Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34227 * 125.73948 * 2 1 4 4 C 1.38072 * 107.44106 * 180.12351 * 3 2 1 5 5 C 1.47379 * 126.42451 * 179.83582 * 4 3 2 6 6 O 1.21611 * 120.00102 * 139.54958 * 5 4 3 7 7 N 1.34780 * 119.99819 * 319.54445 * 5 4 3 8 8 C 1.46921 * 120.63334 * 354.33138 * 7 5 4 9 9 C 1.53161 * 108.76838 * 233.63225 * 8 7 5 10 10 C 1.53043 * 109.32654 * 305.35382 * 9 8 7 11 11 C 1.53040 * 109.52628 * 61.37541 * 10 9 8 12 12 H 1.08997 * 109.49595 * 58.59277 * 11 10 9 13 13 C 1.52998 * 109.49748 * 178.65980 * 11 10 9 14 14 C 1.53000 * 109.47162 * 184.99950 * 13 11 10 15 15 N 1.46498 * 109.47080 * 179.97438 * 14 13 11 16 16 C 1.36940 * 120.00116 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99481 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00298 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46860 * 90.00141 * 20 18 16 22 22 H 1.48493 * 109.47061 * 210.00268 * 20 18 16 23 23 H 1.48500 * 109.47032 * 330.00465 * 20 18 16 24 24 C 1.46931 * 120.62782 * 174.35511 * 7 5 4 25 25 C 1.41393 * 107.15111 * 359.57205 * 4 3 2 26 26 Cl 1.73598 * 126.00562 * 180.26598 * 25 4 3 27 27 N 1.30531 * 107.98842 * 0.26146 * 25 4 3 28 28 H 1.09002 * 109.46959 * 270.33465 * 1 2 3 29 29 H 1.08999 * 109.47428 * 30.33404 * 1 2 3 30 30 H 1.08999 * 109.47185 * 150.33966 * 1 2 3 31 31 H 1.08007 * 126.28233 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.58716 * 353.41869 * 8 7 5 33 33 H 1.09003 * 109.58317 * 113.69914 * 8 7 5 34 34 H 1.09006 * 109.47946 * 185.41013 * 9 8 7 35 35 H 1.08993 * 109.50628 * 65.32113 * 9 8 7 36 36 H 1.08998 * 109.46002 * 301.36158 * 10 9 8 37 37 H 1.09000 * 109.45631 * 181.39128 * 10 9 8 38 38 H 1.09004 * 109.46616 * 304.99961 * 13 11 10 39 39 H 1.08998 * 109.47291 * 64.99361 * 13 11 10 40 40 H 1.08999 * 109.46877 * 300.00076 * 14 13 11 41 41 H 1.09005 * 109.47200 * 59.99723 * 14 13 11 42 42 H 0.96996 * 120.00128 * 0.02562 * 15 14 13 43 43 H 0.96998 * 120.00133 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58321 * 6.58388 * 24 7 5 45 45 H 1.09002 * 109.58400 * 246.15930 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0895 0.0000 4 6 3.5599 0.6560 -0.0028 5 6 4.7631 1.5072 -0.0073 6 8 5.7242 1.2051 0.6739 7 7 4.7982 2.6203 -0.7664 8 6 3.6974 2.9332 -1.6877 9 6 4.2759 3.1602 -3.0876 10 6 5.3623 4.2359 -3.0184 11 6 6.4918 3.7639 -2.1000 12 1 6.9026 2.8285 -2.4798 13 6 7.5928 4.8254 -2.0576 14 6 8.7755 4.3012 -1.2406 15 7 9.8300 5.3174 -1.2006 16 6 10.9936 5.0703 -0.5221 17 1 11.1339 4.1262 -0.0169 18 6 11.9930 6.0329 -0.4846 19 7 11.8220 7.1833 -1.1008 20 14 13.5799 5.6962 0.4415 21 1 14.5641 5.0670 -0.4754 22 1 14.1318 6.9740 0.9588 23 1 13.3052 4.7797 1.5772 24 6 5.9385 3.5437 -0.6886 25 6 3.5317 -0.7576 0.0055 26 17 4.9153 -1.8060 0.0125 27 7 2.2823 -1.1358 0.0072 28 1 -0.3633 0.0060 1.0277 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3633 -0.8930 -0.5085 31 1 1.9157 2.1168 -0.0004 32 1 2.9945 2.1005 -1.7134 33 1 3.1844 3.8342 -1.3514 34 1 3.4827 3.4870 -3.7601 35 1 4.7076 2.2305 -3.4581 36 1 4.9354 5.1583 -2.6245 37 1 5.7583 4.4168 -4.0177 38 1 7.9224 5.0477 -3.0726 39 1 7.2051 5.7328 -1.5947 40 1 8.4458 4.0789 -0.2258 41 1 9.1632 3.3938 -1.7037 42 1 9.7040 6.1652 -1.6547 43 1 12.5202 7.8562 -1.0743 44 1 6.7143 3.1137 -0.0550 45 1 5.6098 4.4959 -0.2722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267896257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = 21.434979 kcal Electronic energy + Delta-G solvation = -27180.439239 eV Core-core repulsion = 23259.742197 eV Total energy + Delta-G solvation = -3920.697042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65867 -40.86305 -38.74030 -37.88707 -36.93229 -35.04326 -34.22712 -33.38478 -32.39687 -31.63338 -28.96622 -28.08342 -26.48010 -25.88102 -24.02873 -23.43187 -22.36030 -22.09868 -21.29795 -20.30900 -19.15734 -18.28654 -17.73715 -17.06700 -16.83105 -16.65164 -16.25300 -15.92974 -15.72342 -15.47088 -15.28016 -15.15507 -14.74792 -14.64317 -14.20973 -14.17264 -14.07693 -13.73624 -13.54453 -13.40222 -12.97028 -12.86156 -12.68831 -12.65786 -12.53706 -12.28429 -12.13353 -11.94079 -11.91336 -11.83683 -11.68668 -11.50279 -11.15455 -10.96023 -10.92468 -10.48452 -9.87229 -9.52913 -9.01860 -7.97603 -5.26478 0.34185 0.42198 0.77865 1.44949 1.47059 1.56101 1.66653 1.90981 2.21796 2.54349 3.34744 3.35521 3.60636 3.72221 3.84615 3.92166 4.02078 4.12109 4.15254 4.17394 4.38943 4.45066 4.46315 4.47025 4.54043 4.58644 4.71880 4.74972 4.76627 4.76902 4.89752 4.92811 4.97179 5.09921 5.18343 5.28230 5.35434 5.42613 5.46972 5.55849 5.60286 5.73246 6.14840 6.25849 6.45948 7.20818 7.31569 8.06963 8.32372 9.25836 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.002425 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.183101 B =11545.982874 C =12725.474850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.337 5.337 3 C 0.139 3.861 4 C -0.299 4.299 5 C 0.586 3.414 6 O -0.579 6.579 7 N -0.602 5.602 8 C 0.096 3.904 9 C -0.129 4.129 10 C -0.110 4.110 11 C -0.086 4.086 12 H 0.054 0.946 13 C -0.103 4.103 14 C 0.150 3.850 15 N -0.746 5.746 16 C -0.250 4.250 17 H 0.067 0.933 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.274 1.274 24 C 0.120 3.880 25 C 0.146 3.854 26 Cl 0.005 6.995 27 N -0.307 5.307 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.015 0.985 41 H 0.005 0.995 42 H 0.376 0.624 43 H 0.253 0.747 44 H 0.060 0.940 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.541 -11.158 -3.360 36.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.117 5.117 3 C -0.014 4.014 4 C -0.315 4.315 5 C 0.375 3.625 6 O -0.459 6.459 7 N -0.334 5.334 8 C -0.025 4.025 9 C -0.167 4.167 10 C -0.147 4.147 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.141 4.141 14 C 0.023 3.977 15 N -0.388 5.388 16 C -0.382 4.382 17 H 0.085 0.915 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.199 1.199 24 C -0.003 4.003 25 C -0.045 4.045 26 Cl 0.033 6.967 27 N -0.133 5.133 28 H 0.116 0.884 29 H 0.156 0.844 30 H 0.118 0.882 31 H 0.259 0.741 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.023 0.977 42 H 0.208 0.792 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -34.800 -12.537 -2.892 37.102 hybrid contribution 2.353 0.427 0.439 2.432 sum -32.446 -12.110 -2.453 34.719 Atomic orbital electron populations 1.22652 0.69263 1.07629 1.05991 1.48668 1.08679 1.02022 1.52282 1.23735 0.87486 0.95743 0.94420 1.20018 0.94604 0.91559 1.25320 1.17578 0.85864 0.80078 0.79017 1.90808 1.38298 1.72110 1.44671 1.48031 1.22150 1.22265 1.40907 1.22293 0.88326 1.03356 0.88530 1.21902 0.99211 0.98750 0.96887 1.21566 0.94709 0.99232 0.99225 1.21341 0.95668 0.98031 0.95579 0.92697 1.21585 0.93878 0.98588 1.00081 1.20852 0.88715 0.91142 0.96961 1.42571 1.15773 1.17258 1.63243 1.19605 0.94110 0.99876 1.24632 0.91465 1.25568 1.02078 0.96344 1.02621 1.69801 1.35140 1.07319 1.49477 0.85141 0.79599 0.76744 0.78298 1.21183 1.21496 1.19883 1.21629 0.88342 0.93024 0.97289 1.22739 0.89549 0.90423 1.01789 1.98421 1.35963 1.65579 1.96711 1.77174 0.99824 1.09695 1.26583 0.88448 0.84354 0.88244 0.74136 0.88165 0.87786 0.87424 0.93160 0.90000 0.91268 0.91614 0.91101 0.96711 0.97705 0.79198 0.93801 0.92167 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.05 11.44 127.77 1.46 1.41 16 2 N -0.34 -3.59 3.98 -367.77 -1.46 -5.05 16 3 C 0.14 1.40 9.11 84.29 0.77 2.16 16 4 C -0.30 -6.40 5.22 -20.13 -0.11 -6.51 16 5 C 0.59 16.24 7.49 86.65 0.65 16.89 16 6 O -0.58 -22.25 16.14 -4.07 -0.07 -22.32 16 7 N -0.60 -13.06 2.97 -822.88 -2.45 -15.50 16 8 C 0.10 1.03 5.47 86.35 0.47 1.50 16 9 C -0.13 -1.55 6.08 30.66 0.19 -1.36 16 10 C -0.11 -1.84 5.17 30.62 0.16 -1.68 16 11 C -0.09 -2.20 2.34 -10.72 -0.03 -2.23 16 12 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 13 C -0.10 -3.32 4.80 30.59 0.15 -3.17 16 14 C 0.15 6.58 6.02 86.38 0.52 7.10 16 15 N -0.75 -40.65 5.60 -343.45 -1.92 -42.57 16 16 C -0.25 -15.04 9.99 84.03 0.84 -14.20 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -4.44 5.50 84.86 0.47 -3.98 16 19 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 20 Si 0.97 48.38 29.55 68.60 2.03 50.40 16 21 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 24 C 0.12 3.18 5.34 86.36 0.46 3.64 16 25 C 0.15 3.62 7.88 85.66 0.67 4.30 16 26 Cl 0.01 0.15 28.84 -2.72 -0.08 0.07 16 27 N -0.31 -6.36 12.50 -48.95 -0.61 -6.97 16 28 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.14 -1.15 8.14 -2.39 -0.02 -1.17 16 30 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.24 -0.13 7.34 -2.91 -0.02 -0.15 16 32 H 0.10 0.74 4.81 -2.39 -0.01 0.73 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.11 0.64 8.14 -2.38 -0.02 0.63 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.01 0.68 6.70 -2.39 -0.02 0.66 16 41 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 42 H 0.38 21.14 7.67 -92.71 -0.71 20.43 16 43 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 44 H 0.06 2.11 5.72 -2.39 -0.01 2.10 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -87.30 380.02 2.70 -84.61 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.30 Total: 14.03 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.67 Total: 3.88 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -6.16 Total: -130.67 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.40 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -87.30 2.70 -84.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267896257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.042 kcal (2) G-P(sol) polarization free energy of solvation -87.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds