Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47375 * 120.00211 * 11 9 7 14 14 H 1.48496 * 109.47606 * 240.00311 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09004 * 111.00278 * 81.10732 * 16 15 6 18 18 N 1.46505 * 111.00202 * 204.91694 * 16 15 6 19 19 C 1.34778 * 120.00074 * 273.54598 * 18 16 15 20 20 O 1.21279 * 119.99855 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99695 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.46879 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47385 * 180.02562 * 22 21 19 24 24 H 1.09002 * 110.52965 * 304.30411 * 23 22 21 25 25 N 1.47313 * 110.59568 * 67.12615 * 23 22 21 26 26 C 1.34528 * 106.61639 * 118.53107 * 25 23 22 27 27 O 1.21544 * 123.77180 * 179.97438 * 26 25 23 28 28 N 1.33786 * 112.45951 * 359.97438 * 26 25 23 29 29 C 1.35119 * 111.68776 * 0.09067 * 28 26 25 30 30 O 1.21228 * 127.34286 * 179.97438 * 29 28 26 31 31 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 33 33 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 34 34 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 35 35 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 36 36 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 38 38 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 39 39 H 0.96998 * 119.99743 * 93.55096 * 18 16 15 40 40 H 1.08994 * 109.47684 * 300.00048 * 21 19 18 41 41 H 1.09002 * 109.47129 * 60.00651 * 21 19 18 42 42 H 1.09001 * 109.47265 * 300.00367 * 22 21 19 43 43 H 1.09003 * 109.47344 * 60.00146 * 22 21 19 44 44 H 0.97000 * 126.69701 * 298.56037 * 25 23 22 45 45 H 0.97000 * 124.18387 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6424 4.3654 -4.8803 13 1 4.6000 2.7002 -6.3017 14 1 3.4614 4.7932 -5.8509 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9539 0.3506 0.3515 18 7 3.3921 1.4559 2.0649 19 6 4.4451 1.0916 2.8232 20 8 5.4311 0.6146 2.3026 21 6 4.3976 1.2781 4.3179 22 6 5.7093 0.7886 4.9348 23 6 5.6609 0.9773 6.4524 24 1 5.4476 2.0168 6.7017 25 7 4.6564 0.0834 7.0540 26 6 5.3202 -0.7312 7.8940 27 8 4.7858 -1.5972 8.5586 28 7 6.6344 -0.4815 7.9162 29 6 6.9640 0.5325 7.0862 30 8 8.0687 0.9906 6.8875 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.4718 2.4692 -1.7521 35 1 2.3063 0.9351 -2.1187 36 1 1.9407 2.3300 -4.7744 37 1 5.1841 2.3745 -0.1004 38 1 3.8300 3.4150 0.4369 39 1 2.6036 1.8377 2.4812 40 1 4.2603 2.3346 4.5481 41 1 3.5662 0.7056 4.7292 42 1 5.8471 -0.2679 4.7047 43 1 6.5404 1.3614 4.5234 44 1 3.7024 0.0820 6.8784 45 1 7.2723 -0.9672 8.4621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213829650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -96.892897 kcal Electronic energy + Delta-G solvation = -29513.779506 eV Core-core repulsion = 25147.242219 eV Total energy + Delta-G solvation = -4366.537288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.76163 -39.87721 -39.04357 -38.26867 -36.85284 -35.96670 -34.97527 -34.12047 -32.64671 -31.74893 -29.07815 -28.30118 -26.96831 -26.18900 -24.55924 -23.70458 -23.02597 -21.80424 -20.73737 -20.54369 -19.91557 -18.81695 -17.55660 -17.44447 -17.08316 -16.80960 -16.48777 -16.17122 -16.03039 -15.68373 -15.51872 -14.94970 -14.64867 -14.56462 -14.46534 -14.27955 -13.87886 -13.44356 -13.32891 -13.09129 -12.67405 -12.39241 -12.27894 -11.95222 -11.64013 -11.51546 -11.40604 -11.27919 -11.05125 -10.84904 -10.82914 -10.79655 -10.71061 -10.15851 -10.03541 -10.00671 -9.86272 -9.81007 -9.15114 -8.84489 -8.64019 -6.92913 -5.77039 -3.12130 1.12798 1.95649 2.55551 2.63150 2.68565 3.14923 3.38074 3.44051 3.46353 3.49923 4.06811 4.14088 4.30503 4.48111 4.51016 4.75696 4.88498 4.89109 5.05973 5.16967 5.34029 5.44749 5.48686 5.52322 5.57575 5.60293 5.66408 5.73269 5.80863 5.89043 5.99317 6.10258 6.25526 6.43420 6.45883 6.58719 6.78795 6.91115 7.19843 7.43461 7.58104 7.67286 7.67623 7.81171 8.16260 8.30006 9.13948 9.74051 10.36609 11.34485 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.002225 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.564655 B =12581.163743 C =13901.751127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.163 3.837 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.082 0.918 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.132 3.868 16 C 0.134 3.866 17 H 0.103 0.897 18 N -0.716 5.716 19 C 0.511 3.489 20 O -0.535 6.535 21 C -0.139 4.139 22 C -0.105 4.105 23 C 0.092 3.908 24 H 0.134 0.866 25 N -0.721 5.721 26 C 0.705 3.295 27 O -0.546 6.546 28 N -0.682 5.682 29 C 0.530 3.470 30 O -0.459 6.459 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.396 0.604 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.442 0.558 45 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -1.827 23.175 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.037 3.963 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.029 3.971 17 H 0.121 0.879 18 N -0.366 5.366 19 C 0.297 3.703 20 O -0.411 6.411 21 C -0.179 4.179 22 C -0.144 4.144 23 C -0.017 4.017 24 H 0.151 0.849 25 N -0.387 5.387 26 C 0.404 3.596 27 O -0.419 6.419 28 N -0.353 5.353 29 C 0.315 3.685 30 O -0.327 6.327 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.230 0.770 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.287 0.713 45 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.017 -2.474 22.743 22.877 hybrid contribution -0.529 0.599 -0.489 0.937 sum -0.512 -1.874 22.254 22.339 Atomic orbital electron populations 1.22703 0.81621 1.02070 0.99856 1.87902 1.19193 1.27520 1.95083 1.23857 0.92551 0.84095 0.99829 0.91959 1.21587 0.88610 0.96995 0.89082 1.44267 1.20045 1.65802 1.02711 1.19125 1.02422 1.28762 0.85261 0.90062 1.24826 0.97181 1.00710 0.97680 1.69945 1.16266 1.47607 1.23212 0.86000 0.78394 0.78354 0.82747 1.20398 1.21657 1.21740 1.21820 0.97529 0.93525 0.86721 1.22416 0.96119 1.01068 0.77510 0.87873 1.45957 1.18482 1.64321 1.07858 1.20406 0.83107 0.77985 0.88832 1.90757 1.31919 1.43806 1.74611 1.21624 0.99204 1.03954 0.93132 1.21568 0.99071 1.04816 0.88957 1.22218 0.85966 0.97464 0.96074 0.84910 1.45600 1.10760 1.36840 1.45484 1.15841 0.81224 0.81812 0.80688 1.91077 1.70074 1.34181 1.46576 1.44411 1.10399 1.36262 1.44272 1.20833 0.90510 0.78844 0.78266 1.90883 1.24126 1.56972 1.60680 0.90236 0.94837 0.93503 0.93388 0.91970 0.93694 0.93067 0.95980 0.77011 0.88142 0.88915 0.89589 0.87946 0.71347 0.72494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.88 101.05 1.10 1.56 16 2 O -0.38 -6.61 10.44 -35.23 -0.37 -6.98 16 3 C 0.06 0.99 3.04 -24.76 -0.08 0.92 16 4 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 5 C 0.16 3.84 5.14 -3.07 -0.02 3.82 16 6 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16 11 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.13 2.70 6.93 -2.53 -0.02 2.68 16 16 C 0.13 2.36 3.05 -65.64 -0.20 2.16 16 17 H 0.10 2.12 7.73 -51.93 -0.40 1.71 16 18 N -0.72 -8.91 5.23 -51.59 -0.27 -9.18 16 19 C 0.51 6.23 7.83 -10.99 -0.09 6.14 16 20 O -0.53 -9.10 15.73 5.56 0.09 -9.01 16 21 C -0.14 -0.85 5.61 -27.88 -0.16 -1.01 16 22 C -0.11 -0.72 4.26 -26.73 -0.11 -0.83 16 23 C 0.09 0.43 3.67 -68.20 -0.25 0.18 16 24 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 25 N -0.72 -3.40 5.98 -59.19 -0.35 -3.75 16 26 C 0.71 5.43 9.00 -88.02 -0.79 4.64 16 27 O -0.55 -6.32 18.04 5.33 0.10 -6.22 16 28 N -0.68 -4.30 5.72 -15.71 -0.09 -4.39 16 29 C 0.53 3.79 8.17 -10.40 -0.08 3.70 16 30 O -0.46 -4.78 18.02 5.60 0.10 -4.68 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 35 H 0.06 1.69 7.29 -51.93 -0.38 1.31 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 3.57 8.52 -40.82 -0.35 3.23 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.35 7.47 -51.93 -0.39 -0.04 16 42 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 44 H 0.44 1.23 8.45 -40.82 -0.34 0.89 16 45 H 0.43 2.05 8.96 -40.82 -0.37 1.68 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -37.43 380.05 -7.40 -44.83 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.36 Total: 1.30 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: -0.94 Total: 17.20 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.72 Total: -59.10 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.08 Total: -26.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.43 -7.40 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213829650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.059 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds