46873 * 59.99799 * 11 9 7 15 15 C 1.46908 * 110.99595 * 236.05278 * 2 1 3 16 16 H 1.08991 * 110.88855 * 62.73956 * 15 2 1 17 17 C 1.55155 * 111.00189 * 298.80976 * 15 2 1 18 18 C 1.54321 * 102.94232 * 206.42470 * 17 15 2 19 19 N 1.47027 * 107.27159 * 22.19928 * 18 17 15 20 20 C 1.34770 * 125.65050 * 181.09117 * 19 18 17 21 21 O 1.21283 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99824 * 359.95912 * 20 19 18 23 23 H 1.08992 * 110.50736 * 42.73852 * 22 20 19 24 24 C 1.54086 * 110.56386 * 279.99649 * 22 20 19 25 25 O 1.45705 * 104.00889 * 241.42739 * 24 22 20 26 26 C 1.33765 * 109.47876 * 0.02562 * 25 24 22 27 27 O 1.21510 * 123.07304 * 180.02562 * 26 25 24 28 28 N 1.34006 * 113.85443 * 359.97438 * 26 25 24 29 29 C 1.47426 * 108.70018 * 1.05435 * 19 18 17 30 30 H 1.09004 * 109.47386 * 53.94645 * 1 2 3 31 31 H 1.08999 * 109.46878 * 173.94348 * 1 2 3 32 32 H 1.09002 * 109.46831 * 293.94466 * 1 2 3 33 33 H 1.08997 * 109.47439 * 306.04571 * 3 2 1 34 34 H 1.08998 * 109.46746 * 186.04693 * 3 2 1 35 35 H 0.97006 * 120.00114 * 359.97438 * 6 4 3 36 36 H 0.97001 * 119.99964 * 359.97438 * 10 9 7 37 37 H 1.09001 * 110.72440 * 324.79696 * 17 15 2 38 38 H 1.09006 * 110.71682 * 88.06745 * 17 15 2 39 39 H 1.08989 * 109.88852 * 262.77678 * 18 17 15 40 40 H 1.09001 * 110.00806 * 141.68474 * 18 17 15 41 41 H 1.09004 * 110.52651 * 0.05797 * 24 22 20 42 42 H 1.09005 * 110.52406 * 122.65692 * 24 22 20 43 43 H 0.97004 * 125.55825 * 180.02562 * 28 26 25 44 44 H 1.08999 * 110.36807 * 217.03677 * 29 19 18 45 45 H 1.08999 * 110.36645 * 94.71119 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0048 1.4454 2.1408 6 7 2.0189 3.3198 1.5238 7 6 1.6933 3.9343 2.7053 8 1 1.1303 3.3985 3.4554 9 6 2.0874 5.2462 2.9378 10 7 2.7728 5.8979 2.0255 11 14 1.6431 6.0837 4.5474 12 1 2.1757 7.4698 4.5477 13 1 0.1658 6.1215 4.6944 14 1 2.2339 5.3255 5.6794 15 6 1.9954 -0.7659 -1.1378 16 1 1.6992 -0.3109 -2.0828 17 6 1.5430 -2.2483 -1.0672 18 6 2.6574 -2.9869 -1.8379 19 7 3.8489 -2.1258 -1.8142 20 6 5.0314 -2.4049 -2.3975 21 8 5.9498 -1.6172 -2.3135 22 6 5.2126 -3.6958 -3.1536 23 1 4.3375 -3.9038 -3.7691 24 6 5.4790 -4.8603 -2.1804 25 8 6.8032 -5.3380 -2.5561 26 6 7.2701 -4.6048 -3.5728 27 8 8.3572 -4.7931 -4.0819 28 7 6.4288 -3.6442 -3.9794 29 6 3.5355 -0.9062 -1.0476 30 1 -0.3634 0.6048 -0.8308 31 1 -0.3633 -1.0219 -0.1084 32 1 -0.3633 0.4171 0.9393 33 1 1.5611 1.9274 -0.8309 34 1 3.0797 1.3444 -0.1083 35 1 2.5248 3.8008 0.8503 36 1 3.0039 5.4629 1.1898 37 1 1.4983 -2.5891 -0.0328 38 1 0.5799 -2.3815 -1.5601 39 1 2.3447 -3.1589 -2.8677 40 1 2.8780 -3.9384 -1.3539 41 1 5.4792 -4.5048 -1.1500 42 1 4.7353 -5.6463 -2.3122 43 1 6.5947 -3.0172 -4.7007 44 1 4.0222 -0.0404 -1.4966 45 1 3.8459 -1.0207 -0.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189931889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = -110.668134 kcal Electronic energy + Delta-G solvation = -29691.478792 eV Core-core repulsion = 25324.344165 eV Total energy + Delta-G solvation = -4367.134627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30780 -40.42771 -38.97872 -37.97420 -37.52392 -35.80254 -35.17038 -34.22498 -31.70350 -31.15279 -30.44587 -29.02869 -27.96496 -25.68636 -24.76796 -23.74939 -23.13010 -22.87434 -20.58163 -20.21772 -19.54094 -18.68795 -18.37558 -17.94108 -17.40934 -17.10100 -16.72348 -16.30280 -15.58047 -15.55810 -15.06398 -14.94270 -14.76538 -14.61760 -14.33621 -14.16125 -14.07070 -13.79090 -13.67969 -13.39821 -13.24126 -13.08544 -12.69290 -12.39527 -12.03280 -11.62694 -11.48849 -11.40036 -11.28987 -11.23447 -11.15254 -11.07271 -10.89215 -10.79610 -10.23035 -9.89369 -9.80522 -9.55815 -9.17863 -8.65270 -8.13044 -8.03701 -6.78666 -3.92378 1.85244 1.94387 2.23826 2.42738 2.99445 3.28034 3.32647 3.42063 3.52704 3.59040 3.73590 3.79191 3.99281 4.12670 4.22508 4.27203 4.41361 4.53540 4.61245 4.76042 4.80973 4.87975 4.95230 5.03439 5.19673 5.34406 5.42317 5.49594 5.54425 5.61348 5.64431 5.68196 5.80031 5.84332 5.96289 6.23536 6.37484 6.69154 6.87745 6.98615 7.13309 7.48844 7.61703 7.76220 8.04189 8.55765 8.75756 9.43251 9.83013 10.64565 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.002110 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.947010 B =13266.357976 C =14246.947098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.506 5.506 3 C 0.042 3.958 4 C 0.446 3.554 5 O -0.572 6.572 6 N -0.575 5.575 7 C -0.382 4.382 8 H 0.099 0.901 9 C -0.009 4.009 10 N -0.900 5.900 11 Si 1.091 2.909 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.068 3.932 16 H 0.056 0.944 17 C -0.123 4.123 18 C 0.095 3.905 19 N -0.611 5.611 20 C 0.516 3.484 21 O -0.514 6.514 22 C 0.081 3.919 23 H 0.128 0.872 24 C 0.055 3.945 25 O -0.321 6.321 26 C 0.652 3.348 27 O -0.515 6.515 28 N -0.711 5.711 29 C 0.112 3.888 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.375 0.625 36 H 0.261 0.739 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.441 0.559 44 H 0.080 0.920 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -20.516 -13.520 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.230 5.230 3 C -0.089 4.089 4 C 0.232 3.768 5 O -0.455 6.455 6 N -0.213 5.213 7 C -0.511 4.511 8 H 0.117 0.883 9 C -0.212 4.212 10 N -0.539 5.539 11 Si 0.917 3.083 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.042 4.042 16 H 0.074 0.926 17 C -0.161 4.161 18 C -0.028 4.028 19 N -0.347 5.347 20 C 0.301 3.699 21 O -0.389 6.389 22 C -0.029 4.029 23 H 0.145 0.855 24 C -0.021 4.021 25 O -0.231 6.231 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.383 5.383 29 C -0.011 4.011 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.208 0.792 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.285 0.715 44 H 0.099 0.901 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.745 -19.723 -11.645 22.971 hybrid contribution -0.320 -0.275 -2.423 2.460 sum -2.066 -19.998 -14.068 24.538 Atomic orbital electron populations 1.22568 0.85942 1.00941 1.03056 1.61640 1.09058 1.12838 1.39486 1.21953 1.00755 0.88869 0.97365 1.19556 0.85686 0.82685 0.88901 1.90481 1.43658 1.64341 1.47044 1.41942 1.49927 1.11435 1.17961 1.20515 1.36665 0.98678 0.95271 0.88276 1.26518 0.95507 0.93636 1.05524 1.70904 1.36430 1.39095 1.07442 0.83135 0.76374 0.76033 0.72766 1.20406 1.21019 1.20954 1.22786 0.93685 0.94434 0.93287 0.92587 1.22711 0.97302 0.93795 1.02268 1.22224 0.85137 0.94361 1.01067 1.48410 1.11421 1.21768 1.53096 1.20169 0.81703 0.88108 0.79941 1.90822 1.39521 1.49031 1.59481 1.22254 0.91891 0.94648 0.94153 0.85486 1.24249 0.83043 0.95004 0.99792 1.87317 1.32961 1.54421 1.48381 1.18407 0.83997 0.78425 0.78763 1.91108 1.18998 1.71907 1.57849 1.45678 1.17571 1.37037 1.38056 1.22354 0.94734 0.86816 0.97150 0.96428 0.91924 0.88248 0.93331 0.89394 0.79187 0.92743 0.88674 0.89692 0.90868 0.90646 0.87074 0.85997 0.71466 0.90121 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.08 60.07 0.55 0.85 16 2 N -0.51 -7.07 4.40 -233.74 -1.03 -8.10 16 3 C 0.04 0.68 5.33 -4.97 -0.03 0.65 16 4 C 0.45 9.99 7.54 -10.99 -0.08 9.90 16 5 O -0.57 -14.64 13.88 5.56 0.08 -14.57 16 6 N -0.57 -14.04 5.28 -10.97 -0.06 -14.10 16 7 C -0.38 -10.50 9.68 -14.94 -0.14 -10.64 16 8 H 0.10 2.87 7.16 -52.48 -0.38 2.50 16 9 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 10 N -0.90 -24.97 13.68 55.50 0.76 -24.21 16 11 Si 1.09 23.93 29.92 -169.99 -5.09 18.84 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.07 0.66 2.71 -65.56 -0.18 0.49 16 16 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 17 C -0.12 -0.78 5.30 -24.90 -0.13 -0.91 16 18 C 0.10 0.40 6.34 -3.06 -0.02 0.38 16 19 N -0.61 -4.76 3.33 -170.52 -0.57 -5.33 16 20 C 0.52 4.64 6.98 -10.99 -0.08 4.56 16 21 O -0.51 -7.18 16.81 5.56 0.09 -7.09 16 22 C 0.08 0.43 3.52 -68.19 -0.24 0.19 16 23 H 0.13 0.20 7.65 -51.93 -0.40 -0.20 16 24 C 0.05 0.25 7.78 37.72 0.29 0.55 16 25 O -0.32 -3.07 11.09 -37.81 -0.42 -3.48 16 26 C 0.65 7.35 9.16 53.71 0.49 7.84 16 27 O -0.51 -7.90 18.04 -19.12 -0.34 -8.24 16 28 N -0.71 -5.63 5.63 -59.36 -0.33 -5.97 16 29 C 0.11 1.17 5.38 -2.53 -0.01 1.16 16 30 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 31 H 0.06 0.66 6.72 -51.93 -0.35 0.31 16 32 H 0.10 1.75 6.01 -51.93 -0.31 1.43 16 33 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.09 1.32 6.72 -51.93 -0.35 0.97 16 35 H 0.38 8.52 6.73 -40.82 -0.27 8.24 16 36 H 0.26 6.96 6.78 -40.82 -0.28 6.69 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 39 H 0.07 0.14 7.92 -51.94 -0.41 -0.27 16 40 H 0.08 0.15 8.06 -51.93 -0.42 -0.27 16 41 H 0.11 0.50 7.72 -51.93 -0.40 0.10 16 42 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.44 3.01 8.96 -40.82 -0.37 2.64 16 44 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -38.29 372.35 -7.04 -45.32 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.06 Total: 6.64 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 0.32 Total: 14.67 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -1.23 Total: -57.70 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.59 Total: -33.38 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.09 Total: 18.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.29 -7.04 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189931889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.346 kcal (2) G-P(sol) polarization free energy of solvation -38.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds