Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08998 * 112.95952 * 74.67031 * 4 3 2 6 6 C 1.53941 * 113.75466 * 206.31494 * 4 3 2 7 7 C 1.53942 * 86.34015 * 138.03766 * 6 4 3 8 8 N 1.47963 * 113.75985 * 303.01608 * 4 3 2 9 9 C 1.46897 * 110.99759 * 108.09983 * 8 4 3 10 10 C 1.50697 * 109.47171 * 170.00325 * 9 8 4 11 11 N 1.33319 * 126.54890 * 269.69041 * 10 9 8 12 12 N 1.28991 * 107.35505 * 179.83665 * 11 10 9 13 13 N 1.28785 * 108.72473 * 0.42922 * 12 11 10 14 14 C 1.46503 * 125.44657 * 179.72700 * 13 12 11 15 15 N 1.28881 * 109.10359 * 359.72822 * 13 12 11 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99782 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00188 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47104 * 89.99919 * 24 22 20 26 26 H 1.48498 * 109.46993 * 210.00231 * 24 22 20 27 27 H 1.48504 * 109.47061 * 330.00171 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09005 * 113.73275 * 252.39051 * 6 4 3 34 34 H 1.08996 * 113.73306 * 23.57325 * 6 4 3 35 35 H 1.08999 * 113.75686 * 90.59631 * 7 6 4 36 36 H 1.08997 * 113.75955 * 221.85080 * 7 6 4 37 37 H 1.09001 * 109.47145 * 290.00665 * 9 8 4 38 38 H 1.09007 * 109.46961 * 50.00350 * 9 8 4 39 39 H 1.08992 * 109.47112 * 270.00014 * 14 13 12 40 40 H 1.08995 * 109.47018 * 30.00355 * 14 13 12 41 41 H 1.09008 * 109.46840 * 150.00426 * 14 13 12 42 42 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 43 43 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 44 44 H 0.96994 * 120.00208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.2366 1.1324 1.9317 6 6 2.6104 3.2329 1.6062 7 6 1.7448 3.0872 2.8708 8 7 1.2207 1.8477 2.2505 9 6 1.1161 0.7659 3.2388 10 6 -0.0064 1.0683 4.1977 11 7 0.0889 1.7404 5.3451 12 7 -1.0911 1.7848 5.8642 13 7 -1.9077 1.1601 5.0887 14 6 -3.3417 0.9827 5.3306 15 7 -1.2617 0.7159 4.0658 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 3.2266 -6.7247 -0.0017 24 14 0.7408 -7.9501 -0.0036 25 1 0.4267 -8.3311 -1.4040 26 1 1.3618 -9.1034 0.6959 27 1 -0.5102 -7.5619 0.6962 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 3.6338 3.5485 1.8091 34 1 2.1369 3.8108 0.8126 35 1 2.3208 2.9120 3.7794 36 1 0.9989 3.8737 2.9854 37 1 0.9135 -0.1751 2.7273 38 1 2.0531 0.6854 3.7900 39 1 -3.5042 0.0631 5.8927 40 1 -3.7212 1.8297 5.9020 41 1 -3.8664 0.9232 4.3770 42 1 0.7591 -2.5302 0.8897 43 1 0.7585 -2.5298 -0.8903 44 1 3.5668 -7.6330 -0.0026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 115.237824 kcal Electronic energy + Delta-G solvation = -27464.013958 eV Core-core repulsion = 23581.720971 eV Total energy + Delta-G solvation = -3882.292987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.38552 -41.44462 -40.20881 -36.46282 -36.16611 -34.66034 -34.58266 -32.30356 -31.40400 -29.32928 -29.12555 -27.67949 -27.20022 -26.30453 -24.40203 -24.01559 -23.02339 -20.89132 -20.38343 -19.46920 -18.55711 -18.49342 -17.95376 -17.31675 -17.16165 -16.88714 -16.81490 -16.31927 -15.95275 -15.65265 -15.16145 -14.65114 -14.50673 -14.38786 -14.29778 -14.22548 -14.14885 -13.79406 -13.46832 -13.24790 -13.16028 -13.07267 -12.89736 -12.74022 -12.64979 -12.55042 -12.45374 -12.15277 -12.03571 -11.90128 -11.79807 -11.66878 -11.14134 -11.09601 -10.81307 -10.26007 -10.08384 -9.47257 -8.66000 -8.34433 -6.12133 0.16246 0.98368 1.11567 1.26930 1.41714 1.46444 1.56781 1.62880 2.16367 2.28118 2.66301 2.96697 2.99555 3.21553 3.28479 3.55058 3.72433 3.85101 3.95589 4.16244 4.19570 4.22873 4.24281 4.32438 4.36451 4.41609 4.44929 4.51653 4.52761 4.58990 4.66736 4.73528 4.76680 4.79540 4.90712 4.99852 5.04229 5.17581 5.22633 5.25479 5.41622 5.62733 5.88284 6.19840 6.36368 7.06814 7.20982 7.27376 8.74781 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.003170 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.371419 B = 8832.072333 C =10737.059103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.600 5.600 3 C 0.137 3.863 4 C 0.017 3.983 5 H 0.067 0.933 6 C -0.117 4.117 7 C 0.005 3.995 8 N -0.462 5.462 9 C 0.125 3.875 10 C 0.172 3.828 11 N -0.306 5.306 12 N -0.079 5.079 13 N -0.129 5.129 14 C 0.078 3.922 15 N -0.302 5.302 16 C 0.530 3.470 17 O -0.563 6.563 18 C -0.123 4.123 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 22.901 6.953 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.333 5.333 3 C 0.015 3.985 4 C -0.094 4.094 5 H 0.085 0.915 6 C -0.155 4.155 7 C -0.123 4.123 8 N -0.187 5.187 9 C -0.007 4.007 10 C -0.111 4.111 11 N -0.177 5.177 12 N -0.072 5.072 13 N -0.043 5.043 14 C -0.059 4.059 15 N -0.154 5.154 16 C 0.318 3.682 17 O -0.442 6.442 18 C -0.274 4.274 19 S 0.078 5.922 20 C -0.694 4.694 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.974 23.018 7.210 27.876 hybrid contribution -0.748 -1.635 0.304 1.824 sum -14.722 21.383 7.514 27.027 Atomic orbital electron populations 1.21973 0.77342 1.04243 1.02550 1.47723 1.08169 1.04580 1.72831 1.21516 0.97864 0.84372 0.94775 1.23902 0.91233 0.98533 0.95692 0.91526 1.23325 1.01334 0.92998 0.97836 1.23897 0.98017 0.93228 0.97181 1.68598 1.33533 1.02042 1.14479 1.20711 0.91512 0.97618 0.90809 1.25346 0.92593 0.98248 0.94870 1.75776 1.13746 1.19389 1.08758 1.78856 0.94991 1.14347 1.19017 1.50582 1.13378 1.30332 1.10042 1.23030 0.67911 1.07588 1.07363 1.74705 1.06760 1.22089 1.11871 1.20062 0.87257 0.85411 0.75519 1.90672 1.15394 1.87452 1.50682 1.23365 1.02695 0.95496 1.05885 1.85518 1.12521 0.97142 1.96993 1.23186 0.94580 0.92759 1.58836 0.90154 1.26105 0.97563 1.01608 0.93748 1.70180 1.14067 1.22443 1.48031 0.84981 0.77920 0.76405 0.78858 1.19197 1.20282 1.18264 0.91416 0.88565 0.91773 0.90650 0.87039 0.89262 0.87044 0.91170 0.89406 0.89187 0.91492 0.86291 0.84611 0.85307 0.88167 0.87851 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 9.92 127.77 1.27 2.93 16 2 N -0.60 -15.97 2.80 -846.74 -2.37 -18.34 16 3 C 0.14 2.97 5.57 86.38 0.48 3.45 16 4 C 0.02 0.34 3.58 45.02 0.16 0.50 16 5 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 6 C -0.12 -1.60 7.85 31.24 0.25 -1.36 16 7 C 0.01 0.09 7.49 86.36 0.65 0.74 16 8 N -0.46 -9.31 4.91 -885.18 -4.35 -13.65 16 9 C 0.12 3.04 5.45 85.56 0.47 3.51 16 10 C 0.17 4.37 7.41 138.55 1.03 5.40 16 11 N -0.31 -8.14 12.50 -51.26 -0.64 -8.78 16 12 N -0.08 -1.84 13.25 37.02 0.49 -1.35 16 13 N -0.13 -2.41 4.40 -206.73 -0.91 -3.32 16 14 C 0.08 0.44 11.63 127.77 1.49 1.93 16 15 N -0.30 -7.07 12.13 -51.20 -0.62 -7.69 16 16 C 0.53 19.94 7.69 87.66 0.67 20.62 16 17 O -0.56 -25.91 15.44 -3.02 -0.05 -25.96 16 18 C -0.12 -5.05 4.71 71.24 0.34 -4.72 16 19 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 20 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 24 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.75 7.24 -2.39 -0.02 1.73 16 30 H 0.06 1.41 6.44 -2.38 -0.02 1.40 16 31 H 0.08 1.89 7.42 -2.39 -0.02 1.88 16 32 H 0.11 1.73 7.80 -2.38 -0.02 1.71 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 1.16 7.91 -2.39 -0.02 1.15 16 35 H 0.07 1.31 7.78 -2.39 -0.02 1.29 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 2.46 8.06 -2.39 -0.02 2.44 16 38 H 0.07 1.69 7.69 -2.38 -0.02 1.67 16 39 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.14 0.10 8.14 -2.39 -0.02 0.09 16 41 H 0.13 0.31 8.14 -2.38 -0.02 0.29 16 42 H 0.10 3.82 7.40 -2.40 -0.02 3.80 16 43 H 0.10 3.90 8.11 -2.40 -0.02 3.88 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -82.62 385.01 1.62 -81.01 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.01 Total: 14.32 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 7.90 Total: 3.43 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -8.11 Total: -109.14 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -82.62 1.62 -81.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.245 kcal (2) G-P(sol) polarization free energy of solvation -82.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds