Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99734 * 2 1 4 4 C 1.50703 * 109.46880 * 66.05151 * 3 2 1 5 5 O 1.21281 * 119.99878 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99861 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00458 * 180.02562 * 6 4 3 8 8 H 1.08007 * 119.99421 * 359.97438 * 7 6 4 9 9 C 1.38942 * 120.00587 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00112 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00145 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47202 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.46726 * 299.99981 * 11 9 7 14 14 H 1.48497 * 109.46873 * 59.99799 * 11 9 7 15 15 C 1.46908 * 110.99595 * 236.05278 * 2 1 3 16 16 H 1.08991 * 110.88855 * 62.73956 * 15 2 1 17 17 C 1.55155 * 111.00189 * 298.80976 * 15 2 1 18 18 C 1.54321 * 102.94232 * 206.42470 * 17 15 2 19 19 N 1.47027 * 107.27159 * 22.19928 * 18 17 15 20 20 C 1.34770 * 125.65050 * 181.09117 * 19 18 17 21 21 O 1.21283 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99824 * 359.95912 * 20 19 18 23 23 H 1.08992 * 110.50736 * 42.73852 * 22 20 19 24 24 C 1.54086 * 110.56386 * 279.99649 * 22 20 19 25 25 O 1.45705 * 104.00889 * 241.42739 * 24 22 20 26 26 C 1.33765 * 109.47876 * 0.02562 * 25 24 22 27 27 O 1.21510 * 123.07304 * 180.02562 * 26 25 24 28 28 N 1.34006 * 113.85443 * 359.97438 * 26 25 24 29 29 C 1.47426 * 108.70018 * 1.05435 * 19 18 17 30 30 H 1.09004 * 109.47386 * 53.94645 * 1 2 3 31 31 H 1.08999 * 109.46878 * 173.94348 * 1 2 3 32 32 H 1.09002 * 109.46831 * 293.94466 * 1 2 3 33 33 H 1.08997 * 109.47439 * 306.04571 * 3 2 1 34 34 H 1.08998 * 109.46746 * 186.04693 * 3 2 1 35 35 H 0.97006 * 120.00114 * 359.97438 * 6 4 3 36 36 H 0.97001 * 119.99964 * 359.97438 * 10 9 7 37 37 H 1.09001 * 110.72440 * 324.79696 * 17 15 2 38 38 H 1.09006 * 110.71682 * 88.06745 * 17 15 2 39 39 H 1.08989 * 109.88852 * 262.77678 * 18 17 15 40 40 H 1.09001 * 110.00806 * 141.68474 * 18 17 15 41 41 H 1.09004 * 110.52651 * 0.05797 * 24 22 20 42 42 H 1.09005 * 110.52406 * 122.65692 * 24 22 20 43 43 H 0.97004 * 125.55825 * 180.02562 * 28 26 25 44 44 H 1.08999 * 110.36807 * 217.03677 * 29 19 18 45 45 H 1.08999 * 110.36645 * 94.71119 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0048 1.4454 2.1408 6 7 2.0189 3.3198 1.5238 7 6 1.6933 3.9343 2.7053 8 1 1.1303 3.3985 3.4554 9 6 2.0874 5.2462 2.9378 10 7 2.7728 5.8979 2.0255 11 14 1.6431 6.0837 4.5474 12 1 2.1757 7.4698 4.5477 13 1 0.1658 6.1215 4.6944 14 1 2.2339 5.3255 5.6794 15 6 1.9954 -0.7659 -1.1378 16 1 1.6992 -0.3109 -2.0828 17 6 1.5430 -2.2483 -1.0672 18 6 2.6574 -2.9869 -1.8379 19 7 3.8489 -2.1258 -1.8142 20 6 5.0314 -2.4049 -2.3975 21 8 5.9498 -1.6172 -2.3135 22 6 5.2126 -3.6958 -3.1536 23 1 4.3375 -3.9038 -3.7691 24 6 5.4790 -4.8603 -2.1804 25 8 6.8032 -5.3380 -2.5561 26 6 7.2701 -4.6048 -3.5728 27 8 8.3572 -4.7931 -4.0819 28 7 6.4288 -3.6442 -3.9794 29 6 3.5355 -0.9062 -1.0476 30 1 -0.3634 0.6048 -0.8308 31 1 -0.3633 -1.0219 -0.1084 32 1 -0.3633 0.4171 0.9393 33 1 1.5611 1.9274 -0.8309 34 1 3.0797 1.3444 -0.1083 35 1 2.5248 3.8008 0.8503 36 1 3.0039 5.4629 1.1898 37 1 1.4983 -2.5891 -0.0328 38 1 0.5799 -2.3815 -1.5601 39 1 2.3447 -3.1589 -2.8677 40 1 2.8780 -3.9384 -1.3539 41 1 5.4792 -4.5048 -1.1500 42 1 4.7353 -5.6463 -2.3122 43 1 6.5947 -3.0172 -4.7007 44 1 4.0222 -0.0404 -1.4966 45 1 3.8459 -1.0207 -0.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189931889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -144.954034 kcal Electronic energy + Delta-G solvation = -29692.965541 eV Core-core repulsion = 25324.344165 eV Total energy + Delta-G solvation = -4368.621375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95297 -41.20149 -40.42350 -39.11133 -38.38286 -36.95660 -36.09185 -35.81752 -33.18067 -32.40662 -31.05369 -29.72138 -29.27566 -26.61404 -26.21211 -24.79865 -23.87072 -23.58859 -21.68288 -21.13807 -20.73007 -19.94779 -19.29623 -19.01029 -18.22310 -17.98855 -17.75102 -17.42702 -16.84086 -16.47675 -16.27410 -15.78368 -15.71632 -15.64122 -15.42724 -15.32044 -15.28990 -14.71344 -14.65589 -14.34757 -14.04271 -13.88133 -13.66047 -13.35424 -13.31793 -13.07716 -12.75089 -12.60797 -12.40304 -12.09528 -12.00857 -11.93289 -11.92135 -11.87974 -11.80929 -11.57155 -11.47705 -10.45421 -10.36280 -10.10739 -9.81286 -9.30989 -8.92834 -6.06849 1.19894 1.27591 1.51972 1.53786 1.57911 1.74114 1.81703 2.00221 2.37673 2.48995 2.68371 3.00450 3.11581 3.16111 3.22684 3.50643 3.63848 3.71973 3.96452 4.00665 4.07382 4.20645 4.29119 4.30911 4.35210 4.40028 4.42139 4.54482 4.59972 4.67552 4.80269 4.87150 4.98247 5.10389 5.18812 5.29126 5.58525 5.59923 5.85039 5.95861 6.02697 6.14338 6.31805 6.57119 6.75052 6.80544 6.90598 7.44305 7.92793 8.54695 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.002110 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.947010 B =13266.357976 C =14246.947098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.447 3.553 5 O -0.605 6.605 6 N -0.591 5.591 7 C -0.406 4.406 8 H 0.075 0.925 9 C -0.045 4.045 10 N -0.919 5.919 11 Si 1.133 2.867 12 H -0.275 1.275 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.070 3.930 16 H 0.070 0.930 17 C -0.118 4.118 18 C 0.091 3.909 19 N -0.604 5.604 20 C 0.512 3.488 21 O -0.577 6.577 22 C 0.091 3.909 23 H 0.184 0.816 24 C 0.049 3.951 25 O -0.338 6.338 26 C 0.648 3.352 27 O -0.570 6.570 28 N -0.703 5.703 29 C 0.111 3.889 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.382 0.618 36 H 0.258 0.742 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.177 0.823 43 H 0.444 0.556 44 H 0.060 0.940 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -22.913 -14.985 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.076 4.076 4 C 0.234 3.766 5 O -0.490 6.490 6 N -0.230 5.230 7 C -0.535 4.535 8 H 0.093 0.907 9 C -0.243 4.243 10 N -0.559 5.559 11 Si 0.953 3.047 12 H -0.200 1.200 13 H -0.196 1.196 14 H -0.199 1.199 15 C -0.039 4.039 16 H 0.088 0.912 17 C -0.155 4.155 18 C -0.030 4.030 19 N -0.338 5.338 20 C 0.299 3.701 21 O -0.456 6.456 22 C -0.018 4.018 23 H 0.201 0.799 24 C -0.025 4.025 25 O -0.248 6.248 26 C 0.401 3.599 27 O -0.458 6.458 28 N -0.375 5.375 29 C -0.013 4.013 30 H 0.046 0.954 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.216 0.784 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.195 0.805 43 H 0.289 0.711 44 H 0.078 0.922 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.916 -22.160 -13.126 26.052 hybrid contribution 0.235 0.391 -1.931 1.985 sum -3.681 -21.769 -15.058 26.724 Atomic orbital electron populations 1.22449 0.85660 1.02954 1.00881 1.61553 1.09448 1.11405 1.42463 1.21773 1.01618 0.90312 0.93902 1.20708 0.83546 0.81844 0.90475 1.90463 1.44588 1.64987 1.48918 1.42037 1.50923 1.12449 1.17601 1.20501 1.37462 0.99317 0.96255 0.90655 1.27826 0.94695 0.93981 1.07785 1.70975 1.37588 1.39439 1.07893 0.82638 0.77014 0.75323 0.69741 1.19958 1.19559 1.19876 1.22853 0.92808 0.96259 0.91993 0.91227 1.22759 0.99480 0.90796 1.02513 1.22612 0.82516 0.94319 1.03589 1.48437 1.12344 1.21218 1.51783 1.20876 0.80995 0.88749 0.79464 1.90806 1.41631 1.51354 1.61832 1.22599 0.92519 0.92490 0.94232 0.79894 1.24792 0.81960 0.96232 0.99475 1.87280 1.35461 1.54395 1.47616 1.18568 0.83658 0.78854 0.78786 1.91052 1.21406 1.73588 1.59790 1.45703 1.18028 1.35927 1.37811 1.22135 0.95382 0.87732 0.96021 0.95449 0.88415 0.92874 0.91389 0.88325 0.78406 0.93095 0.89883 0.87024 0.86833 0.87350 0.87167 0.80539 0.71097 0.92167 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.08 127.69 1.16 1.88 16 2 N -0.52 -13.99 4.40 -893.41 -3.93 -17.92 16 3 C 0.06 1.78 5.33 85.56 0.46 2.23 16 4 C 0.45 20.51 7.54 87.66 0.66 21.17 16 5 O -0.60 -32.01 13.88 -3.03 -0.04 -32.05 16 6 N -0.59 -29.77 5.28 -307.00 -1.62 -31.39 16 7 C -0.41 -23.02 9.68 84.04 0.81 -22.21 16 8 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 9 C -0.04 -2.45 5.50 84.92 0.47 -1.98 16 10 N -0.92 -51.73 13.68 21.66 0.30 -51.43 16 11 Si 1.13 48.46 29.92 68.60 2.05 50.51 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 C 0.07 1.17 2.71 46.31 0.13 1.30 16 16 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 17 C -0.12 -0.94 5.30 31.78 0.17 -0.77 16 18 C 0.09 0.22 6.34 86.73 0.55 0.77 16 19 N -0.60 -7.48 3.33 -811.80 -2.70 -10.18 16 20 C 0.51 8.02 6.98 87.66 0.61 8.63 16 21 O -0.58 -16.19 16.81 -3.04 -0.05 -16.24 16 22 C 0.09 0.60 3.52 44.50 0.16 0.76 16 23 H 0.18 -0.74 7.65 -2.39 -0.02 -0.76 16 24 C 0.05 0.25 7.78 72.35 0.56 0.81 16 25 O -0.34 -5.85 11.09 -47.25 -0.52 -6.37 16 26 C 0.65 14.23 9.16 129.91 1.19 15.42 16 27 O -0.57 -18.06 18.04 19.65 0.35 -17.71 16 28 N -0.70 -9.92 5.63 -573.44 -3.23 -13.15 16 29 C 0.11 2.20 5.38 86.86 0.47 2.67 16 30 H 0.03 0.63 8.06 -2.39 -0.02 0.61 16 31 H 0.10 1.75 6.72 -2.39 -0.02 1.73 16 32 H 0.05 1.88 6.01 -2.39 -0.01 1.86 16 33 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.10 2.97 6.72 -2.39 -0.02 2.96 16 35 H 0.38 17.91 6.73 -92.70 -0.62 17.29 16 36 H 0.26 14.08 6.78 -92.71 -0.63 13.45 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.37 7.88 -2.38 -0.02 0.35 16 39 H 0.11 -0.49 7.92 -2.39 -0.02 -0.51 16 40 H 0.11 -0.33 8.06 -2.39 -0.02 -0.35 16 41 H 0.11 0.61 7.72 -2.39 -0.02 0.60 16 42 H 0.18 -0.99 8.14 -2.38 -0.02 -1.01 16 43 H 0.44 5.60 8.96 -92.71 -0.83 4.77 16 44 H 0.06 1.42 7.68 -2.39 -0.02 1.40 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -92.08 372.35 -2.26 -94.34 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.26 Total: 20.91 kcal Atomic # 6 Polarization: 23.28 SS G_CDS: 7.39 Total: 30.67 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -11.18 Total: -124.07 kcal Atomic # 8 Polarization: -72.11 SS G_CDS: -0.26 Total: -72.37 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Total: -92.08 -2.26 -94.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189931889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.611 kcal (2) G-P(sol) polarization free energy of solvation -92.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds