Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00276 * 2 1 4 4 C 1.52994 * 109.47360 * 270.00354 * 3 2 1 5 5 H 1.09002 * 112.74725 * 285.33312 * 4 3 2 6 6 C 1.53518 * 113.53032 * 154.51175 * 4 3 2 7 7 C 1.53518 * 83.57347 * 219.20266 * 6 4 3 8 8 N 1.47482 * 87.93406 * 26.02360 * 7 6 4 9 9 C 1.46900 * 110.99645 * 221.29972 * 8 7 6 10 10 C 1.50692 * 109.47092 * 285.96646 * 9 8 7 11 11 N 1.33325 * 126.54792 * 90.02675 * 10 9 8 12 12 N 1.29000 * 107.35284 * 180.02562 * 11 10 9 13 13 N 1.28783 * 108.72696 * 359.97438 * 12 11 10 14 14 C 1.46493 * 125.44503 * 180.02562 * 13 12 11 15 15 N 1.28875 * 109.10268 * 359.73542 * 13 12 11 16 16 C 1.34777 * 119.99885 * 180.02562 * 2 1 3 17 17 O 1.21283 * 120.00193 * 179.97438 * 16 2 1 18 18 C 1.50699 * 120.00228 * 359.97438 * 16 2 1 19 19 S 1.80994 * 109.47285 * 180.02562 * 18 16 2 20 20 C 1.76199 * 99.99832 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00297 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99908 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00120 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46922 * 90.00563 * 24 22 20 26 26 H 1.48498 * 109.47094 * 210.00047 * 24 22 20 27 27 H 1.48499 * 109.47288 * 330.00296 * 24 22 20 28 28 H 1.08999 * 109.47702 * 89.99259 * 1 2 3 29 29 H 1.08992 * 109.47200 * 209.99843 * 1 2 3 30 30 H 1.09007 * 109.46689 * 329.99597 * 1 2 3 31 31 H 1.09005 * 109.46859 * 150.00278 * 3 2 1 32 32 H 1.09003 * 109.46700 * 30.00585 * 3 2 1 33 33 H 1.09005 * 114.16809 * 332.84436 * 6 4 3 34 34 H 1.08997 * 114.17359 * 105.55059 * 6 4 3 35 35 H 1.09004 * 113.47197 * 271.25569 * 7 6 4 36 36 H 1.08999 * 113.52743 * 140.80039 * 7 6 4 37 37 H 1.08992 * 109.47311 * 45.97169 * 9 8 7 38 38 H 1.08999 * 109.46597 * 165.97338 * 9 8 7 39 39 H 1.09001 * 109.47526 * 89.97889 * 14 13 12 40 40 H 1.09003 * 109.47277 * 209.98073 * 14 13 12 41 41 H 1.09005 * 109.47544 * 329.98088 * 14 13 12 42 42 H 1.08997 * 109.46907 * 300.00381 * 18 16 2 43 43 H 1.09005 * 109.46965 * 60.00158 * 18 16 2 44 44 H 0.97001 * 120.00210 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 3.2370 1.1304 -1.9285 6 6 2.6291 3.2276 -1.5967 7 6 1.8156 3.0178 -2.8816 8 7 1.2223 1.8256 -2.2478 9 6 1.1153 0.7180 -3.2067 10 6 -0.0100 0.9945 -4.1700 11 7 0.0810 1.6407 -5.3327 12 7 -1.0997 1.6666 -5.8519 13 7 -1.9139 1.0627 -5.0576 14 6 -3.3485 0.8789 -5.2905 15 7 -1.2638 0.6408 -4.0280 16 6 2.1388 -1.1672 -0.0005 17 8 3.3516 -1.1673 -0.0010 18 6 1.3853 -2.4723 -0.0005 19 16 2.5615 -3.8480 -0.0005 20 6 1.4414 -5.2081 -0.0013 21 1 0.3761 -5.0304 -0.0020 22 6 1.9281 -6.5080 -0.0020 23 7 3.2264 -6.7247 -0.0017 24 14 0.7405 -7.9500 -0.0021 25 1 0.4253 -8.3316 -1.4023 26 1 1.3620 -9.1032 0.6971 27 1 -0.5099 -7.5616 0.6985 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.1500 1.1383 0.5138 32 1 1.6085 2.0284 0.5139 33 1 2.1170 3.8162 -0.8354 34 1 3.6588 3.5422 -1.7666 35 1 2.4302 2.7867 -3.7516 36 1 1.0940 3.8117 -3.0742 37 1 2.0507 0.6231 -3.7581 38 1 0.9144 -0.2091 -2.6698 39 1 -3.5127 -0.0552 -5.8278 40 1 -3.8705 0.8446 -4.3342 41 1 -3.7300 1.7106 -5.8830 42 1 0.7590 -2.5302 0.8896 43 1 0.7583 -2.5299 -0.8903 44 1 3.5666 -7.6331 -0.0026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = 145.286279 kcal Electronic energy + Delta-G solvation = -27508.950022 eV Core-core repulsion = 23627.960034 eV Total energy + Delta-G solvation = -3880.989989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.50586 -40.67113 -38.96196 -35.51402 -35.06553 -33.77550 -32.41647 -31.43226 -30.18965 -28.64202 -27.94413 -26.16318 -25.52925 -25.45400 -23.36440 -23.18963 -22.13791 -19.99433 -19.06738 -17.79671 -17.72591 -17.58124 -16.59615 -16.38276 -16.13109 -15.67190 -15.25322 -14.79455 -14.60149 -14.27555 -13.99253 -13.88400 -13.73839 -13.55785 -13.23381 -13.00443 -12.87453 -12.57554 -12.40481 -12.22762 -11.94188 -11.84748 -11.68541 -11.55273 -11.36365 -11.15338 -11.06179 -11.05266 -11.01044 -10.81513 -10.69666 -10.28740 -9.78677 -9.32012 -9.22077 -9.05473 -8.36317 -8.20361 -6.48244 -6.20493 -3.90601 1.02834 1.71628 1.94733 2.99126 3.10039 3.22499 3.26911 3.30857 3.53460 3.64490 3.87328 4.05838 4.21625 4.27114 4.47954 4.52814 4.61814 4.77513 4.92634 5.00879 5.10445 5.14553 5.16940 5.19264 5.27248 5.33175 5.47852 5.49930 5.54074 5.60377 5.61382 5.66449 5.67945 5.80358 5.91669 5.92966 5.95406 5.97268 6.09774 6.18089 6.70595 6.78281 7.60514 7.63666 8.17306 8.36495 8.61684 9.24921 10.86925 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.003218 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.896474 B = 8699.317039 C =10625.876972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.617 5.617 3 C 0.137 3.863 4 C 0.016 3.984 5 H 0.089 0.911 6 C -0.136 4.136 7 C -0.001 4.001 8 N -0.456 5.456 9 C 0.117 3.883 10 C 0.182 3.818 11 N -0.281 5.281 12 N -0.067 5.067 13 N -0.143 5.143 14 C 0.096 3.904 15 N -0.290 5.290 16 C 0.530 3.470 17 O -0.519 6.519 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 21.386 -6.866 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.352 5.352 3 C 0.013 3.987 4 C -0.094 4.094 5 H 0.107 0.893 6 C -0.174 4.174 7 C -0.130 4.130 8 N -0.180 5.180 9 C -0.014 4.014 10 C -0.101 4.101 11 N -0.153 5.153 12 N -0.061 5.061 13 N -0.055 5.055 14 C -0.044 4.044 15 N -0.141 5.141 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.855 21.448 -7.110 25.068 hybrid contribution -1.549 -1.370 -0.243 2.082 sum -12.404 20.078 -7.354 24.720 Atomic orbital electron populations 1.21751 0.79306 1.02312 1.02190 1.47764 1.07016 1.05290 1.75165 1.21363 0.98100 0.85049 0.94159 1.23909 0.91947 0.96839 0.96728 0.89328 1.23177 1.00921 0.95259 0.98089 1.23764 0.97571 0.94845 0.96792 1.68978 1.32284 1.02697 1.14031 1.20897 0.91904 0.97591 0.91057 1.25289 0.92269 0.97977 0.94592 1.75820 1.12780 1.18480 1.08213 1.78936 0.94997 1.13776 1.18392 1.50044 1.11924 1.33122 1.10458 1.22419 0.70807 1.05526 1.05697 1.74739 1.06686 1.21639 1.11062 1.20349 0.87925 0.84662 0.75255 1.90688 1.13699 1.86868 1.48076 1.23551 1.04469 0.97342 1.04639 1.85366 1.08130 0.93376 1.96694 1.22859 0.94309 0.92241 1.58820 0.91002 1.24980 0.95632 0.98337 0.94582 1.70017 1.11720 1.21610 1.46949 0.86193 0.80334 0.80801 0.78323 1.20320 1.20750 1.19683 0.92195 0.91412 0.91595 0.89357 0.90289 0.88742 0.90125 0.90643 0.90119 0.90636 0.87423 0.88031 0.87053 0.87088 0.89318 0.89489 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 9.78 59.84 0.59 1.59 16 2 N -0.62 -8.56 2.72 -181.57 -0.49 -9.05 16 3 C 0.14 1.59 5.59 -4.04 -0.02 1.56 16 4 C 0.02 0.17 3.36 -71.43 -0.24 -0.07 16 5 H 0.09 1.09 7.77 -51.93 -0.40 0.69 16 6 C -0.14 -1.09 8.00 -26.19 -0.21 -1.30 16 7 C 0.00 -0.01 7.30 -7.54 -0.06 -0.06 16 8 N -0.46 -4.94 5.50 -237.92 -1.31 -6.25 16 9 C 0.12 1.44 5.08 -4.98 -0.03 1.41 16 10 C 0.18 2.37 7.51 -156.62 -1.18 1.20 16 11 N -0.28 -3.83 12.50 32.45 0.41 -3.43 16 12 N -0.07 -0.83 13.25 60.35 0.80 -0.03 16 13 N -0.14 -1.47 4.40 -16.69 -0.07 -1.55 16 14 C 0.10 0.40 11.63 59.84 0.70 1.10 16 15 N -0.29 -3.61 12.13 32.47 0.39 -3.22 16 16 C 0.53 9.88 7.69 -10.99 -0.08 9.79 16 17 O -0.52 -11.49 15.44 5.56 0.09 -11.41 16 18 C -0.15 -3.05 4.71 36.00 0.17 -2.88 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.06 0.71 6.57 -51.93 -0.34 0.36 16 29 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 30 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 31 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 32 H 0.08 0.75 7.65 -51.93 -0.40 0.35 16 33 H 0.09 0.68 7.95 -51.93 -0.41 0.26 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.92 7.56 -51.93 -0.39 0.52 16 38 H 0.11 1.47 7.02 -51.93 -0.36 1.10 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 43 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -36.76 382.60 -7.40 -44.16 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.31 Total: -1.46 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.16 Total: -0.58 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.46 Total: -48.99 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.76 -7.40 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.444 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds