Wall clock time and date at job start Sat Apr 11 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00242 * 2 1 4 4 C 1.52995 * 109.46953 * 269.99376 * 3 2 1 5 5 H 1.09003 * 112.74735 * 284.22962 * 4 3 2 6 6 C 1.53511 * 113.47501 * 153.37881 * 4 3 2 7 7 C 1.53508 * 83.57673 * 219.20917 * 6 4 3 8 8 N 1.47476 * 87.93421 * 26.02453 * 7 6 4 9 9 C 1.46895 * 111.00462 * 221.29812 * 8 7 6 10 10 C 1.50705 * 109.46804 * 285.96913 * 9 8 7 11 11 O 1.21288 * 120.00235 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99789 * 180.02562 * 12 10 9 14 14 H 1.07991 * 120.00190 * 359.97438 * 13 12 10 15 15 C 1.38945 * 119.99784 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00016 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00301 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 59.99454 * 17 15 13 19 19 H 1.48494 * 109.47644 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.47065 * 300.00236 * 17 15 13 21 21 C 1.34773 * 119.99618 * 179.97438 * 2 1 3 22 22 O 1.21284 * 120.00285 * 180.02562 * 21 2 1 23 23 C 1.50702 * 120.00351 * 0.02562 * 21 2 1 24 24 H 1.09002 * 110.50201 * 40.69767 * 23 21 2 25 25 C 1.54086 * 110.56468 * 277.95656 * 23 21 2 26 26 O 1.45708 * 104.00962 * 241.27767 * 25 23 21 27 27 C 1.33768 * 109.47602 * 359.97438 * 26 25 23 28 28 O 1.21505 * 123.07372 * 180.02562 * 27 26 25 29 29 N 1.34326 * 113.90161 * 0.08867 * 27 26 25 30 30 H 1.08999 * 109.47473 * 270.00499 * 1 2 3 31 31 H 1.09004 * 109.46890 * 30.00784 * 1 2 3 32 32 H 1.09000 * 109.47528 * 149.99855 * 1 2 3 33 33 H 1.09002 * 109.46823 * 29.99475 * 3 2 1 34 34 H 1.09003 * 109.47356 * 149.99294 * 3 2 1 35 35 H 1.08996 * 114.17405 * 332.85917 * 6 4 3 36 36 H 1.09002 * 114.17068 * 105.56376 * 6 4 3 37 37 H 1.09006 * 113.48005 * 271.25695 * 7 6 4 38 38 H 1.09006 * 113.53405 * 140.80249 * 7 6 4 39 39 H 1.09002 * 109.47217 * 45.96869 * 9 8 7 40 40 H 1.09003 * 109.47284 * 165.97098 * 9 8 7 41 41 H 0.97002 * 119.99778 * 359.97438 * 12 10 9 42 42 H 0.96999 * 119.99912 * 180.02562 * 16 15 13 43 43 H 1.09000 * 110.52536 * 359.91006 * 25 23 21 44 44 H 1.09003 * 110.52206 * 122.65017 * 25 23 21 45 45 H 0.96998 * 125.73363 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 3.2503 1.1428 -1.9221 6 6 2.6016 3.2300 -1.5995 7 6 1.7998 3.0019 -2.8885 8 7 1.2252 1.8004 -2.2552 9 6 1.1445 0.6885 -3.2118 10 6 0.0197 0.9417 -4.1824 11 8 -0.6491 1.9490 -4.0863 12 7 -0.2437 0.0483 -5.1566 13 6 -1.2666 0.2788 -6.0398 14 1 -1.8615 1.1761 -5.9548 15 6 -1.5377 -0.6419 -7.0444 16 7 -0.8134 -1.7335 -7.1482 17 14 -2.9318 -0.3282 -8.2475 18 1 -2.6776 0.9381 -8.9805 19 1 -3.0132 -1.4518 -9.2149 20 1 -4.2128 -0.2210 -7.5038 21 6 2.1388 -1.1672 0.0005 22 8 3.3516 -1.1674 0.0010 23 6 1.3852 -2.4723 0.0005 24 1 0.5243 -2.4161 -0.6656 25 6 0.9411 -2.8409 1.4292 26 8 1.6134 -4.1066 1.6921 27 6 2.3385 -4.4567 0.6240 28 8 3.0007 -5.4744 0.5767 29 7 2.2695 -3.5804 -0.3917 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5139 35 1 2.0744 3.8107 -0.8427 36 1 3.6262 3.5633 -1.7644 37 1 2.4235 2.7802 -3.7545 38 1 1.0645 3.7817 -3.0874 39 1 2.0847 0.6098 -3.7577 40 1 0.9578 -0.2409 -2.6738 41 1 0.2910 -0.7575 -5.2331 42 1 -1.0025 -2.3761 -7.8498 43 1 1.2671 -2.0805 2.1389 44 1 -0.1408 -2.9667 1.4726 45 1 2.7255 -3.6637 -1.2438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233992255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:48 Heat of formation + Delta-G solvation = -112.609139 kcal Electronic energy + Delta-G solvation = -30832.346177 eV Core-core repulsion = 26465.127382 eV Total energy + Delta-G solvation = -4367.218795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.93319 -41.64642 -40.43924 -39.50419 -38.37915 -36.56249 -35.93497 -35.80132 -33.33131 -32.25464 -31.33152 -29.52612 -27.52839 -27.48106 -25.80839 -25.34742 -23.91295 -23.56636 -21.13373 -20.93033 -20.45368 -19.91198 -19.29878 -18.78286 -18.10684 -17.81662 -17.42589 -17.16425 -17.07491 -16.63082 -16.45234 -15.98432 -15.72228 -15.59884 -15.38073 -15.25025 -14.90438 -14.80173 -14.48130 -14.11417 -13.91618 -13.76244 -13.53707 -13.48901 -13.13525 -12.94983 -12.81314 -12.49072 -12.44472 -12.38381 -12.15014 -12.06817 -11.96764 -11.92491 -11.64013 -11.49560 -11.44573 -10.41202 -10.33309 -10.02274 -9.91159 -9.51115 -8.46930 -5.95610 1.24928 1.38884 1.39130 1.42188 1.52174 1.56010 1.90106 2.03712 2.27813 2.50994 2.83763 3.03456 3.18685 3.20604 3.33146 3.58507 3.66565 3.83220 3.94923 4.16546 4.19392 4.25680 4.30552 4.35022 4.39254 4.44059 4.46408 4.49323 4.65320 4.76820 4.87559 4.90643 5.01088 5.15383 5.24721 5.33984 5.40731 5.48139 5.59448 5.90844 6.03628 6.07283 6.29769 6.58836 6.83310 6.98803 7.12370 7.55083 8.10177 8.69924 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.003552 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.570779 B = 7882.037765 C =10044.455863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.590 5.590 3 C 0.138 3.862 4 C 0.008 3.992 5 H 0.066 0.934 6 C -0.114 4.114 7 C 0.000 4.000 8 N -0.440 5.440 9 C 0.030 3.970 10 C 0.445 3.555 11 O -0.612 6.612 12 N -0.574 5.574 13 C -0.331 4.331 14 H 0.080 0.920 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.989 3.011 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.269 1.269 21 C 0.500 3.500 22 O -0.565 6.565 23 C 0.072 3.928 24 H 0.156 0.844 25 C 0.056 3.944 26 O -0.335 6.335 27 C 0.650 3.350 28 O -0.570 6.570 29 N -0.705 5.705 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.393 0.607 42 H 0.277 0.723 43 H 0.125 0.875 44 H 0.164 0.836 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 4.185 17.265 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.321 5.321 3 C 0.015 3.985 4 C -0.102 4.102 5 H 0.084 0.916 6 C -0.152 4.152 7 C -0.130 4.130 8 N -0.162 5.162 9 C -0.102 4.102 10 C 0.232 3.768 11 O -0.497 6.497 12 N -0.212 5.212 13 C -0.460 4.460 14 H 0.098 0.902 15 C -0.210 4.210 16 N -0.562 5.562 17 Si 0.813 3.187 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.194 1.194 21 C 0.286 3.714 22 O -0.444 6.444 23 C -0.038 4.038 24 H 0.174 0.826 25 C -0.018 4.018 26 O -0.244 6.244 27 C 0.403 3.597 28 O -0.458 6.458 29 N -0.377 5.377 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.227 0.773 42 H 0.086 0.914 43 H 0.143 0.857 44 H 0.182 0.818 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.750 4.071 17.860 18.523 hybrid contribution 0.705 -0.526 -2.274 2.438 sum 3.456 3.545 15.586 16.353 Atomic orbital electron populations 1.22281 0.76919 1.04898 1.03985 1.47795 1.08444 1.04977 1.70888 1.21560 0.98112 0.84647 0.94209 1.23908 0.91967 0.97944 0.96428 0.91573 1.23166 1.01277 0.93969 0.96784 1.23613 0.97315 0.94903 0.97134 1.68766 1.31538 1.01944 1.13998 1.22251 0.95825 0.97834 0.94242 1.20572 0.87831 0.84590 0.83764 1.90500 1.53930 1.29935 1.75356 1.41946 1.30862 1.21261 1.27086 1.19593 1.10556 1.06908 1.08951 0.90174 1.25974 1.00787 0.94786 0.99456 1.69662 1.40932 1.10698 1.34872 0.85043 0.78150 0.77853 0.77668 1.19911 1.19836 1.19407 1.20816 0.87749 0.85974 0.76844 1.90753 1.15166 1.87488 1.50997 1.22673 0.94702 0.85583 1.00799 0.82642 1.24721 1.01650 0.82714 0.92713 1.87257 1.59835 1.40775 1.36566 1.18590 0.78531 0.83080 0.79473 1.91038 1.45288 1.27691 1.81752 1.45780 1.51774 1.21571 1.18540 0.88770 0.90324 0.90158 0.87292 0.89604 0.86958 0.88827 0.92858 0.91248 0.92645 0.88213 0.77325 0.91395 0.85746 0.81812 0.71352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 9.66 127.77 1.23 1.91 16 2 N -0.59 -8.76 2.70 -846.77 -2.29 -11.05 16 3 C 0.14 2.12 5.56 86.38 0.48 2.60 16 4 C 0.01 0.16 3.37 42.18 0.14 0.30 16 5 H 0.07 1.52 7.77 -2.39 -0.02 1.50 16 6 C -0.11 -1.94 8.00 30.94 0.25 -1.70 16 7 C 0.00 -0.01 6.71 83.57 0.56 0.55 16 8 N -0.44 -11.68 4.60 -906.73 -4.17 -15.85 16 9 C 0.03 0.96 5.31 85.56 0.45 1.41 16 10 C 0.45 19.53 7.62 87.66 0.67 20.20 16 11 O -0.61 -31.18 15.34 -3.05 -0.05 -31.23 16 12 N -0.57 -27.80 5.29 -306.98 -1.62 -29.42 16 13 C -0.33 -17.88 9.68 84.04 0.81 -17.07 16 14 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 15 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 16 N -0.92 -48.17 13.05 21.66 0.28 -47.89 16 17 Si 0.99 41.40 29.55 68.60 2.03 43.42 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 C 0.50 9.22 6.79 87.66 0.60 9.81 16 22 O -0.57 -15.25 16.16 -3.04 -0.05 -15.30 16 23 C 0.07 1.01 3.32 44.50 0.15 1.15 16 24 H 0.16 1.42 6.41 -2.39 -0.02 1.40 16 25 C 0.06 0.56 7.74 72.35 0.56 1.12 16 26 O -0.33 -7.11 11.09 -47.28 -0.52 -7.64 16 27 C 0.65 17.40 9.16 129.86 1.19 18.59 16 28 O -0.57 -20.45 18.04 19.67 0.35 -20.09 16 29 N -0.71 -14.66 5.67 -572.81 -3.25 -17.91 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 1.33 7.21 -2.39 -0.02 1.31 16 32 H 0.08 0.73 5.98 -2.39 -0.01 0.71 16 33 H 0.11 1.25 7.81 -2.39 -0.02 1.23 16 34 H 0.09 1.40 7.42 -2.39 -0.02 1.39 16 35 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.51 7.70 -2.38 -0.02 1.49 16 38 H 0.07 2.15 8.13 -2.38 -0.02 2.13 16 39 H 0.06 1.72 7.56 -2.39 -0.02 1.70 16 40 H 0.10 2.75 7.85 -2.39 -0.02 2.73 16 41 H 0.39 18.34 7.90 -92.71 -0.73 17.60 16 42 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 43 H 0.12 0.89 7.72 -2.39 -0.02 0.87 16 44 H 0.16 0.26 8.14 -2.39 -0.02 0.25 16 45 H 0.44 8.99 8.96 -92.71 -0.83 8.16 16 Total: -1.00 -79.91 377.48 -2.23 -82.14 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.51 Total: 31.99 kcal Atomic # 6 Polarization: 31.26 SS G_CDS: 7.56 Total: 38.82 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -11.04 Total: -122.12 kcal Atomic # 8 Polarization: -73.99 SS G_CDS: -0.27 Total: -74.26 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -79.91 -2.23 -82.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233992255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.472 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds