Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28776 * 125.45300 * 2 1 4 4 N 1.28993 * 108.73052 * 180.02562 * 3 2 1 5 5 C 1.33317 * 107.35182 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.54588 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46877 * 90.02963 * 6 5 4 8 8 C 1.46846 * 111.00326 * 66.04264 * 7 6 5 9 9 C 1.53039 * 109.52092 * 174.15988 * 8 7 6 10 10 C 1.53123 * 109.28001 * 59.18197 * 9 8 7 11 11 C 1.53117 * 109.15877 * 302.34181 * 10 9 8 12 12 H 1.09005 * 109.50615 * 297.71674 * 11 10 9 13 13 N 1.46499 * 109.50305 * 177.59751 * 11 10 9 14 14 C 1.34770 * 120.00109 * 84.99924 * 13 11 10 15 15 O 1.21283 * 120.00265 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00082 * 180.02562 * 14 13 11 17 17 S 1.80999 * 109.47135 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99799 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00435 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99947 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47056 * 119.99715 * 22 20 18 25 25 H 1.48495 * 109.47174 * 239.99609 * 22 20 18 26 26 C 1.46851 * 111.00164 * 301.83176 * 7 6 5 27 27 N 1.28891 * 125.44972 * 180.33378 * 2 1 3 28 28 H 1.09003 * 109.46854 * 89.98215 * 1 2 3 29 29 H 1.09005 * 109.47061 * 209.97709 * 1 2 3 30 30 H 1.08993 * 109.47077 * 329.98294 * 1 2 3 31 31 H 1.08994 * 109.46790 * 210.02353 * 6 5 4 32 32 H 1.08997 * 109.47305 * 330.02794 * 6 5 4 33 33 H 1.08994 * 109.45986 * 294.17377 * 8 7 6 34 34 H 1.08998 * 109.46224 * 54.14472 * 8 7 6 35 35 H 1.09002 * 109.50083 * 179.12272 * 9 8 7 36 36 H 1.09002 * 109.50572 * 299.19641 * 9 8 7 37 37 H 1.08992 * 109.52278 * 62.24615 * 10 9 8 38 38 H 1.09003 * 109.51969 * 182.43656 * 10 9 8 39 39 H 0.97006 * 119.99665 * 265.00140 * 13 11 10 40 40 H 1.09007 * 109.47019 * 300.00246 * 16 14 13 41 41 H 1.09002 * 109.46978 * 59.99784 * 16 14 13 42 42 H 0.96996 * 120.00514 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.45909 * 305.85928 * 26 7 6 44 44 H 1.09003 * 109.46012 * 65.82405 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0490 0.0000 4 7 3.4473 0.6778 -0.0005 5 6 3.4620 -0.6553 -0.0003 6 6 4.6825 -1.5393 -0.0002 7 7 5.0786 -1.8269 1.3848 8 6 4.0606 -2.6367 2.0661 9 6 4.5700 -3.0382 3.4522 10 6 4.8728 -1.7761 4.2647 11 6 5.8995 -0.9270 3.5102 12 1 6.8293 -1.4866 3.4071 13 7 6.1520 0.3100 4.2532 14 6 7.0622 0.3253 5.2470 15 8 7.6726 -0.6849 5.5260 16 6 7.3215 1.5978 6.0118 17 16 8.5871 1.2979 7.2706 18 6 8.6881 2.9026 7.9912 19 1 8.0648 3.7021 7.6188 20 6 9.5696 3.1396 9.0369 21 7 10.3297 2.1654 9.4905 22 14 9.6773 4.8410 9.8003 23 1 8.7261 5.7523 9.1147 24 1 9.3328 4.7591 11.2425 25 1 11.0588 5.3643 9.6504 26 6 5.3517 -0.5867 2.1224 27 7 2.2126 -1.0500 -0.0061 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.4547 -2.4731 -0.5143 32 1 5.4989 -1.0316 -0.5137 33 1 3.1443 -2.0557 2.1701 34 1 3.8576 -3.5330 1.4800 35 1 3.8079 -3.6261 3.9637 36 1 5.4784 -3.6316 3.3483 37 1 3.9562 -1.2026 4.4019 38 1 5.2768 -2.0573 5.2373 39 1 5.6640 1.1181 4.0299 40 1 7.6682 2.3701 5.3252 41 1 6.4004 1.9265 6.4932 42 1 10.9455 2.3308 10.2214 43 1 6.0864 0.0058 1.5771 44 1 4.4292 -0.0153 2.2261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265203085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = 98.628789 kcal Electronic energy + Delta-G solvation = -26899.820056 eV Core-core repulsion = 23016.806847 eV Total energy + Delta-G solvation = -3883.013209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.75687 -39.98493 -38.53835 -35.81481 -34.87681 -33.60673 -32.67646 -32.40007 -30.48680 -29.41190 -28.30068 -27.32955 -25.45593 -24.10030 -23.63591 -22.79743 -22.23408 -20.26672 -19.96867 -17.99831 -17.95915 -17.77021 -16.62471 -16.34939 -15.86905 -15.29444 -15.04037 -14.89635 -14.77849 -14.60624 -14.36232 -14.05072 -13.91473 -13.72602 -13.63984 -13.25281 -13.08293 -12.87528 -12.57344 -12.43669 -12.05841 -11.87938 -11.58999 -11.35721 -11.30210 -11.08055 -11.05327 -10.99282 -10.97001 -10.75533 -10.68828 -10.49457 -9.77384 -9.33196 -9.04983 -8.95478 -8.82468 -8.19528 -6.46361 -6.19003 -3.88969 0.79703 1.50355 1.71843 2.98615 3.14649 3.23649 3.27713 3.32860 3.41282 3.55174 3.78025 3.91861 4.23153 4.27195 4.31022 4.56531 4.58579 4.69839 4.79182 4.85983 5.03268 5.10293 5.14073 5.16187 5.20959 5.33034 5.34595 5.36579 5.44990 5.46893 5.63979 5.68676 5.69166 5.76819 5.93383 5.94186 6.16224 6.18783 6.22494 6.49504 6.58473 6.77709 7.62880 7.76708 7.94939 8.38440 8.67349 9.26485 10.88483 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002153 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.267480 B =12999.016217 C =13912.537658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.143 5.143 3 N -0.063 5.063 4 N -0.273 5.273 5 C 0.132 3.868 6 C 0.151 3.849 7 N -0.512 5.512 8 C 0.053 3.947 9 C -0.114 4.114 10 C -0.133 4.133 11 C 0.152 3.848 12 H 0.099 0.901 13 N -0.735 5.735 14 C 0.535 3.465 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.050 3.950 27 N -0.302 5.302 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.396 0.604 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.267 0.733 43 H 0.089 0.911 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 -8.143 -22.384 32.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.055 5.055 3 N -0.056 5.056 4 N -0.145 5.145 5 C -0.152 4.152 6 C 0.019 3.981 7 N -0.235 5.235 8 C -0.075 4.075 9 C -0.152 4.152 10 C -0.172 4.172 11 C 0.046 3.954 12 H 0.117 0.883 13 N -0.389 5.389 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.078 4.078 27 N -0.153 5.153 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.900 -9.611 -21.792 31.687 hybrid contribution -1.691 2.830 0.076 3.297 sum -22.591 -6.781 -21.716 32.061 Atomic orbital electron populations 1.22442 0.69175 1.06932 1.06023 1.50107 1.10767 1.01012 1.43639 1.79013 0.96669 1.14263 1.15682 1.75918 1.09820 1.11201 1.17592 1.26953 0.94350 0.91464 1.02458 1.20877 0.88621 0.96781 0.91779 1.62211 1.42243 1.18016 1.01069 1.22223 0.92250 0.97324 0.95702 1.21550 1.02145 0.97662 0.93848 1.22012 0.98780 0.96251 1.00175 1.20796 0.99647 0.85967 0.88961 0.88279 1.46004 1.43227 1.12799 1.36847 1.20275 0.78120 0.90306 0.79196 1.90699 1.47884 1.34843 1.65467 1.23538 1.06163 0.97562 1.03143 1.85383 1.45451 1.16573 1.35908 1.22914 1.27416 0.96299 1.21609 0.90908 1.24996 0.94684 0.98076 0.95895 1.70026 1.22779 1.31643 1.25849 0.86117 0.78101 0.82426 0.78855 1.19635 1.20599 1.20564 1.22343 1.00419 0.90674 0.94377 1.74723 1.03344 1.15505 1.21765 0.88013 0.87131 0.86918 0.87419 0.86969 0.94866 0.90044 0.91111 0.90337 0.92611 0.90516 0.77019 0.89189 0.89350 0.92264 0.89265 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.20 11.63 59.85 0.70 0.90 16 2 N -0.14 -1.12 4.40 -16.69 -0.07 -1.19 16 3 N -0.06 -0.65 13.25 60.35 0.80 0.15 16 4 N -0.27 -3.09 11.89 32.45 0.39 -2.70 16 5 C 0.13 1.26 5.69 -156.63 -0.89 0.37 16 6 C 0.15 1.15 6.00 -4.97 -0.03 1.12 16 7 N -0.51 -4.67 4.86 -236.11 -1.15 -5.82 16 8 C 0.05 0.46 5.13 -3.83 -0.02 0.44 16 9 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 10 C -0.13 -1.61 5.58 -26.61 -0.15 -1.76 16 11 C 0.15 1.95 2.61 -67.85 -0.18 1.77 16 12 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 13 N -0.74 -10.47 5.08 -53.73 -0.27 -10.74 16 14 C 0.53 10.22 7.81 -10.99 -0.09 10.14 16 15 O -0.52 -11.81 15.53 5.56 0.09 -11.72 16 16 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 22 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.05 0.53 4.41 -3.83 -0.02 0.51 16 27 N -0.30 -2.69 11.63 32.47 0.38 -2.31 16 28 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.11 0.62 8.06 -51.93 -0.42 0.20 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.32 7.08 -51.93 -0.37 -0.05 16 34 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.40 4.70 8.60 -40.82 -0.35 4.35 16 40 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 44 H 0.04 0.43 6.87 -51.93 -0.36 0.07 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -37.37 379.34 -7.54 -44.91 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.50 Total: 0.44 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.42 Total: -3.84 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.80 Total: -48.30 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.37 -7.54 -44.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.541 kcal (2) G-P(sol) polarization free energy of solvation -37.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds