Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28776 * 125.45300 * 2 1 4 4 N 1.28993 * 108.73052 * 180.02562 * 3 2 1 5 5 C 1.33317 * 107.35182 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.54588 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46877 * 90.02963 * 6 5 4 8 8 C 1.46846 * 111.00326 * 66.04264 * 7 6 5 9 9 C 1.53039 * 109.52092 * 174.15988 * 8 7 6 10 10 C 1.53123 * 109.28001 * 59.18197 * 9 8 7 11 11 C 1.53117 * 109.15877 * 302.34181 * 10 9 8 12 12 H 1.09005 * 109.50615 * 297.71674 * 11 10 9 13 13 N 1.46499 * 109.50305 * 177.59751 * 11 10 9 14 14 C 1.34770 * 120.00109 * 84.99924 * 13 11 10 15 15 O 1.21283 * 120.00265 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00082 * 180.02562 * 14 13 11 17 17 S 1.80999 * 109.47135 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99799 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00435 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99947 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47056 * 119.99715 * 22 20 18 25 25 H 1.48495 * 109.47174 * 239.99609 * 22 20 18 26 26 C 1.46851 * 111.00164 * 301.83176 * 7 6 5 27 27 N 1.28891 * 125.44972 * 180.33378 * 2 1 3 28 28 H 1.09003 * 109.46854 * 89.98215 * 1 2 3 29 29 H 1.09005 * 109.47061 * 209.97709 * 1 2 3 30 30 H 1.08993 * 109.47077 * 329.98294 * 1 2 3 31 31 H 1.08994 * 109.46790 * 210.02353 * 6 5 4 32 32 H 1.08997 * 109.47305 * 330.02794 * 6 5 4 33 33 H 1.08994 * 109.45986 * 294.17377 * 8 7 6 34 34 H 1.08998 * 109.46224 * 54.14472 * 8 7 6 35 35 H 1.09002 * 109.50083 * 179.12272 * 9 8 7 36 36 H 1.09002 * 109.50572 * 299.19641 * 9 8 7 37 37 H 1.08992 * 109.52278 * 62.24615 * 10 9 8 38 38 H 1.09003 * 109.51969 * 182.43656 * 10 9 8 39 39 H 0.97006 * 119.99665 * 265.00140 * 13 11 10 40 40 H 1.09007 * 109.47019 * 300.00246 * 16 14 13 41 41 H 1.09002 * 109.46978 * 59.99784 * 16 14 13 42 42 H 0.96996 * 120.00514 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.45909 * 305.85928 * 26 7 6 44 44 H 1.09003 * 109.46012 * 65.82405 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0490 0.0000 4 7 3.4473 0.6778 -0.0005 5 6 3.4620 -0.6553 -0.0003 6 6 4.6825 -1.5393 -0.0002 7 7 5.0786 -1.8269 1.3848 8 6 4.0606 -2.6367 2.0661 9 6 4.5700 -3.0382 3.4522 10 6 4.8728 -1.7761 4.2647 11 6 5.8995 -0.9270 3.5102 12 1 6.8293 -1.4866 3.4071 13 7 6.1520 0.3100 4.2532 14 6 7.0622 0.3253 5.2470 15 8 7.6726 -0.6849 5.5260 16 6 7.3215 1.5978 6.0118 17 16 8.5871 1.2979 7.2706 18 6 8.6881 2.9026 7.9912 19 1 8.0648 3.7021 7.6188 20 6 9.5696 3.1396 9.0369 21 7 10.3297 2.1654 9.4905 22 14 9.6773 4.8410 9.8003 23 1 8.7261 5.7523 9.1147 24 1 9.3328 4.7591 11.2425 25 1 11.0588 5.3643 9.6504 26 6 5.3517 -0.5867 2.1224 27 7 2.2126 -1.0500 -0.0061 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.4547 -2.4731 -0.5143 32 1 5.4989 -1.0316 -0.5137 33 1 3.1443 -2.0557 2.1701 34 1 3.8576 -3.5330 1.4800 35 1 3.8079 -3.6261 3.9637 36 1 5.4784 -3.6316 3.3483 37 1 3.9562 -1.2026 4.4019 38 1 5.2768 -2.0573 5.2373 39 1 5.6640 1.1181 4.0299 40 1 7.6682 2.3701 5.3252 41 1 6.4004 1.9265 6.4932 42 1 10.9455 2.3308 10.2214 43 1 6.0864 0.0058 1.5771 44 1 4.4292 -0.0153 2.2261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265203085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = 68.679519 kcal Electronic energy + Delta-G solvation = -26901.118754 eV Core-core repulsion = 23016.806847 eV Total energy + Delta-G solvation = -3884.311907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.39231 -41.13840 -39.72175 -36.59290 -35.76737 -34.59485 -34.51806 -33.44038 -31.78779 -29.92605 -29.58340 -28.01542 -27.65317 -24.88100 -24.32796 -23.65125 -22.97977 -21.65056 -20.93900 -19.81094 -18.58980 -18.46745 -17.87177 -17.64304 -16.88673 -16.75312 -16.43056 -16.08880 -16.02224 -15.72155 -15.31109 -15.02699 -14.77903 -14.69276 -14.54890 -14.27813 -14.13550 -13.83747 -13.65630 -13.51177 -13.16432 -13.11529 -12.91715 -12.64483 -12.57361 -12.47869 -12.05409 -12.01177 -11.93994 -11.85539 -11.72586 -11.62908 -11.16159 -11.15097 -10.91769 -10.28126 -10.13680 -9.68755 -8.66845 -8.35064 -6.12972 0.16600 1.02469 1.11707 1.25853 1.41104 1.45828 1.57542 1.59660 2.14786 2.26976 2.79851 2.97239 2.98942 3.25545 3.31601 3.64464 3.75198 3.92946 3.97295 4.00649 4.15268 4.20668 4.23287 4.28484 4.38367 4.46937 4.49045 4.51149 4.53173 4.55861 4.64360 4.76241 4.81333 4.85188 4.89774 5.02465 5.16732 5.19212 5.28206 5.41762 5.42261 5.82173 5.90266 6.19840 6.45874 7.06220 7.21677 7.29383 8.74437 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002153 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.267480 B =12999.016217 C =13912.537658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.131 5.131 3 N -0.085 5.085 4 N -0.304 5.304 5 C 0.127 3.873 6 C 0.152 3.848 7 N -0.516 5.516 8 C 0.059 3.941 9 C -0.109 4.109 10 C -0.129 4.129 11 C 0.152 3.848 12 H 0.076 0.924 13 N -0.712 5.712 14 C 0.539 3.461 15 O -0.559 6.559 16 C -0.130 4.130 17 S -0.147 6.147 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.065 3.935 27 N -0.305 5.305 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.027 0.973 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.412 0.588 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.089 0.911 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.419 -7.337 -23.876 34.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.045 5.045 3 N -0.079 5.079 4 N -0.175 5.175 5 C -0.158 4.158 6 C 0.021 3.979 7 N -0.239 5.239 8 C -0.068 4.068 9 C -0.147 4.147 10 C -0.168 4.168 11 C 0.047 3.953 12 H 0.094 0.906 13 N -0.365 5.365 14 C 0.324 3.676 15 O -0.437 6.437 16 C -0.281 4.281 17 S 0.080 5.920 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.063 4.063 27 N -0.158 5.158 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.046 0.954 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.248 0.752 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -23.265 -8.785 -23.331 34.100 hybrid contribution -1.136 2.503 0.430 2.782 sum -24.401 -6.282 -22.902 34.050 Atomic orbital electron populations 1.22994 0.66356 1.08593 1.07997 1.50600 1.12217 1.00218 1.41479 1.78944 0.96853 1.15204 1.16873 1.75870 1.10558 1.12244 1.18858 1.27190 0.95020 0.91149 1.02428 1.21036 0.88400 0.97739 0.90758 1.62209 1.42766 1.17139 1.01743 1.22203 0.91568 0.97902 0.95169 1.21535 1.02477 0.96330 0.94381 1.21946 0.98315 0.97465 0.99074 1.20885 0.99068 0.84991 0.90353 0.90555 1.45771 1.41473 1.14205 1.35084 1.20008 0.78623 0.89065 0.79860 1.90689 1.49931 1.36018 1.67042 1.23376 1.04314 0.98955 1.01480 1.85549 1.49165 1.18023 1.39269 1.23230 1.27819 0.96302 1.22027 0.90042 1.26138 0.93983 1.02806 0.96296 1.70184 1.23639 1.34320 1.26569 0.84894 0.78516 0.76586 0.77874 1.18148 1.19849 1.19852 1.22118 0.99974 0.91419 0.92832 1.74703 1.03289 1.15869 1.21899 0.85823 0.85386 0.85423 0.85164 0.86248 0.95450 0.87919 0.89527 0.90910 0.92071 0.93414 0.75210 0.87290 0.87460 0.91964 0.89238 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.14 11.63 127.77 1.49 1.62 16 2 N -0.13 -1.79 4.40 -206.73 -0.91 -2.70 16 3 N -0.09 -1.67 13.25 37.02 0.49 -1.18 16 4 N -0.30 -6.54 11.89 -51.26 -0.61 -7.15 16 5 C 0.13 2.19 5.69 138.56 0.79 2.98 16 6 C 0.15 1.99 6.00 85.56 0.51 2.50 16 7 N -0.52 -8.49 4.86 -900.93 -4.38 -12.87 16 8 C 0.06 0.89 5.13 86.33 0.44 1.33 16 9 C -0.11 -1.95 6.09 30.65 0.19 -1.76 16 10 C -0.13 -3.08 5.58 30.67 0.17 -2.91 16 11 C 0.15 3.86 2.61 45.04 0.12 3.98 16 12 H 0.08 2.35 7.58 -2.38 -0.02 2.33 16 13 N -0.71 -19.89 5.08 -442.29 -2.25 -22.14 16 14 C 0.54 20.76 7.81 87.66 0.68 21.44 16 15 O -0.56 -26.56 15.53 -3.04 -0.05 -26.61 16 16 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 17 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 18 C -0.55 -31.72 9.50 67.96 0.65 -31.08 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 22 Si 1.00 44.27 29.55 68.60 2.03 46.29 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.07 1.31 4.41 86.32 0.38 1.69 16 27 N -0.30 -4.79 11.63 -51.20 -0.60 -5.38 16 28 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.13 -0.20 8.14 -2.38 -0.02 -0.22 16 30 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.13 1.12 8.06 -2.39 -0.02 1.10 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 0.46 7.08 -2.39 -0.02 0.45 16 34 H 0.10 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 9.13 8.60 -92.70 -0.80 8.33 16 40 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 41 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.09 1.80 8.12 -2.38 -0.02 1.78 16 44 H 0.03 0.73 6.87 -2.39 -0.02 0.71 16 Total: -1.00 -83.66 379.34 -0.59 -84.25 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.23 Total: 17.19 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.32 Total: -3.93 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -7.96 Total: -107.69 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -83.66 -0.59 -84.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.929 kcal (2) G-P(sol) polarization free energy of solvation -83.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds