Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29022 * 126.43714 * 2 1 4 4 N 1.28732 * 108.81094 * 180.24694 * 3 2 1 5 5 N 1.28849 * 109.39588 * 359.74298 * 4 3 2 6 6 C 1.31067 * 107.98854 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.65918 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 90.02230 * 7 6 5 9 9 C 1.46843 * 111.00049 * 294.21372 * 8 7 6 10 10 C 1.53043 * 109.52446 * 174.16274 * 9 8 7 11 11 C 1.53115 * 109.28035 * 59.17281 * 10 9 8 12 12 N 1.46494 * 109.52364 * 182.44361 * 11 10 9 13 13 C 1.34779 * 120.00084 * 274.68094 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99998 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47080 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00000 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99990 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99576 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00509 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99612 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47122 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46913 * 120.00077 * 21 19 17 24 24 H 1.48495 * 109.47187 * 240.00308 * 21 19 17 25 25 C 1.53119 * 109.16391 * 302.35079 * 11 10 9 26 26 C 1.46842 * 111.00041 * 169.99728 * 8 7 6 27 27 H 1.08998 * 109.47013 * 270.17749 * 1 2 3 28 28 H 1.08993 * 109.47025 * 30.18281 * 1 2 3 29 29 H 1.08999 * 109.46793 * 150.18206 * 1 2 3 30 30 H 1.09002 * 109.47152 * 330.02317 * 7 6 5 31 31 H 1.09001 * 109.46980 * 210.02418 * 7 6 5 32 32 H 1.09004 * 109.46019 * 294.17499 * 9 8 7 33 33 H 1.08999 * 109.46883 * 54.14319 * 9 8 7 34 34 H 1.09007 * 109.49669 * 299.23395 * 10 9 8 35 35 H 1.09001 * 109.53519 * 179.13897 * 10 9 8 36 36 H 1.09007 * 109.57302 * 62.28363 * 11 10 9 37 37 H 0.97003 * 120.00189 * 94.68354 * 12 11 10 38 38 H 1.09002 * 109.47273 * 300.00314 * 15 13 12 39 39 H 1.08997 * 109.47246 * 60.00624 * 15 13 12 40 40 H 0.97002 * 119.99972 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.50021 * 297.71564 * 25 11 10 42 42 H 1.09003 * 109.53874 * 177.61210 * 25 11 10 43 43 H 1.08998 * 109.46877 * 305.85973 * 26 8 7 44 44 H 1.09002 * 109.46171 * 65.83843 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2314 1.0380 0.0000 4 7 3.4582 0.6482 -0.0053 5 7 3.4980 -0.6397 -0.0032 6 6 2.2645 -1.0828 0.0029 7 6 1.8264 -2.5247 0.0068 8 7 1.6899 -2.9913 1.3930 9 6 2.9921 -3.0144 2.0712 10 6 2.7936 -3.3638 3.5479 11 6 2.1158 -4.7324 3.6570 12 7 1.8703 -5.0462 5.0667 13 6 2.8394 -5.6185 5.8084 14 8 3.9147 -5.8732 5.3088 15 6 2.5870 -5.9407 7.2587 16 16 4.0680 -6.6950 7.9757 17 6 3.5079 -6.9612 9.6249 18 1 2.5067 -6.6723 9.9085 19 6 4.3533 -7.5431 10.5594 20 7 5.5734 -7.8958 10.2137 21 14 3.7598 -7.8247 12.3082 22 1 2.3609 -7.3438 12.4396 23 1 3.8157 -9.2750 12.6224 24 1 4.6306 -7.0796 13.2524 25 6 0.7844 -4.6956 2.9016 26 6 1.0412 -4.3077 1.4436 27 1 -0.3633 0.0032 1.0276 28 1 -0.3633 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 2.5702 -3.1318 -0.5093 31 1 0.8672 -2.6143 -0.5030 32 1 3.6317 -3.7631 1.6037 33 1 3.4615 -2.0341 1.9898 34 1 2.1653 -2.6079 4.0193 35 1 3.7615 -3.3960 4.0481 36 1 2.7610 -5.4952 3.2210 37 1 1.0104 -4.8422 5.4664 38 1 2.3489 -5.0242 7.7985 39 1 1.7510 -6.6358 7.3363 40 1 6.1643 -8.3021 10.8670 41 1 0.1246 -3.9608 3.3628 42 1 0.3165 -5.6794 2.9394 43 1 0.0937 -4.2667 0.9064 44 1 1.6900 -5.0504 0.9793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226145422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = 86.972963 kcal Electronic energy + Delta-G solvation = -26567.659303 eV Core-core repulsion = 22684.140659 eV Total energy + Delta-G solvation = -3883.518644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53103 -40.03824 -38.62624 -36.11227 -35.43046 -33.35464 -32.43442 -31.61354 -31.20892 -29.31850 -28.78738 -26.99383 -25.48848 -23.91665 -23.63193 -23.41880 -21.92006 -20.38396 -20.14192 -17.92299 -17.85077 -17.74693 -16.68089 -16.34363 -16.02258 -15.68511 -15.53764 -14.93753 -14.81103 -14.50491 -14.26432 -14.16160 -14.01089 -13.77467 -13.48302 -13.17387 -13.02343 -12.78995 -12.64465 -12.50954 -12.35817 -11.96793 -11.70060 -11.55324 -11.46928 -11.26234 -11.08113 -11.02889 -10.98426 -10.83948 -10.73891 -10.47973 -9.80935 -9.40106 -9.08402 -8.98250 -8.89306 -8.23660 -6.50491 -6.22319 -3.92808 0.81841 1.58740 1.86061 3.00977 3.07938 3.21064 3.21132 3.27676 3.32039 3.58663 3.69007 3.74072 4.08112 4.19712 4.36179 4.37560 4.56674 4.65709 4.66685 4.74160 4.90494 4.95309 5.02341 5.03145 5.08156 5.12933 5.21058 5.28625 5.33433 5.35998 5.52712 5.59436 5.65775 5.71992 5.75267 5.88218 5.96228 6.11879 6.13915 6.37602 6.50442 6.64171 7.59276 7.70169 8.25742 8.34818 8.60694 9.23132 10.85125 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.001856 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.742354 B =15086.599911 C =15371.492071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.299 5.299 3 N -0.096 5.096 4 N -0.074 5.074 5 N -0.298 5.298 6 C 0.193 3.807 7 C 0.134 3.866 8 N -0.538 5.538 9 C 0.055 3.945 10 C -0.126 4.126 11 C 0.146 3.854 12 N -0.735 5.735 13 C 0.533 3.467 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.122 4.122 26 C 0.062 3.938 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.939 11.781 -23.521 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.101 5.101 3 N -0.082 5.082 4 N -0.068 5.068 5 N -0.148 5.148 6 C -0.086 4.086 7 C 0.003 3.997 8 N -0.264 5.264 9 C -0.073 4.073 10 C -0.165 4.165 11 C 0.040 3.960 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.160 4.160 26 C -0.066 4.066 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.278 12.618 -24.054 31.164 hybrid contribution -2.365 -0.809 1.566 2.949 sum -17.643 11.809 -22.488 30.926 Atomic orbital electron populations 1.22390 0.71379 1.06122 1.06061 1.48355 1.10784 1.04176 1.46785 1.78904 0.98013 1.12732 1.18594 1.78659 1.09626 1.03705 1.14795 1.75064 1.17662 1.03617 1.18455 1.25851 0.86648 0.94017 1.02048 1.20469 1.02453 0.84839 0.91932 1.61971 1.24017 1.27761 1.12640 1.22185 0.88497 1.02270 0.94355 1.21989 1.02311 0.97047 0.95138 1.20916 0.96371 0.96876 0.81803 1.46052 1.17192 1.64780 1.10824 1.20324 0.83762 0.76043 0.88003 1.90702 1.24155 1.51362 1.72805 1.23534 1.07604 1.04864 0.94422 1.85410 1.11900 1.77451 1.08641 1.22903 1.02486 1.47216 0.95714 0.90892 1.25001 0.94582 0.94793 0.99277 1.70027 1.06159 1.39037 1.35020 0.86115 0.78775 0.78060 0.82524 1.19632 1.20574 1.20554 1.21853 0.97316 1.02350 0.94520 1.22044 0.99097 0.88205 0.97237 0.88014 0.87671 0.87776 0.90036 0.87954 0.93489 0.89997 0.91179 0.90243 0.89572 0.76880 0.89275 0.89277 0.92227 0.90459 0.90324 0.89916 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.15 11.25 59.85 0.67 0.82 16 2 N -0.30 -2.19 3.75 -65.03 -0.24 -2.43 16 3 N -0.10 -1.05 13.29 60.35 0.80 -0.25 16 4 N -0.07 -0.98 13.43 60.35 0.81 -0.17 16 5 N -0.30 -3.57 11.49 32.70 0.38 -3.20 16 6 C 0.19 1.60 6.74 -155.44 -1.05 0.55 16 7 C 0.13 0.68 5.31 -4.98 -0.03 0.65 16 8 N -0.54 -3.47 4.65 -236.11 -1.10 -4.57 16 9 C 0.05 0.52 5.31 -3.83 -0.02 0.50 16 10 C -0.13 -1.40 5.67 -26.65 -0.15 -1.55 16 11 C 0.15 1.56 2.52 -67.81 -0.17 1.39 16 12 N -0.74 -9.19 5.08 -53.69 -0.27 -9.46 16 13 C 0.53 9.63 7.82 -10.98 -0.09 9.55 16 14 O -0.52 -11.45 15.52 5.56 0.09 -11.37 16 15 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.12 -0.81 5.57 -26.65 -0.15 -0.96 16 26 C 0.06 0.32 5.46 -3.84 -0.02 0.30 16 27 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 29 H 0.10 -0.10 7.14 -51.93 -0.37 -0.48 16 30 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.10 0.16 7.01 -51.93 -0.36 -0.21 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.93 6.45 -51.93 -0.33 0.59 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 37 H 0.40 3.81 8.61 -40.82 -0.35 3.46 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.22 8.02 -51.93 -0.42 -0.19 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -38.23 379.13 -7.33 -45.56 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.42 Total: -2.37 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.58 Total: -4.52 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 1.11 Total: -45.52 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.23 -7.33 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226145422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.531 kcal (2) G-P(sol) polarization free energy of solvation -38.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds