Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47375 * 120.00211 * 11 9 7 14 14 H 1.48496 * 109.47606 * 240.00311 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09004 * 111.00278 * 81.10732 * 16 15 6 18 18 N 1.46505 * 111.00202 * 204.91694 * 16 15 6 19 19 C 1.34778 * 120.00074 * 273.54598 * 18 16 15 20 20 O 1.21279 * 119.99855 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99695 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.46879 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47385 * 180.02562 * 22 21 19 24 24 H 1.09002 * 110.52965 * 304.30411 * 23 22 21 25 25 N 1.47313 * 110.59568 * 67.12615 * 23 22 21 26 26 C 1.34528 * 106.61639 * 118.53107 * 25 23 22 27 27 O 1.21544 * 123.77180 * 179.97438 * 26 25 23 28 28 N 1.33786 * 112.45951 * 359.97438 * 26 25 23 29 29 C 1.35119 * 111.68776 * 0.09067 * 28 26 25 30 30 O 1.21228 * 127.34286 * 179.97438 * 29 28 26 31 31 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 33 33 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 34 34 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 35 35 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 36 36 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 38 38 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 39 39 H 0.96998 * 119.99743 * 93.55096 * 18 16 15 40 40 H 1.08994 * 109.47684 * 300.00048 * 21 19 18 41 41 H 1.09002 * 109.47129 * 60.00651 * 21 19 18 42 42 H 1.09001 * 109.47265 * 300.00367 * 22 21 19 43 43 H 1.09003 * 109.47344 * 60.00146 * 22 21 19 44 44 H 0.97000 * 126.69701 * 298.56037 * 25 23 22 45 45 H 0.97000 * 124.18387 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6424 4.3654 -4.8803 13 1 4.6000 2.7002 -6.3017 14 1 3.4614 4.7932 -5.8509 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9539 0.3506 0.3515 18 7 3.3921 1.4559 2.0649 19 6 4.4451 1.0916 2.8232 20 8 5.4311 0.6146 2.3026 21 6 4.3976 1.2781 4.3179 22 6 5.7093 0.7886 4.9348 23 6 5.6609 0.9773 6.4524 24 1 5.4476 2.0168 6.7017 25 7 4.6564 0.0834 7.0540 26 6 5.3202 -0.7312 7.8940 27 8 4.7858 -1.5972 8.5586 28 7 6.6344 -0.4815 7.9162 29 6 6.9640 0.5325 7.0862 30 8 8.0687 0.9906 6.8875 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.4718 2.4692 -1.7521 35 1 2.3063 0.9351 -2.1187 36 1 1.9407 2.3300 -4.7744 37 1 5.1841 2.3745 -0.1004 38 1 3.8300 3.4150 0.4369 39 1 2.6036 1.8377 2.4812 40 1 4.2603 2.3346 4.5481 41 1 3.5662 0.7056 4.7292 42 1 5.8471 -0.2679 4.7047 43 1 6.5404 1.3614 4.5234 44 1 3.7024 0.0820 6.8784 45 1 7.2723 -0.9672 8.4621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213829650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -130.878347 kcal Electronic energy + Delta-G solvation = -29515.253226 eV Core-core repulsion = 25147.242219 eV Total energy + Delta-G solvation = -4368.011008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.31591 -41.03400 -39.73068 -39.61145 -37.57036 -37.43045 -35.66538 -35.48007 -33.73114 -33.08308 -30.62926 -29.35673 -28.29000 -27.52353 -26.09777 -24.58656 -23.64825 -22.45781 -22.21253 -21.91851 -21.14672 -19.38382 -19.13856 -18.22466 -17.99529 -17.74169 -17.53863 -17.19728 -16.80910 -16.72559 -16.46511 -16.29258 -15.82296 -15.75311 -15.45978 -15.25632 -15.10347 -14.89379 -14.64658 -14.08622 -13.85318 -13.67224 -13.55616 -13.13024 -12.97174 -12.95746 -12.79114 -12.56728 -12.28513 -12.16950 -12.03809 -11.97317 -11.87189 -11.59266 -11.47191 -11.35851 -10.93496 -10.78343 -10.52800 -10.47389 -10.06004 -8.96540 -7.88345 -5.26057 0.54588 1.45144 1.46141 1.46857 1.57031 1.73793 1.97397 2.09728 2.23593 2.46468 2.78470 2.97108 3.31246 3.51413 3.54261 3.84478 3.90313 3.90817 3.96144 4.11126 4.29762 4.35148 4.40295 4.45392 4.49379 4.62074 4.67398 4.72139 4.85742 4.90531 4.98860 5.05443 5.08937 5.19881 5.34690 5.39105 5.52484 5.66360 5.85125 5.90493 6.13836 6.33061 6.40280 6.64834 7.04751 7.15539 7.37599 7.70136 8.31984 9.21239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.002225 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.564655 B =12581.163743 C =13901.751127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.077 3.923 4 H 0.101 0.899 5 C 0.171 3.829 6 N -0.623 5.623 7 C -0.244 4.244 8 H 0.083 0.917 9 C -0.064 4.064 10 N -0.950 5.950 11 Si 0.980 3.020 12 H -0.266 1.266 13 H -0.294 1.294 14 H -0.287 1.287 15 C 0.132 3.868 16 C 0.152 3.848 17 H 0.067 0.933 18 N -0.702 5.702 19 C 0.505 3.495 20 O -0.590 6.590 21 C -0.124 4.124 22 C -0.102 4.102 23 C 0.108 3.892 24 H 0.176 0.824 25 N -0.701 5.701 26 C 0.704 3.296 27 O -0.586 6.586 28 N -0.677 5.677 29 C 0.530 3.470 30 O -0.495 6.495 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.021 0.979 35 H 0.014 0.986 36 H 0.248 0.752 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.419 0.581 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.454 0.546 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -0.466 25.627 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C 0.018 3.982 4 H 0.118 0.882 5 C 0.045 3.955 6 N -0.351 5.351 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.257 4.257 10 N -0.598 5.598 11 Si 0.808 3.192 12 H -0.191 1.191 13 H -0.221 1.221 14 H -0.214 1.214 15 C 0.005 3.995 16 C 0.045 3.955 17 H 0.086 0.914 18 N -0.354 5.354 19 C 0.294 3.706 20 O -0.470 6.470 21 C -0.164 4.164 22 C -0.142 4.142 23 C -0.001 4.001 24 H 0.193 0.807 25 N -0.367 5.367 26 C 0.404 3.596 27 O -0.463 6.463 28 N -0.348 5.348 29 C 0.317 3.683 30 O -0.366 6.366 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.257 0.743 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.302 0.698 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.337 -1.089 25.248 25.307 hybrid contribution -0.095 0.127 -1.247 1.257 sum -1.432 -0.962 24.001 24.063 Atomic orbital electron populations 1.22973 0.79313 1.03814 1.00815 1.87888 1.21755 1.27045 1.94952 1.23515 0.93434 0.85166 0.96066 0.88166 1.21332 0.87355 0.94462 0.92309 1.44549 1.20877 1.65659 1.04025 1.19477 1.02617 1.28612 0.86540 0.89966 1.25669 0.97945 1.01644 1.00428 1.70166 1.17494 1.48812 1.23352 0.84989 0.77928 0.77289 0.78986 1.19067 1.22098 1.21392 1.21944 0.96592 0.95782 0.85162 1.21762 0.95045 0.97949 0.80724 0.91446 1.45716 1.19876 1.64505 1.05310 1.21550 0.81680 0.76151 0.91238 1.90752 1.34038 1.46066 1.76129 1.21686 0.99720 1.07219 0.87735 1.21459 0.99231 1.03230 0.90243 1.22211 0.84404 0.99282 0.94155 0.80680 1.45522 1.11295 1.35749 1.44110 1.15947 0.81384 0.81597 0.80714 1.91057 1.70798 1.36022 1.48451 1.44396 1.10323 1.36012 1.44033 1.21201 0.90844 0.78392 0.77904 1.90874 1.25747 1.58096 1.61879 0.88262 0.91262 0.95035 0.96058 0.96801 0.94246 0.94933 0.93670 0.74289 0.83919 0.85304 0.91894 0.89603 0.69801 0.71963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.88 113.37 1.23 1.89 16 2 O -0.40 -13.46 10.44 -148.98 -1.56 -15.02 16 3 C 0.08 2.68 3.04 31.87 0.10 2.78 16 4 H 0.10 2.73 7.74 -2.39 -0.02 2.71 16 5 C 0.17 8.34 5.14 86.73 0.45 8.79 16 6 N -0.62 -32.20 3.39 -691.97 -2.35 -34.55 16 7 C -0.24 -13.81 10.28 84.03 0.86 -12.94 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 10 N -0.95 -56.93 10.31 21.65 0.22 -56.70 16 11 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 15 C 0.13 5.40 6.93 86.86 0.60 6.01 16 16 C 0.15 5.26 3.05 46.47 0.14 5.40 16 17 H 0.07 2.85 7.73 -2.39 -0.02 2.83 16 18 N -0.70 -15.37 5.23 -435.54 -2.28 -17.65 16 19 C 0.51 11.04 7.83 87.66 0.69 11.73 16 20 O -0.59 -20.00 15.73 -3.03 -0.05 -20.04 16 21 C -0.12 -0.93 5.61 29.85 0.17 -0.77 16 22 C -0.10 -1.12 4.26 30.60 0.13 -0.99 16 23 C 0.11 0.62 3.67 44.37 0.16 0.78 16 24 H 0.18 -0.27 8.14 -2.39 -0.02 -0.29 16 25 N -0.70 -4.06 5.98 -459.60 -2.75 -6.81 16 26 C 0.70 9.50 9.00 179.44 1.61 11.11 16 27 O -0.59 -12.92 18.04 -3.85 -0.07 -12.99 16 28 N -0.68 -7.69 5.72 -440.68 -2.52 -10.21 16 29 C 0.53 6.69 8.17 87.88 0.72 7.41 16 30 O -0.50 -9.98 18.02 -2.87 -0.05 -10.03 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 33 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.02 1.13 7.51 -2.39 -0.02 1.11 16 35 H 0.01 0.79 7.29 -2.39 -0.02 0.77 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.42 5.45 8.52 -92.71 -0.79 4.66 16 40 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.13 0.15 7.47 -2.39 -0.02 0.14 16 42 H 0.06 1.00 8.10 -2.39 -0.02 0.99 16 43 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 44 H 0.45 0.42 8.45 -92.71 -0.78 -0.36 16 45 H 0.44 3.91 8.96 -92.71 -0.83 3.08 16 Total: -1.00 -89.25 380.05 -3.38 -92.63 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -1.34 Total: 5.36 kcal Atomic # 6 Polarization: 30.69 SS G_CDS: 7.33 Total: 38.02 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -9.67 Total: -125.92 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -1.72 Total: -58.09 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -89.25 -3.38 -92.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213829650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.247 kcal (2) G-P(sol) polarization free energy of solvation -89.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds