Wall clock time and date at job start Sat Apr 11 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28775 * 125.44576 * 2 1 4 4 N 1.28996 * 108.72655 * 179.97438 * 3 2 1 5 5 C 1.33318 * 107.35528 * 359.97438 * 4 3 2 6 6 C 1.50693 * 126.55431 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47424 * 89.97564 * 6 5 4 8 8 C 1.46902 * 111.00005 * 180.02562 * 7 6 5 9 9 C 1.53785 * 113.60796 * 254.13377 * 8 7 6 10 10 C 1.53957 * 87.01651 * 220.04868 * 9 8 7 11 11 C 1.52997 * 113.53833 * 270.81172 * 10 9 8 12 12 N 1.46502 * 109.47654 * 272.49805 * 11 10 9 13 13 C 1.34777 * 120.00457 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99591 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99918 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.47091 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00046 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00242 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00002 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99842 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46909 * 90.00079 * 21 19 17 23 23 H 1.48496 * 109.47118 * 210.00121 * 21 19 17 24 24 H 1.48500 * 109.47123 * 330.00350 * 21 19 17 25 25 C 1.53774 * 87.11303 * 25.36406 * 10 9 8 26 26 N 1.28880 * 125.44920 * 179.68945 * 2 1 3 27 27 H 1.09001 * 109.47060 * 90.02923 * 1 2 3 28 28 H 1.09004 * 109.47073 * 210.02412 * 1 2 3 29 29 H 1.09000 * 109.47212 * 330.02494 * 1 2 3 30 30 H 1.09000 * 109.47599 * 209.98169 * 6 5 4 31 31 H 1.09012 * 109.47000 * 329.97433 * 6 5 4 32 32 H 1.00900 * 111.00062 * 303.95843 * 7 6 5 33 33 H 1.08994 * 112.85294 * 25.33089 * 8 7 6 34 34 H 1.08996 * 113.62063 * 334.57014 * 9 8 7 35 35 H 1.09002 * 113.61408 * 105.47365 * 9 8 7 36 36 H 1.09006 * 113.73932 * 139.94970 * 10 9 8 37 37 H 1.09004 * 109.47442 * 32.49840 * 11 10 9 38 38 H 1.09000 * 109.47511 * 152.49489 * 11 10 9 39 39 H 0.97004 * 119.99479 * 0.02562 * 12 11 10 40 40 H 1.08995 * 109.47391 * 300.00124 * 15 13 12 41 41 H 1.08996 * 109.47074 * 60.00645 * 15 13 12 42 42 H 0.97003 * 119.99549 * 179.97438 * 20 19 17 43 43 H 1.08991 * 113.61817 * 220.08757 * 25 10 9 44 44 H 1.09003 * 113.61130 * 89.18362 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 0.0005 5 6 3.4621 -0.6551 0.0015 6 6 4.6825 -1.5391 0.0029 7 7 5.0785 -1.8250 1.3883 8 6 6.2681 -2.6859 1.4288 9 6 5.9636 -4.1386 1.8315 10 6 7.2590 -4.0949 2.6623 11 6 8.5026 -4.5183 1.8780 12 7 8.6627 -5.9720 1.9638 13 6 9.6972 -6.5738 1.3441 14 8 10.4958 -5.9118 0.7157 15 6 9.8622 -8.0691 1.4329 16 16 11.3333 -8.5700 0.5048 17 6 11.2844 -10.3111 0.7704 18 1 10.4932 -10.7449 1.3639 19 6 12.2634 -11.1252 0.2176 20 7 12.2272 -12.4259 0.4164 21 14 13.6323 -10.3748 -0.8084 22 1 14.7743 -10.0216 0.0726 23 1 14.0798 -11.3555 -1.8297 24 1 13.1309 -9.1509 -1.4835 25 6 7.0674 -2.5710 2.7375 26 7 2.2125 -1.0499 0.0057 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.4550 -2.4735 -0.5101 31 1 5.4991 -1.0320 -0.5112 32 1 5.2325 -0.9714 1.9038 33 1 6.8829 -2.6009 0.5328 34 1 5.0617 -4.2448 2.4342 35 1 6.0019 -4.8399 0.9979 36 1 7.1778 -4.5935 3.6283 37 1 8.3905 -4.2262 0.8338 38 1 9.3815 -4.0304 2.2993 39 1 8.0238 -6.5015 2.4662 40 1 9.9750 -8.3608 2.4770 41 1 8.9832 -8.5572 1.0121 42 1 12.9111 -12.9948 0.0298 43 1 7.9953 -2.0086 2.6344 44 1 6.4677 -2.2479 3.5885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264210382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:05 Heat of formation + Delta-G solvation = 114.709684 kcal Electronic energy + Delta-G solvation = -25239.502498 eV Core-core repulsion = 21357.186609 eV Total energy + Delta-G solvation = -3882.315889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.76409 -40.13797 -38.86092 -36.28214 -35.10906 -34.05833 -33.03320 -32.42870 -30.03549 -29.32767 -27.41777 -26.21243 -25.77735 -25.49437 -23.53077 -22.88186 -22.43921 -20.45204 -19.23128 -17.98801 -17.93529 -17.75816 -16.91235 -16.35955 -16.29673 -15.52730 -15.32030 -15.22267 -14.93523 -14.55810 -14.45189 -14.11800 -13.83513 -13.77403 -13.66417 -13.37339 -13.08588 -12.79296 -12.72928 -12.63711 -12.19319 -12.16422 -11.76732 -11.40917 -11.38704 -11.27713 -11.20800 -10.99891 -10.81013 -10.71444 -10.57929 -10.46750 -9.84727 -9.50469 -9.02498 -8.98769 -8.89721 -8.48861 -6.90647 -6.28051 -3.99634 0.77368 1.47227 1.67276 2.78011 2.99867 3.31359 3.31622 3.35093 3.51502 3.66123 3.70295 3.91428 4.14477 4.26059 4.30361 4.33892 4.37782 4.45117 4.48284 4.56964 4.76569 4.83132 4.96713 5.07359 5.11123 5.19702 5.26422 5.31460 5.34515 5.43072 5.45496 5.57957 5.66111 5.73231 5.76969 5.79558 5.88449 6.00405 6.03656 6.52803 6.56408 6.80520 7.64025 7.91540 7.95035 8.42596 8.51418 9.18265 10.81180 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.001489 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.706925 B =18804.541330 C =19044.754368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.142 5.142 3 N -0.065 5.065 4 N -0.282 5.282 5 C 0.171 3.829 6 C 0.155 3.845 7 N -0.672 5.672 8 C 0.058 3.942 9 C -0.120 4.120 10 C -0.124 4.124 11 C 0.139 3.861 12 N -0.735 5.735 13 C 0.530 3.470 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.143 6.143 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.130 4.130 26 N -0.290 5.290 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.346 0.654 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.073 0.927 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.869 25.577 3.395 35.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.054 5.054 3 N -0.058 5.058 4 N -0.154 5.154 5 C -0.112 4.112 6 C 0.024 3.976 7 N -0.304 5.304 8 C -0.052 4.052 9 C -0.159 4.159 10 C -0.143 4.143 11 C 0.014 3.986 12 N -0.389 5.389 13 C 0.316 3.684 14 O -0.396 6.396 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.168 4.168 26 N -0.141 5.141 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.309 26.557 2.363 36.080 hybrid contribution 0.108 -0.798 0.311 0.863 sum -24.201 25.759 2.675 35.446 Atomic orbital electron populations 1.22457 0.69037 1.06966 1.06106 1.50094 1.10831 1.00967 1.43557 1.78971 0.96498 1.14386 1.15957 1.75849 1.10069 1.11282 1.18180 1.25488 0.93279 0.90279 1.02131 1.20169 0.88900 0.96742 0.91836 1.60615 1.36509 1.21668 1.11639 1.23167 0.89669 0.94378 0.97969 1.23153 0.97275 0.95553 0.99878 1.22460 0.94918 0.96980 0.99985 1.21092 0.96421 0.80993 1.00046 1.45935 1.29665 1.07748 1.55577 1.20272 0.80248 0.89759 0.78138 1.90697 1.42358 1.66024 1.40511 1.23277 1.04911 0.93707 1.05580 1.84784 1.31126 1.08444 1.67272 1.22324 1.16564 0.89057 1.38973 0.89391 1.24710 0.97218 0.94176 0.95163 1.69941 1.34778 1.03285 1.43716 0.86735 0.82903 0.80990 0.81226 1.19210 1.19953 1.15928 1.23170 1.00220 0.95795 0.97651 1.74747 1.03336 1.15012 1.21041 0.87969 0.86975 0.86930 0.87839 0.91440 0.83466 0.90138 0.88997 0.91112 0.89351 0.91512 0.91382 0.76592 0.88504 0.88457 0.91959 0.90801 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 11.63 59.85 0.70 0.83 16 2 N -0.14 -1.04 4.40 -16.69 -0.07 -1.11 16 3 N -0.06 -0.61 13.25 60.35 0.80 0.19 16 4 N -0.28 -2.96 12.50 32.44 0.41 -2.56 16 5 C 0.17 1.59 7.88 -156.62 -1.23 0.35 16 6 C 0.16 1.13 6.16 -4.98 -0.03 1.10 16 7 N -0.67 -4.72 6.54 -107.13 -0.70 -5.42 16 8 C 0.06 0.39 3.77 -66.90 -0.25 0.14 16 9 C -0.12 -0.87 7.42 -25.82 -0.19 -1.06 16 10 C -0.12 -0.90 3.95 -89.72 -0.35 -1.25 16 11 C 0.14 1.44 5.35 -4.04 -0.02 1.42 16 12 N -0.73 -8.99 5.56 -60.30 -0.33 -9.32 16 13 C 0.53 9.28 7.85 -10.99 -0.09 9.20 16 14 O -0.52 -11.19 15.86 5.56 0.09 -11.10 16 15 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.05 10.04 30.94 0.31 -14.73 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 21 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C -0.13 -0.81 7.26 -25.92 -0.19 -1.00 16 26 N -0.29 -2.64 12.13 32.46 0.39 -2.24 16 27 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.11 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.44 8.13 -51.92 -0.42 0.01 16 32 H 0.35 2.35 8.55 -39.29 -0.34 2.02 16 33 H 0.08 0.56 7.46 -51.93 -0.39 0.18 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.75 7.39 -51.93 -0.38 0.36 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 3.79 8.47 -40.82 -0.35 3.45 16 40 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -37.36 388.38 -7.25 -44.61 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.52 Total: -0.11 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.23 Total: -4.46 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 1.27 Total: -46.29 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.36 -7.25 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264210382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.322 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds