Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00276 * 2 1 4 4 C 1.52994 * 109.47360 * 270.00354 * 3 2 1 5 5 H 1.09002 * 112.74725 * 285.33312 * 4 3 2 6 6 C 1.53518 * 113.53032 * 154.51175 * 4 3 2 7 7 C 1.53518 * 83.57347 * 219.20266 * 6 4 3 8 8 N 1.47482 * 87.93406 * 26.02360 * 7 6 4 9 9 C 1.46900 * 110.99645 * 221.29972 * 8 7 6 10 10 C 1.50692 * 109.47092 * 285.96646 * 9 8 7 11 11 N 1.33325 * 126.54792 * 90.02675 * 10 9 8 12 12 N 1.29000 * 107.35284 * 180.02562 * 11 10 9 13 13 N 1.28783 * 108.72696 * 359.97438 * 12 11 10 14 14 C 1.46493 * 125.44503 * 180.02562 * 13 12 11 15 15 N 1.28875 * 109.10268 * 359.73542 * 13 12 11 16 16 C 1.34777 * 119.99885 * 180.02562 * 2 1 3 17 17 O 1.21283 * 120.00193 * 179.97438 * 16 2 1 18 18 C 1.50699 * 120.00228 * 359.97438 * 16 2 1 19 19 S 1.80994 * 109.47285 * 180.02562 * 18 16 2 20 20 C 1.76199 * 99.99832 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00297 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99908 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00120 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46922 * 90.00563 * 24 22 20 26 26 H 1.48498 * 109.47094 * 210.00047 * 24 22 20 27 27 H 1.48499 * 109.47288 * 330.00296 * 24 22 20 28 28 H 1.08999 * 109.47702 * 89.99259 * 1 2 3 29 29 H 1.08992 * 109.47200 * 209.99843 * 1 2 3 30 30 H 1.09007 * 109.46689 * 329.99597 * 1 2 3 31 31 H 1.09005 * 109.46859 * 150.00278 * 3 2 1 32 32 H 1.09003 * 109.46700 * 30.00585 * 3 2 1 33 33 H 1.09005 * 114.16809 * 332.84436 * 6 4 3 34 34 H 1.08997 * 114.17359 * 105.55059 * 6 4 3 35 35 H 1.09004 * 113.47197 * 271.25569 * 7 6 4 36 36 H 1.08999 * 113.52743 * 140.80039 * 7 6 4 37 37 H 1.08992 * 109.47311 * 45.97169 * 9 8 7 38 38 H 1.08999 * 109.46597 * 165.97338 * 9 8 7 39 39 H 1.09001 * 109.47526 * 89.97889 * 14 13 12 40 40 H 1.09003 * 109.47277 * 209.98073 * 14 13 12 41 41 H 1.09005 * 109.47544 * 329.98088 * 14 13 12 42 42 H 1.08997 * 109.46907 * 300.00381 * 18 16 2 43 43 H 1.09005 * 109.46965 * 60.00158 * 18 16 2 44 44 H 0.97001 * 120.00210 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 3.2370 1.1304 -1.9285 6 6 2.6291 3.2276 -1.5967 7 6 1.8156 3.0178 -2.8816 8 7 1.2223 1.8256 -2.2478 9 6 1.1153 0.7180 -3.2067 10 6 -0.0100 0.9945 -4.1700 11 7 0.0810 1.6407 -5.3327 12 7 -1.0997 1.6666 -5.8519 13 7 -1.9139 1.0627 -5.0576 14 6 -3.3485 0.8789 -5.2905 15 7 -1.2638 0.6408 -4.0280 16 6 2.1388 -1.1672 -0.0005 17 8 3.3516 -1.1673 -0.0010 18 6 1.3853 -2.4723 -0.0005 19 16 2.5615 -3.8480 -0.0005 20 6 1.4414 -5.2081 -0.0013 21 1 0.3761 -5.0304 -0.0020 22 6 1.9281 -6.5080 -0.0020 23 7 3.2264 -6.7247 -0.0017 24 14 0.7405 -7.9500 -0.0021 25 1 0.4253 -8.3316 -1.4023 26 1 1.3620 -9.1032 0.6971 27 1 -0.5099 -7.5616 0.6985 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.1500 1.1383 0.5138 32 1 1.6085 2.0284 0.5139 33 1 2.1170 3.8162 -0.8354 34 1 3.6588 3.5422 -1.7666 35 1 2.4302 2.7867 -3.7516 36 1 1.0940 3.8117 -3.0742 37 1 2.0507 0.6231 -3.7581 38 1 0.9144 -0.2091 -2.6698 39 1 -3.5127 -0.0552 -5.8278 40 1 -3.8705 0.8446 -4.3342 41 1 -3.7300 1.7106 -5.8830 42 1 0.7590 -2.5302 0.8896 43 1 0.7583 -2.5299 -0.8903 44 1 3.5666 -7.6331 -0.0026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = 117.262595 kcal Electronic energy + Delta-G solvation = -27510.165221 eV Core-core repulsion = 23627.960034 eV Total energy + Delta-G solvation = -3882.205187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.39385 -41.61294 -40.27911 -36.45844 -36.19732 -34.69149 -34.58373 -32.34497 -31.42823 -29.34100 -29.09782 -27.68131 -27.18630 -26.38134 -24.31168 -24.01593 -23.04720 -20.92213 -20.44039 -19.47441 -18.56677 -18.50563 -17.97445 -17.32592 -17.20058 -16.89191 -16.83545 -16.32182 -15.91229 -15.64335 -15.17221 -14.65081 -14.55349 -14.39159 -14.30458 -14.22832 -14.14574 -13.82350 -13.46557 -13.28382 -13.16165 -13.05743 -12.89771 -12.70541 -12.64806 -12.56407 -12.41640 -12.20092 -12.04570 -11.92726 -11.76541 -11.59932 -11.14386 -11.12446 -10.81748 -10.26059 -10.14069 -9.51201 -8.66131 -8.34510 -6.12230 0.15444 0.97558 1.10895 1.26807 1.41501 1.46340 1.56715 1.62398 2.16833 2.28004 2.66114 2.99513 3.02101 3.22046 3.28251 3.49683 3.72895 3.85332 3.93199 4.14971 4.19839 4.22507 4.24678 4.30190 4.33957 4.39495 4.45114 4.50910 4.52072 4.57907 4.63058 4.74673 4.78463 4.78852 4.87536 5.01059 5.03992 5.16256 5.21586 5.23419 5.41588 5.62612 5.88120 6.19757 6.35661 7.06761 7.20440 7.26407 8.74679 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.003218 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.896474 B = 8699.317039 C =10625.876972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.601 5.601 3 C 0.135 3.865 4 C 0.013 3.987 5 H 0.065 0.935 6 C -0.115 4.115 7 C 0.000 4.000 8 N -0.453 5.453 9 C 0.123 3.877 10 C 0.173 3.827 11 N -0.306 5.306 12 N -0.079 5.079 13 N -0.128 5.128 14 C 0.078 3.922 15 N -0.302 5.302 16 C 0.530 3.470 17 O -0.563 6.563 18 C -0.124 4.124 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.257 1.257 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 22.730 -6.671 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.334 5.334 3 C 0.012 3.988 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.153 4.153 7 C -0.129 4.129 8 N -0.177 5.177 9 C -0.009 4.009 10 C -0.110 4.110 11 N -0.177 5.177 12 N -0.072 5.072 13 N -0.043 5.043 14 C -0.059 4.059 15 N -0.154 5.154 16 C 0.318 3.682 17 O -0.442 6.442 18 C -0.275 4.275 19 S 0.079 5.921 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.181 1.181 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.916 22.848 -6.929 27.635 hybrid contribution -0.747 -1.659 -0.347 1.852 sum -14.663 21.189 -7.276 26.775 Atomic orbital electron populations 1.21938 0.77310 1.03853 1.02632 1.47728 1.08183 1.04629 1.72815 1.21597 0.97882 0.84292 0.95009 1.23850 0.91413 0.98705 0.95820 0.91647 1.23168 1.01754 0.92964 0.97391 1.23756 0.97706 0.94098 0.97309 1.68982 1.32240 1.02592 1.13872 1.20752 0.91588 0.97496 0.91038 1.25323 0.92666 0.98364 0.94680 1.75778 1.13714 1.19522 1.08667 1.78856 0.95055 1.14482 1.18810 1.50576 1.13328 1.31164 1.09217 1.23035 0.67845 1.07537 1.07493 1.74696 1.06613 1.22080 1.12052 1.20053 0.87257 0.85393 0.75526 1.90674 1.15387 1.87449 1.50649 1.23368 1.02705 0.95503 1.05894 1.85518 1.12504 0.97131 1.96992 1.23185 0.94583 0.92756 1.58843 0.90147 1.26101 0.97556 1.01601 0.93744 1.70180 1.14070 1.22441 1.48025 0.84987 0.77999 0.76442 0.78766 1.19401 1.20209 1.18130 0.92231 0.91341 0.88619 0.90738 0.86965 0.86809 0.88793 0.91266 0.89858 0.91418 0.89076 0.86279 0.85285 0.84586 0.87712 0.88290 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 9.78 127.77 1.25 2.99 16 2 N -0.60 -15.95 2.72 -846.76 -2.31 -18.25 16 3 C 0.13 2.91 5.59 86.38 0.48 3.39 16 4 C 0.01 0.26 3.36 42.19 0.14 0.40 16 5 H 0.07 1.66 7.77 -2.39 -0.02 1.65 16 6 C -0.11 -1.57 8.00 30.94 0.25 -1.32 16 7 C 0.00 0.00 7.30 83.58 0.61 0.61 16 8 N -0.45 -9.30 5.50 -906.65 -4.98 -14.29 16 9 C 0.12 3.04 5.08 85.55 0.43 3.48 16 10 C 0.17 4.46 7.51 138.54 1.04 5.50 16 11 N -0.31 -8.28 12.50 -51.26 -0.64 -8.93 16 12 N -0.08 -1.87 13.25 37.02 0.49 -1.38 16 13 N -0.13 -2.44 4.40 -206.73 -0.91 -3.35 16 14 C 0.08 0.46 11.63 127.77 1.49 1.95 16 15 N -0.30 -7.19 12.13 -51.20 -0.62 -7.81 16 16 C 0.53 19.92 7.69 87.66 0.67 20.60 16 17 O -0.56 -25.86 15.44 -3.04 -0.05 -25.91 16 18 C -0.12 -5.06 4.71 71.24 0.34 -4.72 16 19 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 20 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.85 5.49 84.86 0.47 1.31 16 23 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 24 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H 0.06 1.28 6.57 -2.39 -0.02 1.27 16 29 H 0.07 1.42 6.44 -2.39 -0.02 1.40 16 30 H 0.10 1.45 7.89 -2.38 -0.02 1.43 16 31 H 0.07 1.87 7.42 -2.38 -0.02 1.85 16 32 H 0.11 1.71 7.65 -2.39 -0.02 1.69 16 33 H 0.11 1.18 7.95 -2.38 -0.02 1.16 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.31 7.70 -2.38 -0.02 1.29 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.74 7.56 -2.39 -0.02 1.72 16 38 H 0.09 2.53 7.02 -2.39 -0.02 2.52 16 39 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.14 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.10 3.93 7.40 -2.40 -0.02 3.91 16 43 H 0.10 3.79 8.11 -2.39 -0.02 3.77 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -82.91 382.60 0.97 -81.95 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.02 Total: 14.28 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 7.82 Total: 3.34 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -8.68 Total: -109.99 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -82.91 0.97 -81.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.209 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds