Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99893 * 2 1 4 4 C 1.53003 * 109.46980 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46927 * 65.00467 * 4 3 2 6 6 C 1.46507 * 119.99523 * 267.22563 * 5 4 3 7 7 C 1.52993 * 109.47315 * 263.16263 * 6 5 4 8 8 O 1.42899 * 109.47540 * 64.99728 * 7 6 5 9 9 C 1.42894 * 114.00263 * 179.97438 * 8 7 6 10 10 C 1.34771 * 120.00362 * 87.23152 * 5 4 3 11 11 O 1.21362 * 120.00052 * 3.94004 * 10 5 4 12 12 C 1.49313 * 119.99795 * 183.65950 * 10 5 4 13 13 O 1.21405 * 120.00028 * 355.25339 * 12 10 5 14 14 N 1.34772 * 119.99681 * 175.24634 * 12 10 5 15 15 C 1.40294 * 119.99866 * 180.02562 * 14 12 10 16 16 C 1.40718 * 126.10091 * 359.69027 * 15 14 12 17 17 N 1.30884 * 108.37801 * 179.87665 * 16 15 14 18 18 N 1.40058 * 108.43364 * 0.38367 * 17 16 15 19 19 C 1.37296 * 126.05385 * 179.73594 * 18 17 16 20 20 H 1.08002 * 119.99972 * 183.47711 * 19 18 17 21 21 C 1.39002 * 119.99963 * 3.46842 * 19 18 17 22 22 N 1.31276 * 120.00070 * 357.11361 * 21 19 18 23 23 Si 1.86808 * 119.99870 * 177.11558 * 21 19 18 24 24 H 1.48503 * 109.47071 * 94.80384 * 23 21 19 25 25 H 1.48496 * 109.46972 * 214.80540 * 23 21 19 26 26 H 1.48499 * 109.47038 * 334.80140 * 23 21 19 27 27 C 1.35789 * 126.10001 * 179.97438 * 15 14 12 28 28 H 1.09004 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47084 * 299.99550 * 1 2 3 30 30 H 1.08991 * 109.47624 * 60.00038 * 1 2 3 31 31 H 1.09001 * 109.47129 * 59.99838 * 3 2 1 32 32 H 1.08995 * 109.47299 * 300.00196 * 3 2 1 33 33 H 1.08994 * 109.47453 * 304.99593 * 4 3 2 34 34 H 1.09004 * 109.46521 * 184.99789 * 4 3 2 35 35 H 1.09001 * 109.47137 * 23.16233 * 6 5 4 36 36 H 1.08997 * 109.46585 * 143.15595 * 6 5 4 37 37 H 1.09002 * 109.47236 * 185.00720 * 7 6 5 38 38 H 1.09003 * 109.46931 * 305.00080 * 7 6 5 39 39 H 1.09000 * 109.47646 * 300.01180 * 9 8 7 40 40 H 1.09005 * 109.46839 * 60.00668 * 9 8 7 41 41 H 1.09002 * 109.47563 * 180.02562 * 9 8 7 42 42 H 0.97006 * 120.00523 * 0.02562 * 14 12 10 43 43 H 1.08003 * 125.81088 * 0.02562 * 16 15 14 44 44 H 0.97001 * 119.99897 * 180.02562 * 22 21 19 45 45 H 1.07998 * 126.25411 * 359.93196 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1636 -0.8866 -1.3249 7 6 5.6414 -1.2207 -1.1123 8 8 6.0264 -0.8551 0.2144 9 6 7.3959 -1.1273 0.5180 10 6 4.2077 1.3289 -2.3382 11 8 4.1215 2.5369 -2.2594 12 6 4.5769 0.6898 -3.6362 13 8 4.7525 -0.5101 -3.6938 14 7 4.7152 1.4451 -4.7438 15 6 5.0617 0.8446 -5.9635 16 6 5.2997 -0.5261 -6.1747 17 7 5.5933 -0.7041 -7.4377 18 7 5.5634 0.5406 -8.0791 19 6 5.8215 0.7715 -9.4076 20 1 5.8256 1.7818 -9.7893 21 6 6.0777 -0.2950 -10.2614 22 7 6.1290 -1.5180 -9.7870 23 14 6.3491 0.0119 -12.0840 24 1 7.8048 0.1242 -12.3557 25 1 5.7854 -1.1179 -12.8655 26 1 5.6729 1.2734 -12.4796 27 6 5.2324 1.4831 -7.1497 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9784 2.1766 0.0889 35 1 3.5670 -1.3692 -0.5508 36 1 3.8470 -1.2457 -2.3042 37 1 5.7961 -2.2903 -1.2540 38 1 6.2459 -0.6678 -1.8314 39 1 7.5867 -2.1951 0.4104 40 1 8.0371 -0.5728 -0.1672 41 1 7.6086 -0.8220 1.5426 42 1 4.5753 2.4039 -4.6978 43 1 5.2466 -1.2999 -5.4231 44 1 6.3082 -2.2622 -10.3827 45 1 5.1253 2.5433 -7.3255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255417813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = -76.736778 kcal Electronic energy + Delta-G solvation = -30168.924571 eV Core-core repulsion = 25803.261318 eV Total energy + Delta-G solvation = -4365.663253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17358 -41.31816 -39.58679 -38.90912 -38.63842 -36.93145 -35.80689 -34.92487 -32.29452 -32.08140 -30.20929 -29.72479 -27.50371 -27.23670 -26.88603 -25.70397 -23.97880 -23.47188 -22.80129 -21.34774 -20.78791 -19.41495 -18.73154 -18.17164 -17.59495 -17.41958 -17.28547 -17.15822 -16.84242 -16.70357 -16.45715 -16.18068 -15.90912 -15.60164 -15.48442 -15.38313 -15.02302 -14.82300 -14.61806 -13.91673 -13.59471 -13.51063 -13.35433 -13.18118 -12.96178 -12.89323 -12.86572 -12.78581 -12.76449 -12.26785 -12.19527 -12.07669 -12.00991 -11.79431 -11.05505 -10.85315 -10.66024 -10.62670 -10.26669 -10.12506 -9.83968 -8.60131 -8.48413 -6.25486 0.29121 1.28091 1.30034 1.42103 1.58781 1.72463 2.04133 2.11234 2.44176 2.54458 2.83551 2.85795 2.90479 3.07969 3.43419 4.04234 4.08343 4.21627 4.24792 4.32468 4.40688 4.45563 4.52526 4.53749 4.55906 4.56080 4.58737 4.61807 4.71208 4.84598 4.86786 4.88897 4.94499 4.97703 4.99854 5.26318 5.34276 5.41429 5.90407 5.94547 6.19576 6.21927 6.25849 6.41578 6.67892 6.77036 7.08801 7.42153 7.64644 8.50819 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.002559 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.137987 B =10937.290396 C =11690.896117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.561 5.561 6 C 0.109 3.891 7 C 0.056 3.944 8 O -0.402 6.402 9 C 0.028 3.972 10 C 0.516 3.484 11 O -0.544 6.544 12 C 0.486 3.514 13 O -0.527 6.527 14 N -0.584 5.584 15 C -0.054 4.054 16 C -0.044 4.044 17 N -0.308 5.308 18 N -0.164 5.164 19 C -0.354 4.354 20 H 0.140 0.860 21 C -0.004 4.004 22 N -0.820 5.820 23 Si 1.018 2.982 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.245 1.245 27 C -0.076 4.076 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.103 0.897 42 H 0.421 0.579 43 H 0.180 0.820 44 H 0.278 0.722 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 4.296 19.211 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.292 5.292 6 C -0.013 4.013 7 C -0.021 4.021 8 O -0.322 6.322 9 C -0.069 4.069 10 C 0.298 3.702 11 O -0.422 6.422 12 C 0.268 3.732 13 O -0.406 6.406 14 N -0.228 5.228 15 C -0.161 4.161 16 C -0.220 4.220 17 N -0.139 5.139 18 N 0.068 4.932 19 C -0.485 4.485 20 H 0.157 0.843 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.837 3.163 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.168 1.168 27 C -0.227 4.227 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.121 0.879 42 H 0.258 0.742 43 H 0.196 0.804 44 H 0.087 0.913 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.302 2.923 18.425 19.394 hybrid contribution -0.014 0.971 -0.341 1.029 sum -5.316 3.894 18.084 19.247 Atomic orbital electron populations 1.22867 0.79864 1.03615 1.00486 1.87857 1.21072 1.28062 1.95553 1.23003 0.93522 0.85082 1.01406 1.21815 0.92532 1.00748 0.85187 1.47693 1.62960 1.08576 1.10017 1.22213 0.94722 0.78562 1.05800 1.22886 0.96051 0.99793 0.83384 1.87802 1.28103 1.85394 1.30892 1.22865 0.81728 1.00251 1.02021 1.19830 0.78637 0.86667 0.85059 1.90708 1.52550 1.13978 1.85014 1.20204 0.80648 0.87073 0.85272 1.90543 1.50280 1.14668 1.85059 1.42118 1.64043 1.11484 1.05165 1.17274 1.20383 0.92431 0.85965 1.24278 1.07054 0.95701 0.94946 1.78155 1.27011 1.03229 1.05521 1.44821 1.37709 1.03543 1.07145 1.20624 1.50777 0.97041 0.80020 0.84286 1.26845 0.94386 0.93928 1.06437 1.70369 1.36278 1.00070 1.38046 0.84593 0.79106 0.79303 0.73317 1.19021 1.20074 1.16818 1.21987 1.15478 0.96590 0.88668 0.88745 0.92498 0.94532 0.89520 0.94313 0.87257 0.88109 0.87884 0.86761 0.91191 0.94923 0.93243 0.94882 0.87912 0.74183 0.80381 0.91268 0.79790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.20 9.97 -148.98 -1.48 -9.69 16 3 C 0.05 0.86 6.27 71.98 0.45 1.32 16 4 C 0.12 2.39 5.77 86.38 0.50 2.89 16 5 N -0.56 -14.47 2.39 -823.57 -1.97 -16.44 16 6 C 0.11 2.73 5.17 86.38 0.45 3.17 16 7 C 0.06 1.42 5.69 71.98 0.41 1.83 16 8 O -0.40 -9.37 10.45 -148.98 -1.56 -10.93 16 9 C 0.03 0.50 11.01 113.37 1.25 1.75 16 10 C 0.52 15.89 7.66 87.23 0.67 16.56 16 11 O -0.54 -17.68 16.08 -3.28 -0.05 -17.74 16 12 C 0.49 17.26 7.59 87.23 0.66 17.92 16 13 O -0.53 -20.10 9.08 -3.42 -0.03 -20.13 16 14 N -0.58 -21.54 5.45 -305.33 -1.66 -23.20 16 15 C -0.05 -2.47 6.90 37.82 0.26 -2.21 16 16 C -0.04 -2.30 10.85 85.44 0.93 -1.37 16 17 N -0.31 -17.98 10.40 -56.43 -0.59 -18.57 16 18 N -0.16 -8.97 3.73 -189.98 -0.71 -9.68 16 19 C -0.35 -18.48 10.25 84.02 0.86 -17.61 16 20 H 0.14 6.33 7.83 -2.91 -0.02 6.31 16 21 C 0.00 -0.19 5.50 84.96 0.47 0.27 16 22 N -0.82 -46.29 11.82 21.66 0.26 -46.03 16 23 Si 1.02 37.99 29.55 68.60 2.03 40.02 16 24 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 25 H -0.28 -10.18 7.11 99.48 0.71 -9.48 16 26 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 27 C -0.08 -3.53 11.50 83.41 0.96 -2.57 16 28 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.98 7.86 -2.39 -0.02 1.96 16 34 H 0.10 2.01 7.45 -2.39 -0.02 1.99 16 35 H 0.10 2.29 7.53 -2.39 -0.02 2.27 16 36 H 0.11 3.31 5.38 -2.44 -0.01 3.30 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.03 0.98 7.17 -2.39 -0.02 0.96 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.42 13.32 8.30 -92.70 -0.77 12.55 16 43 H 0.18 8.94 5.92 -2.91 -0.02 8.92 16 44 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.19 6.88 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -71.01 382.48 3.59 -67.41 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 0.26 Total: 41.37 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 9.11 Total: 23.60 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -4.67 Total: -113.92 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -3.13 Total: -58.49 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -71.01 3.59 -67.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255417813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.323 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds