Wall clock time and date at job start Sat Apr 11 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99893 * 2 1 4 4 C 1.53003 * 109.46980 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46927 * 65.00467 * 4 3 2 6 6 C 1.46507 * 119.99523 * 267.22563 * 5 4 3 7 7 C 1.52993 * 109.47315 * 263.16263 * 6 5 4 8 8 O 1.42899 * 109.47540 * 64.99728 * 7 6 5 9 9 C 1.42894 * 114.00263 * 179.97438 * 8 7 6 10 10 C 1.34771 * 120.00362 * 87.23152 * 5 4 3 11 11 O 1.21362 * 120.00052 * 3.94004 * 10 5 4 12 12 C 1.49313 * 119.99795 * 183.65950 * 10 5 4 13 13 O 1.21405 * 120.00028 * 355.25339 * 12 10 5 14 14 N 1.34772 * 119.99681 * 175.24634 * 12 10 5 15 15 C 1.40294 * 119.99866 * 180.02562 * 14 12 10 16 16 C 1.40718 * 126.10091 * 359.69027 * 15 14 12 17 17 N 1.30884 * 108.37801 * 179.87665 * 16 15 14 18 18 N 1.40058 * 108.43364 * 0.38367 * 17 16 15 19 19 C 1.37296 * 126.05385 * 179.73594 * 18 17 16 20 20 H 1.08002 * 119.99972 * 183.47711 * 19 18 17 21 21 C 1.39002 * 119.99963 * 3.46842 * 19 18 17 22 22 N 1.31276 * 120.00070 * 357.11361 * 21 19 18 23 23 Si 1.86808 * 119.99870 * 177.11558 * 21 19 18 24 24 H 1.48503 * 109.47071 * 94.80384 * 23 21 19 25 25 H 1.48496 * 109.46972 * 214.80540 * 23 21 19 26 26 H 1.48499 * 109.47038 * 334.80140 * 23 21 19 27 27 C 1.35789 * 126.10001 * 179.97438 * 15 14 12 28 28 H 1.09004 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47084 * 299.99550 * 1 2 3 30 30 H 1.08991 * 109.47624 * 60.00038 * 1 2 3 31 31 H 1.09001 * 109.47129 * 59.99838 * 3 2 1 32 32 H 1.08995 * 109.47299 * 300.00196 * 3 2 1 33 33 H 1.08994 * 109.47453 * 304.99593 * 4 3 2 34 34 H 1.09004 * 109.46521 * 184.99789 * 4 3 2 35 35 H 1.09001 * 109.47137 * 23.16233 * 6 5 4 36 36 H 1.08997 * 109.46585 * 143.15595 * 6 5 4 37 37 H 1.09002 * 109.47236 * 185.00720 * 7 6 5 38 38 H 1.09003 * 109.46931 * 305.00080 * 7 6 5 39 39 H 1.09000 * 109.47646 * 300.01180 * 9 8 7 40 40 H 1.09005 * 109.46839 * 60.00668 * 9 8 7 41 41 H 1.09002 * 109.47563 * 180.02562 * 9 8 7 42 42 H 0.97006 * 120.00523 * 0.02562 * 14 12 10 43 43 H 1.08003 * 125.81088 * 0.02562 * 16 15 14 44 44 H 0.97001 * 119.99897 * 180.02562 * 22 21 19 45 45 H 1.07998 * 126.25411 * 359.93196 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1636 -0.8866 -1.3249 7 6 5.6414 -1.2207 -1.1123 8 8 6.0264 -0.8551 0.2144 9 6 7.3959 -1.1273 0.5180 10 6 4.2077 1.3289 -2.3382 11 8 4.1215 2.5369 -2.2594 12 6 4.5769 0.6898 -3.6362 13 8 4.7525 -0.5101 -3.6938 14 7 4.7152 1.4451 -4.7438 15 6 5.0617 0.8446 -5.9635 16 6 5.2997 -0.5261 -6.1747 17 7 5.5933 -0.7041 -7.4377 18 7 5.5634 0.5406 -8.0791 19 6 5.8215 0.7715 -9.4076 20 1 5.8256 1.7818 -9.7893 21 6 6.0777 -0.2950 -10.2614 22 7 6.1290 -1.5180 -9.7870 23 14 6.3491 0.0119 -12.0840 24 1 7.8048 0.1242 -12.3557 25 1 5.7854 -1.1179 -12.8655 26 1 5.6729 1.2734 -12.4796 27 6 5.2324 1.4831 -7.1497 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9784 2.1766 0.0889 35 1 3.5670 -1.3692 -0.5508 36 1 3.8470 -1.2457 -2.3042 37 1 5.7961 -2.2903 -1.2540 38 1 6.2459 -0.6678 -1.8314 39 1 7.5867 -2.1951 0.4104 40 1 8.0371 -0.5728 -0.1672 41 1 7.6086 -0.8220 1.5426 42 1 4.5753 2.4039 -4.6978 43 1 5.2466 -1.2999 -5.4231 44 1 6.3082 -2.2622 -10.3827 45 1 5.1253 2.5433 -7.3255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255417813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:59 Heat of formation + Delta-G solvation = -53.242927 kcal Electronic energy + Delta-G solvation = -30167.905801 eV Core-core repulsion = 25803.261318 eV Total energy + Delta-G solvation = -4364.644483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74394 -39.61121 -38.29191 -37.84821 -37.65887 -35.74948 -34.19198 -33.16978 -31.16338 -30.33336 -29.08590 -28.02699 -26.64289 -26.24407 -25.40737 -24.31802 -22.96301 -22.18867 -20.99710 -19.60066 -19.36940 -17.77835 -17.35349 -17.03409 -16.49100 -16.40003 -16.07555 -15.69614 -15.64696 -15.51302 -15.10077 -15.04427 -14.71626 -14.57536 -14.05963 -13.83393 -13.62497 -13.12830 -13.05010 -12.92362 -12.51067 -12.35689 -12.08451 -11.95825 -11.84101 -11.74413 -11.49879 -11.38034 -11.30805 -11.18504 -10.90691 -10.79862 -10.56089 -10.27385 -9.88642 -9.65764 -9.24161 -8.96309 -8.87834 -8.66072 -8.14271 -6.78955 -6.62059 -4.29130 1.67214 2.57422 2.91953 3.02887 3.07959 3.30963 3.59951 3.67309 3.70746 3.80689 3.88504 4.35819 4.54008 4.88212 4.92921 4.96572 4.99195 5.10723 5.16182 5.18821 5.19985 5.25991 5.31422 5.40057 5.42815 5.51233 5.52821 5.57552 5.76030 5.78161 6.09066 6.19516 6.34755 6.42285 6.75275 6.87453 6.90878 6.96862 7.09156 7.15423 7.27083 7.72735 7.83546 8.11310 8.17268 8.48531 8.68579 9.29787 9.58501 10.33804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.002559 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.137987 B =10937.290396 C =11690.896117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.570 5.570 6 C 0.105 3.895 7 C 0.050 3.950 8 O -0.395 6.395 9 C 0.033 3.967 10 C 0.511 3.489 11 O -0.534 6.534 12 C 0.485 3.515 13 O -0.519 6.519 14 N -0.583 5.583 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.935 3.065 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 2.942 18.048 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.034 4.034 4 C -0.002 4.002 5 N -0.303 5.303 6 C -0.017 4.017 7 C -0.027 4.027 8 O -0.314 6.314 9 C -0.063 4.063 10 C 0.294 3.706 11 O -0.411 6.411 12 C 0.266 3.734 13 O -0.398 6.398 14 N -0.225 5.225 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.229 4.229 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.243 0.757 43 H 0.195 0.805 44 H 0.086 0.914 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.747 1.552 17.202 17.912 hybrid contribution -0.139 1.403 -0.247 1.431 sum -4.886 2.955 16.955 17.891 Atomic orbital electron populations 1.22719 0.81195 1.02709 0.99794 1.87897 1.19555 1.27640 1.95400 1.23039 0.94445 0.85135 1.00793 1.21599 0.91651 1.00563 0.86385 1.47591 1.64338 1.08442 1.09900 1.22289 0.94334 0.78849 1.06222 1.23038 0.96700 0.99623 0.83384 1.87830 1.26652 1.85213 1.31705 1.22678 0.83144 0.99560 1.00956 1.20313 0.78072 0.86810 0.85395 1.90709 1.51573 1.13811 1.84999 1.19667 0.81872 0.87172 0.84652 1.90532 1.50608 1.13967 1.84645 1.42183 1.63300 1.10810 1.06181 1.17251 1.22248 0.93350 0.84609 1.24142 1.06319 0.94271 0.95429 1.78259 1.25369 1.01334 1.04203 1.44558 1.36279 1.03427 1.06265 1.19924 1.50029 0.95615 0.79851 0.86465 1.25658 0.95527 0.94596 1.01303 1.70205 1.34328 0.98801 1.36034 0.85799 0.79073 0.78971 0.80261 1.19602 1.20007 1.18702 1.21313 1.17125 0.95275 0.89179 0.89645 0.94301 0.94147 0.92305 0.92816 0.88487 0.88425 0.89459 0.85057 0.92126 0.92515 0.94224 0.94266 0.90068 0.75661 0.80511 0.91377 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.28 9.97 -35.23 -0.35 -4.63 16 3 C 0.04 0.45 6.27 37.16 0.23 0.68 16 4 C 0.12 1.34 5.77 -4.04 -0.02 1.32 16 5 N -0.57 -7.69 2.39 -174.25 -0.42 -8.11 16 6 C 0.11 1.36 5.17 -4.04 -0.02 1.34 16 7 C 0.05 0.64 5.69 37.15 0.21 0.86 16 8 O -0.39 -4.91 10.45 -35.23 -0.37 -5.28 16 9 C 0.03 0.33 11.01 101.05 1.11 1.44 16 10 C 0.51 8.09 7.66 -11.65 -0.09 8.00 16 11 O -0.53 -9.01 16.08 5.49 0.09 -8.92 16 12 C 0.48 8.66 7.59 -11.65 -0.09 8.57 16 13 O -0.52 -9.77 9.08 5.45 0.05 -9.72 16 14 N -0.58 -10.89 5.45 -10.45 -0.06 -10.95 16 15 C -0.07 -1.56 6.90 -83.92 -0.58 -2.14 16 16 C -0.03 -0.65 10.85 -17.02 -0.18 -0.84 16 17 N -0.26 -7.36 10.40 30.81 0.32 -7.04 16 18 N -0.14 -3.72 3.73 -11.40 -0.04 -3.77 16 19 C -0.32 -8.35 10.25 -14.82 -0.15 -8.51 16 20 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16 22 N -0.77 -20.95 11.82 55.50 0.66 -20.29 16 23 Si 0.94 18.56 29.55 -169.99 -5.02 13.54 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.00 7.86 -51.93 -0.41 0.60 16 34 H 0.10 1.08 7.45 -51.93 -0.39 0.69 16 35 H 0.09 1.04 7.53 -51.93 -0.39 0.65 16 36 H 0.13 1.91 5.38 -51.93 -0.28 1.63 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.85 7.17 -51.93 -0.37 0.48 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.41 6.69 8.30 -40.82 -0.34 6.35 16 43 H 0.18 4.26 5.92 -52.48 -0.31 3.95 16 44 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.15 2.90 8.06 -52.49 -0.42 2.47 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -32.05 382.48 -4.39 -36.45 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.26 Total: 11.76 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 1.25 Total: 11.20 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.46 Total: -50.16 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.58 Total: -28.55 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.05 -4.39 -36.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255417813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.794 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds