Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29022 * 126.43714 * 2 1 4 4 N 1.28732 * 108.81094 * 180.24694 * 3 2 1 5 5 N 1.28849 * 109.39588 * 359.74298 * 4 3 2 6 6 C 1.31067 * 107.98854 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.65918 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 90.02230 * 7 6 5 9 9 C 1.46843 * 111.00049 * 294.21372 * 8 7 6 10 10 C 1.53043 * 109.52446 * 174.16274 * 9 8 7 11 11 C 1.53115 * 109.28035 * 59.17281 * 10 9 8 12 12 N 1.46494 * 109.52364 * 182.44361 * 11 10 9 13 13 C 1.34779 * 120.00084 * 274.68094 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99998 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47080 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00000 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99990 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99576 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00509 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99612 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47122 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46913 * 120.00077 * 21 19 17 24 24 H 1.48495 * 109.47187 * 240.00308 * 21 19 17 25 25 C 1.53119 * 109.16391 * 302.35079 * 11 10 9 26 26 C 1.46842 * 111.00041 * 169.99728 * 8 7 6 27 27 H 1.08998 * 109.47013 * 270.17749 * 1 2 3 28 28 H 1.08993 * 109.47025 * 30.18281 * 1 2 3 29 29 H 1.08999 * 109.46793 * 150.18206 * 1 2 3 30 30 H 1.09002 * 109.47152 * 330.02317 * 7 6 5 31 31 H 1.09001 * 109.46980 * 210.02418 * 7 6 5 32 32 H 1.09004 * 109.46019 * 294.17499 * 9 8 7 33 33 H 1.08999 * 109.46883 * 54.14319 * 9 8 7 34 34 H 1.09007 * 109.49669 * 299.23395 * 10 9 8 35 35 H 1.09001 * 109.53519 * 179.13897 * 10 9 8 36 36 H 1.09007 * 109.57302 * 62.28363 * 11 10 9 37 37 H 0.97003 * 120.00189 * 94.68354 * 12 11 10 38 38 H 1.09002 * 109.47273 * 300.00314 * 15 13 12 39 39 H 1.08997 * 109.47246 * 60.00624 * 15 13 12 40 40 H 0.97002 * 119.99972 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.50021 * 297.71564 * 25 11 10 42 42 H 1.09003 * 109.53874 * 177.61210 * 25 11 10 43 43 H 1.08998 * 109.46877 * 305.85973 * 26 8 7 44 44 H 1.09002 * 109.46171 * 65.83843 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2314 1.0380 0.0000 4 7 3.4582 0.6482 -0.0053 5 7 3.4980 -0.6397 -0.0032 6 6 2.2645 -1.0828 0.0029 7 6 1.8264 -2.5247 0.0068 8 7 1.6899 -2.9913 1.3930 9 6 2.9921 -3.0144 2.0712 10 6 2.7936 -3.3638 3.5479 11 6 2.1158 -4.7324 3.6570 12 7 1.8703 -5.0462 5.0667 13 6 2.8394 -5.6185 5.8084 14 8 3.9147 -5.8732 5.3088 15 6 2.5870 -5.9407 7.2587 16 16 4.0680 -6.6950 7.9757 17 6 3.5079 -6.9612 9.6249 18 1 2.5067 -6.6723 9.9085 19 6 4.3533 -7.5431 10.5594 20 7 5.5734 -7.8958 10.2137 21 14 3.7598 -7.8247 12.3082 22 1 2.3609 -7.3438 12.4396 23 1 3.8157 -9.2750 12.6224 24 1 4.6306 -7.0796 13.2524 25 6 0.7844 -4.6956 2.9016 26 6 1.0412 -4.3077 1.4436 27 1 -0.3633 0.0032 1.0276 28 1 -0.3633 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 2.5702 -3.1318 -0.5093 31 1 0.8672 -2.6143 -0.5030 32 1 3.6317 -3.7631 1.6037 33 1 3.4615 -2.0341 1.9898 34 1 2.1653 -2.6079 4.0193 35 1 3.7615 -3.3960 4.0481 36 1 2.7610 -5.4952 3.2210 37 1 1.0104 -4.8422 5.4664 38 1 2.3489 -5.0242 7.7985 39 1 1.7510 -6.6358 7.3363 40 1 6.1643 -8.3021 10.8670 41 1 0.1246 -3.9608 3.3628 42 1 0.3165 -5.6794 2.9394 43 1 0.0937 -4.2667 0.9064 44 1 1.6900 -5.0504 0.9793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226145422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = 55.805780 kcal Electronic energy + Delta-G solvation = -26569.010813 eV Core-core repulsion = 22684.140659 eV Total energy + Delta-G solvation = -3884.870154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.21162 -41.06411 -39.64968 -36.74198 -36.33104 -34.59319 -34.22938 -32.59972 -31.86764 -30.51434 -29.31774 -27.82398 -27.52202 -24.59804 -24.38982 -24.11186 -22.52526 -21.65468 -20.99402 -19.78902 -18.45133 -18.34436 -17.79689 -17.60712 -16.88967 -16.75898 -16.48307 -16.34497 -16.02018 -15.85434 -15.05232 -14.84837 -14.72961 -14.69861 -14.51623 -14.39183 -14.05764 -13.60199 -13.49969 -13.33791 -13.16613 -13.08185 -12.93310 -12.88681 -12.63952 -12.41819 -12.22643 -12.18067 -11.88159 -11.80670 -11.71449 -11.55463 -11.16605 -11.16245 -10.89283 -10.27286 -10.07576 -9.51746 -8.67436 -8.35385 -6.13491 0.19655 1.08193 1.19677 1.27001 1.41047 1.47202 1.58063 1.62325 2.25355 2.30032 2.71224 2.98817 3.06587 3.29143 3.31734 3.70402 3.78501 3.88748 3.98448 4.06385 4.19146 4.25818 4.29626 4.32493 4.34487 4.41906 4.49216 4.50535 4.54242 4.64759 4.67865 4.72082 4.82122 4.89068 4.93259 5.03520 5.15423 5.25452 5.28226 5.41490 5.54491 5.79066 5.95380 6.19433 6.54376 7.05970 7.27870 7.53158 8.74057 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.001856 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.742354 B =15086.599911 C =15371.492071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.286 5.286 3 N -0.112 5.112 4 N -0.118 5.118 5 N -0.337 5.337 6 C 0.197 3.803 7 C 0.135 3.865 8 N -0.532 5.532 9 C 0.065 3.935 10 C -0.119 4.119 11 C 0.144 3.856 12 N -0.708 5.708 13 C 0.533 3.467 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.155 6.155 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.273 1.273 24 H -0.275 1.275 25 C -0.112 4.112 26 C 0.062 3.938 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.127 0.873 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.799 11.683 -24.128 35.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.089 5.089 3 N -0.099 5.099 4 N -0.112 5.112 5 N -0.188 5.188 6 C -0.082 4.082 7 C 0.005 3.995 8 N -0.258 5.258 9 C -0.064 4.064 10 C -0.159 4.159 11 C 0.039 3.961 12 N -0.361 5.361 13 C 0.319 3.681 14 O -0.444 6.444 15 C -0.280 4.280 16 S 0.072 5.928 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.150 4.150 26 C -0.065 4.065 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.161 0.839 30 H 0.100 0.900 31 H 0.171 0.829 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.145 0.855 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.224 12.549 -24.688 34.293 hybrid contribution -0.984 -0.727 1.646 2.051 sum -21.208 11.822 -23.042 33.473 Atomic orbital electron populations 1.22988 0.68053 1.08734 1.07536 1.48748 1.12371 1.03006 1.44772 1.78780 0.97964 1.14236 1.18899 1.78617 1.10972 1.04590 1.16975 1.74953 1.20378 1.03514 1.19916 1.26349 0.85815 0.95389 1.00622 1.20781 1.05093 0.82435 0.91214 1.61936 1.21561 1.28838 1.13460 1.21919 0.90321 1.00588 0.93557 1.21863 1.00220 0.97615 0.96162 1.21101 0.98899 0.95466 0.80636 1.45814 1.16579 1.62385 1.11338 1.20086 0.84011 0.76378 0.87616 1.90694 1.26397 1.53871 1.73475 1.23375 1.03988 1.05347 0.95307 1.85617 1.18046 1.78988 1.10180 1.23233 1.02950 1.47208 0.95816 0.89838 1.26159 0.94578 0.94220 1.04402 1.70195 1.07743 1.40085 1.36820 0.84888 0.78863 0.78134 0.75945 1.17898 1.19878 1.20058 1.21846 0.94377 1.03853 0.94930 1.22200 1.00853 0.87031 0.96435 0.86932 0.86494 0.83941 0.89958 0.82857 0.94542 0.92159 0.90638 0.94455 0.92134 0.74591 0.87466 0.87004 0.92021 0.88806 0.88880 0.85484 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.02 11.25 127.77 1.44 1.41 16 2 N -0.29 -3.63 3.75 -359.65 -1.35 -4.98 16 3 N -0.11 -2.43 13.29 37.02 0.49 -1.94 16 4 N -0.12 -3.25 13.43 37.01 0.50 -2.75 16 5 N -0.34 -8.31 11.49 -50.45 -0.58 -8.89 16 6 C 0.20 2.95 6.74 138.14 0.93 3.88 16 7 C 0.13 0.88 5.31 85.56 0.45 1.34 16 8 N -0.53 -5.19 4.65 -900.93 -4.19 -9.38 16 9 C 0.07 1.23 5.31 86.33 0.46 1.69 16 10 C -0.12 -2.69 5.67 30.65 0.17 -2.52 16 11 C 0.14 2.91 2.52 45.07 0.11 3.02 16 12 N -0.71 -16.64 5.08 -442.16 -2.25 -18.89 16 13 C 0.53 19.35 7.82 87.66 0.69 20.03 16 14 O -0.57 -26.28 15.52 -3.02 -0.05 -26.33 16 15 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 16 S -0.16 -8.68 20.57 -56.49 -1.16 -9.85 16 17 C -0.54 -31.13 9.50 67.95 0.65 -30.49 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.63 5.49 84.86 0.47 1.09 16 20 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.11 -1.03 5.57 30.65 0.17 -0.86 16 26 C 0.06 0.35 5.46 86.33 0.47 0.82 16 27 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.14 -1.14 7.14 -2.39 -0.02 -1.16 16 30 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 31 H 0.15 -0.53 7.01 -2.39 -0.02 -0.55 16 32 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 1.43 6.45 -2.39 -0.02 1.41 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.59 7.58 -2.38 -0.02 1.57 16 37 H 0.42 6.67 8.61 -92.71 -0.80 5.88 16 38 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.13 -0.25 8.02 -2.39 -0.02 -0.27 16 44 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -91.78 379.13 0.41 -91.37 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.23 Total: 7.24 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 6.45 Total: -5.18 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -7.09 Total: -102.97 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.85 kcal Total: -91.78 0.41 -91.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226145422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.174 kcal (2) G-P(sol) polarization free energy of solvation -91.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds