Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34227 * 125.73948 * 2 1 4 4 C 1.38072 * 107.44106 * 180.12351 * 3 2 1 5 5 C 1.47379 * 126.42451 * 179.83582 * 4 3 2 6 6 O 1.21611 * 120.00102 * 139.54958 * 5 4 3 7 7 N 1.34780 * 119.99819 * 319.54445 * 5 4 3 8 8 C 1.46921 * 120.63334 * 354.33138 * 7 5 4 9 9 C 1.53161 * 108.76838 * 233.63225 * 8 7 5 10 10 C 1.53043 * 109.32654 * 305.35382 * 9 8 7 11 11 C 1.53040 * 109.52628 * 61.37541 * 10 9 8 12 12 H 1.08997 * 109.49595 * 58.59277 * 11 10 9 13 13 C 1.52998 * 109.49748 * 178.65980 * 11 10 9 14 14 C 1.53000 * 109.47162 * 184.99950 * 13 11 10 15 15 N 1.46498 * 109.47080 * 179.97438 * 14 13 11 16 16 C 1.36940 * 120.00116 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99481 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00298 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46860 * 90.00141 * 20 18 16 22 22 H 1.48493 * 109.47061 * 210.00268 * 20 18 16 23 23 H 1.48500 * 109.47032 * 330.00465 * 20 18 16 24 24 C 1.46931 * 120.62782 * 174.35511 * 7 5 4 25 25 C 1.41393 * 107.15111 * 359.57205 * 4 3 2 26 26 Cl 1.73598 * 126.00562 * 180.26598 * 25 4 3 27 27 N 1.30531 * 107.98842 * 0.26146 * 25 4 3 28 28 H 1.09002 * 109.46959 * 270.33465 * 1 2 3 29 29 H 1.08999 * 109.47428 * 30.33404 * 1 2 3 30 30 H 1.08999 * 109.47185 * 150.33966 * 1 2 3 31 31 H 1.08007 * 126.28233 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.58716 * 353.41869 * 8 7 5 33 33 H 1.09003 * 109.58317 * 113.69914 * 8 7 5 34 34 H 1.09006 * 109.47946 * 185.41013 * 9 8 7 35 35 H 1.08993 * 109.50628 * 65.32113 * 9 8 7 36 36 H 1.08998 * 109.46002 * 301.36158 * 10 9 8 37 37 H 1.09000 * 109.45631 * 181.39128 * 10 9 8 38 38 H 1.09004 * 109.46616 * 304.99961 * 13 11 10 39 39 H 1.08998 * 109.47291 * 64.99361 * 13 11 10 40 40 H 1.08999 * 109.46877 * 300.00076 * 14 13 11 41 41 H 1.09005 * 109.47200 * 59.99723 * 14 13 11 42 42 H 0.96996 * 120.00128 * 0.02562 * 15 14 13 43 43 H 0.96998 * 120.00133 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58321 * 6.58388 * 24 7 5 45 45 H 1.09002 * 109.58400 * 246.15930 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0895 0.0000 4 6 3.5599 0.6560 -0.0028 5 6 4.7631 1.5072 -0.0073 6 8 5.7242 1.2051 0.6739 7 7 4.7982 2.6203 -0.7664 8 6 3.6974 2.9332 -1.6877 9 6 4.2759 3.1602 -3.0876 10 6 5.3623 4.2359 -3.0184 11 6 6.4918 3.7639 -2.1000 12 1 6.9026 2.8285 -2.4798 13 6 7.5928 4.8254 -2.0576 14 6 8.7755 4.3012 -1.2406 15 7 9.8300 5.3174 -1.2006 16 6 10.9936 5.0703 -0.5221 17 1 11.1339 4.1262 -0.0169 18 6 11.9930 6.0329 -0.4846 19 7 11.8220 7.1833 -1.1008 20 14 13.5799 5.6962 0.4415 21 1 14.5641 5.0670 -0.4754 22 1 14.1318 6.9740 0.9588 23 1 13.3052 4.7797 1.5772 24 6 5.9385 3.5437 -0.6886 25 6 3.5317 -0.7576 0.0055 26 17 4.9153 -1.8060 0.0125 27 7 2.2823 -1.1358 0.0072 28 1 -0.3633 0.0060 1.0277 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3633 -0.8930 -0.5085 31 1 1.9157 2.1168 -0.0004 32 1 2.9945 2.1005 -1.7134 33 1 3.1844 3.8342 -1.3514 34 1 3.4827 3.4870 -3.7601 35 1 4.7076 2.2305 -3.4581 36 1 4.9354 5.1583 -2.6245 37 1 5.7583 4.4168 -4.0177 38 1 7.9224 5.0477 -3.0726 39 1 7.2051 5.7328 -1.5947 40 1 8.4458 4.0789 -0.2258 41 1 9.1632 3.3938 -1.7037 42 1 9.7040 6.1652 -1.6547 43 1 12.5202 7.8562 -1.0743 44 1 6.7143 3.1137 -0.0550 45 1 5.6098 4.4959 -0.2722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267896257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = 47.717228 kcal Electronic energy + Delta-G solvation = -27179.299555 eV Core-core repulsion = 23259.742197 eV Total energy + Delta-G solvation = -3919.557358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96626 -39.94213 -37.66884 -36.99746 -35.30701 -33.76556 -33.47818 -32.13668 -31.21596 -30.39595 -27.77067 -27.31332 -25.65199 -24.17310 -22.82524 -22.40863 -21.68356 -20.82592 -20.25067 -19.48763 -17.58555 -16.99772 -16.87315 -16.31276 -16.00297 -15.48162 -15.14793 -14.81785 -14.67440 -14.28283 -14.07398 -13.76502 -13.71527 -13.52124 -13.37156 -13.25276 -13.00108 -12.92182 -12.64355 -12.24000 -11.98501 -11.88841 -11.40888 -11.10621 -11.07064 -11.05134 -10.97904 -10.79042 -10.53615 -10.38624 -10.19271 -9.96694 -9.86489 -9.77609 -9.57544 -9.12037 -8.77604 -8.64097 -6.82499 -5.68506 -2.96273 1.01699 1.06169 1.64424 2.25586 2.79143 3.09428 3.50358 3.55207 3.57664 3.92915 4.11245 4.44022 4.51229 4.55987 4.68207 4.72958 4.77782 4.82124 4.84993 4.90035 5.00114 5.13127 5.24013 5.43620 5.48417 5.61365 5.64081 5.65611 5.73504 5.83571 5.93339 6.04259 6.08501 6.15891 6.26956 6.33317 6.40476 6.50647 6.57882 6.84023 6.97312 7.00273 7.33917 7.79950 8.16516 8.51215 9.62017 10.20984 10.55652 11.54723 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.002425 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.183101 B =11545.982874 C =12725.474850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.351 5.351 3 C 0.105 3.895 4 C -0.265 4.265 5 C 0.590 3.410 6 O -0.519 6.519 7 N -0.607 5.607 8 C 0.102 3.898 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.118 4.118 14 C 0.150 3.850 15 N -0.734 5.734 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.017 4.017 19 N -0.936 5.936 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.117 3.883 25 C 0.167 3.833 26 Cl 0.031 6.969 27 N -0.283 5.283 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.193 0.807 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.102 0.898 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.857 -12.264 -2.722 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.131 5.131 3 C -0.046 4.046 4 C -0.281 4.281 5 C 0.377 3.623 6 O -0.394 6.394 7 N -0.341 5.341 8 C -0.021 4.021 9 C -0.172 4.172 10 C -0.152 4.152 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.156 4.156 14 C 0.023 3.977 15 N -0.378 5.378 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.213 4.213 19 N -0.586 5.586 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.005 4.005 25 C -0.025 4.025 26 Cl 0.059 6.941 27 N -0.108 5.108 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.210 0.790 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -31.040 -13.610 -2.224 33.965 hybrid contribution 1.367 0.781 0.256 1.595 sum -29.672 -12.829 -1.967 32.387 Atomic orbital electron populations 1.22106 0.72531 1.05423 1.04366 1.48195 1.07178 1.03064 1.54662 1.23151 0.89424 0.94074 0.97944 1.20145 0.93764 0.92371 1.21845 1.17153 0.85722 0.79766 0.79679 1.90847 1.35946 1.70600 1.42030 1.47971 1.21837 1.23355 1.40891 1.21908 0.89385 1.01077 0.89768 1.21905 0.99066 1.00278 0.95967 1.21591 0.95509 0.97910 1.00224 1.21462 0.95378 0.99993 0.94759 0.90699 1.21725 0.95022 0.97573 1.01304 1.20719 0.88078 0.92505 0.96419 1.42377 1.15246 1.16562 1.63645 1.19272 0.92840 0.99918 1.24570 0.91169 1.24733 0.98748 0.96428 1.01355 1.69661 1.34158 1.06560 1.48172 0.86185 0.83790 0.76811 0.79450 1.21779 1.21823 1.20712 1.21840 0.88252 0.92441 0.97941 1.22661 0.89572 0.90078 1.00229 1.98445 1.34389 1.64784 1.96517 1.77245 1.00060 1.07468 1.25981 0.89808 0.88505 0.88456 0.78990 0.90018 0.91319 0.90918 0.91432 0.91683 0.91449 0.91597 0.91812 0.96089 0.96477 0.78400 0.93638 0.88015 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.19 11.44 59.85 0.68 0.87 16 2 N -0.35 -2.47 3.98 -67.60 -0.27 -2.73 16 3 C 0.10 0.73 9.11 -16.57 -0.15 0.58 16 4 C -0.27 -2.98 5.22 -105.04 -0.55 -3.53 16 5 C 0.59 8.09 7.49 -12.54 -0.09 7.99 16 6 O -0.52 -9.30 16.14 5.27 0.08 -9.22 16 7 N -0.61 -6.96 2.97 -174.07 -0.52 -7.48 16 8 C 0.10 0.76 5.47 -3.73 -0.02 0.74 16 9 C -0.13 -1.05 6.08 -26.63 -0.16 -1.21 16 10 C -0.11 -1.12 5.17 -26.69 -0.14 -1.26 16 11 C -0.10 -1.24 2.34 -90.50 -0.21 -1.45 16 12 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.12 -1.89 4.80 -26.73 -0.13 -2.02 16 14 C 0.15 3.17 6.02 -4.04 -0.02 3.14 16 15 N -0.73 -19.45 5.60 -59.91 -0.34 -19.79 16 16 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 19 N -0.94 -29.11 13.06 55.49 0.72 -28.39 16 20 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.12 1.55 5.34 -3.71 -0.02 1.53 16 25 C 0.17 2.05 7.88 -16.90 -0.13 1.92 16 26 Cl 0.03 0.39 28.84 -51.86 -1.50 -1.10 16 27 N -0.28 -3.07 12.50 33.18 0.41 -2.66 16 28 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.19 0.58 7.34 -52.48 -0.39 0.20 16 32 H 0.08 0.50 4.81 -51.93 -0.25 0.25 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.46 6.70 -51.93 -0.35 0.11 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 1.66 5.72 -51.93 -0.30 1.37 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -37.28 380.02 -8.52 -45.80 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.63 Total: 1.94 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.19 Total: -0.35 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.02 Total: -61.05 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.50 Total: -1.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.28 -8.52 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267896257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.516 kcal (2) G-P(sol) polarization free energy of solvation -37.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds