Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35650 * 124.93464 * 2 1 4 4 C 1.35460 * 107.13123 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 127.23738 * 179.73999 * 4 3 2 6 6 C 1.41546 * 105.52453 * 0.02562 * 4 3 2 7 7 C 1.47668 * 126.45952 * 179.97438 * 6 4 3 8 8 O 1.21566 * 120.00364 * 6.35352 * 7 6 4 9 9 N 1.34786 * 119.99625 * 186.35088 * 7 6 4 10 10 C 1.46926 * 120.62704 * 186.71682 * 9 7 6 11 11 C 1.52758 * 109.00832 * 233.58501 * 10 9 7 12 12 C 1.53045 * 109.38236 * 305.59168 * 11 10 9 13 13 C 1.53001 * 109.44792 * 181.25747 * 12 11 10 14 14 C 1.52996 * 109.47566 * 64.93269 * 13 12 11 15 15 N 1.46499 * 109.47196 * 179.97438 * 14 13 12 16 16 C 1.36932 * 120.00247 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00186 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00236 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99921 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47013 * 120.00093 * 20 18 16 23 23 H 1.48500 * 109.47151 * 239.99804 * 20 18 16 24 24 C 1.53037 * 109.53908 * 61.23457 * 12 11 10 25 25 C 1.46924 * 120.63030 * 6.99564 * 9 7 6 26 26 N 1.28469 * 124.93772 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47112 * 90.00045 * 1 2 3 28 28 H 1.08999 * 109.47231 * 209.99500 * 1 2 3 29 29 H 1.08996 * 109.47486 * 330.00202 * 1 2 3 30 30 H 1.07993 * 126.43118 * 0.05688 * 3 2 1 31 31 H 1.09003 * 109.58874 * 353.41877 * 10 9 7 32 32 H 1.08997 * 109.59024 * 113.84461 * 10 9 7 33 33 H 1.08995 * 109.56440 * 185.55434 * 11 10 9 34 34 H 1.09006 * 109.36083 * 65.49581 * 11 10 9 35 35 H 1.09007 * 109.45359 * 301.21358 * 12 11 10 36 36 H 1.09007 * 109.46735 * 184.93899 * 13 12 11 37 37 H 1.08999 * 109.46886 * 304.93184 * 13 12 11 38 38 H 1.08997 * 109.47418 * 300.00132 * 14 13 12 39 39 H 1.09001 * 109.46689 * 60.00385 * 14 13 12 40 40 H 0.97005 * 120.00021 * 359.97438 * 15 14 13 41 41 H 0.96999 * 120.00402 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.49215 * 178.68521 * 24 12 11 43 43 H 1.08997 * 109.51840 * 58.60802 * 24 12 11 44 44 H 1.09004 * 109.58461 * 246.15680 * 25 9 7 45 45 H 1.08996 * 109.58548 * 6.43799 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2417 1.1121 0.0000 4 6 3.5314 0.6979 -0.0006 5 17 4.9542 1.6926 -0.0071 6 6 3.4752 -0.7164 -0.0015 7 6 4.6270 -1.6405 -0.0030 8 8 5.7560 -1.2049 0.1131 9 7 4.4265 -2.9670 -0.1329 10 6 5.5437 -3.9104 0.0104 11 6 5.6011 -4.8052 -1.2264 12 6 4.2389 -5.4706 -1.4356 13 6 4.3037 -6.3913 -2.6558 14 6 5.2778 -7.5381 -2.3783 15 7 5.3393 -8.4200 -3.5465 16 6 6.1509 -9.5228 -3.5298 17 1 6.7454 -9.7427 -2.6553 18 6 6.2096 -10.3581 -4.6369 19 7 5.4848 -10.0906 -5.7024 20 14 7.3162 -11.8629 -4.6138 21 1 8.0194 -11.9403 -3.3082 22 1 6.4943 -13.0848 -4.8059 23 1 8.3140 -11.7604 -5.7088 24 6 3.1738 -4.3956 -1.6638 25 6 3.0878 -3.4966 -0.4265 26 7 2.2006 -1.0532 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 1.8966 2.1354 0.0009 31 1 6.4788 -3.3581 0.1038 32 1 5.3907 -4.5262 0.8966 33 1 6.3630 -5.5720 -1.0871 34 1 5.8483 -4.2002 -2.0989 35 1 3.9811 -6.0555 -0.5526 36 1 3.3124 -6.7974 -2.8576 37 1 4.6470 -5.8243 -3.5210 38 1 6.2690 -7.1320 -2.1765 39 1 4.9343 -8.1051 -1.5131 40 1 4.8046 -8.2232 -4.3315 41 1 5.5261 -10.6741 -6.4761 42 1 2.2082 -4.8710 -1.8359 43 1 3.4433 -3.7945 -2.5323 44 1 2.7304 -4.0779 0.4235 45 1 2.4025 -2.6712 -0.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267908573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 33.274145 kcal Electronic energy + Delta-G solvation = -26948.737312 eV Core-core repulsion = 23028.553656 eV Total energy + Delta-G solvation = -3920.183657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.80695 -41.04144 -38.95457 -37.52412 -36.89278 -35.15728 -34.37174 -32.97265 -32.31218 -31.57221 -30.05965 -28.39730 -26.61593 -24.92758 -24.62787 -23.31468 -22.73245 -22.27656 -21.38918 -20.26281 -19.12829 -18.46255 -17.88314 -17.47855 -16.89957 -16.69273 -16.25482 -15.74289 -15.61092 -15.49813 -15.37134 -15.16802 -14.87064 -14.57529 -14.36684 -14.33346 -14.02250 -13.72365 -13.49722 -13.37576 -13.04056 -12.88355 -12.82760 -12.62836 -12.40650 -12.27506 -12.13278 -12.03351 -11.94003 -11.73379 -11.61190 -11.28657 -11.27839 -10.94706 -10.77638 -10.36079 -9.90863 -9.61259 -8.99749 -7.96229 -5.25166 0.33207 0.83416 0.94650 1.46459 1.47744 1.58021 1.63072 2.02137 2.19728 2.55465 3.22426 3.37363 3.60525 3.72365 3.78244 3.85351 3.89182 4.15005 4.22462 4.31368 4.35736 4.41424 4.45506 4.47452 4.54182 4.56145 4.68523 4.74674 4.76865 4.77441 4.89672 5.00030 5.00535 5.07742 5.13160 5.17729 5.30025 5.40945 5.49058 5.54894 5.56642 5.76211 6.26958 6.30004 6.65500 7.06488 7.32242 8.09581 8.32209 9.27874 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.002004 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.240856 B =13967.445336 C =14693.195376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.271 5.271 3 C 0.025 3.975 4 C -0.134 4.134 5 Cl -0.024 7.024 6 C -0.028 4.028 7 C 0.589 3.411 8 O -0.559 6.559 9 N -0.597 5.597 10 C 0.116 3.884 11 C -0.125 4.125 12 C -0.074 4.074 13 C -0.107 4.107 14 C 0.150 3.850 15 N -0.750 5.750 16 C -0.245 4.245 17 H 0.075 0.925 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.293 1.293 24 C -0.121 4.121 25 C 0.091 3.909 26 N -0.249 5.249 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.235 0.765 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.372 0.628 41 H 0.252 0.748 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.017 27.935 16.165 36.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.058 5.058 3 C -0.119 4.119 4 C -0.172 4.172 5 Cl 0.004 6.996 6 C -0.186 4.186 7 C 0.376 3.624 8 O -0.436 6.436 9 N -0.329 5.329 10 C -0.006 4.006 11 C -0.164 4.164 12 C -0.093 4.093 13 C -0.145 4.145 14 C 0.024 3.976 15 N -0.393 5.393 16 C -0.377 4.377 17 H 0.093 0.907 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.190 1.190 22 H -0.218 1.218 23 H -0.220 1.220 24 C -0.159 4.159 25 C -0.031 4.031 26 N -0.087 5.087 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.251 0.749 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.204 0.796 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.039 27.211 16.346 35.565 hybrid contribution 1.358 -0.267 -0.801 1.599 sum -14.681 26.945 15.545 34.398 Atomic orbital electron populations 1.22812 0.68961 1.07984 1.06692 1.46139 1.09662 1.02093 1.47945 1.23234 0.87815 0.95877 1.05006 1.21079 0.90448 0.90656 1.14999 1.98359 1.36878 1.67068 1.97293 1.21703 0.91459 0.92850 1.12584 1.17268 0.86674 0.81806 0.76621 1.90788 1.23870 1.77044 1.51938 1.48053 1.11264 1.04746 1.68808 1.21573 0.89840 0.90760 0.98441 1.21886 0.98301 0.98613 0.97555 1.21030 0.94898 0.95480 0.97868 1.21621 0.99116 0.95594 0.98136 1.20891 0.96961 0.90508 0.89229 1.42663 1.52464 1.28151 1.15994 1.19701 1.17297 1.01217 0.99468 0.90664 1.25625 1.02456 1.02851 0.96246 1.69825 1.45851 1.40874 1.05673 0.85037 0.77928 0.78991 0.77598 1.19001 1.21787 1.21990 1.21923 0.99824 0.96536 0.97653 1.22566 0.82895 1.00059 0.97610 1.73411 1.01427 1.14165 1.19658 0.87586 0.87453 0.84874 0.74887 0.90264 0.89550 0.90286 0.93126 0.89805 0.91873 0.93256 0.96078 0.96155 0.79604 0.93968 0.88942 0.92929 0.90119 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.10 11.32 127.77 1.45 1.35 16 2 N -0.27 -2.61 3.72 -368.89 -1.37 -3.98 16 3 C 0.03 0.26 11.49 83.46 0.96 1.22 16 4 C -0.13 -2.66 6.80 22.44 0.15 -2.51 16 5 Cl -0.02 -0.54 28.20 -2.72 -0.08 -0.62 16 6 C -0.03 -0.64 6.83 42.45 0.29 -0.35 16 7 C 0.59 16.76 7.69 86.73 0.67 17.42 16 8 O -0.56 -19.30 15.32 -3.92 -0.06 -19.36 16 9 N -0.60 -14.71 2.98 -823.36 -2.45 -17.17 16 10 C 0.12 2.83 6.41 86.22 0.55 3.38 16 11 C -0.13 -3.27 5.13 30.53 0.16 -3.12 16 12 C -0.07 -1.83 2.15 -10.77 -0.02 -1.85 16 13 C -0.11 -3.45 4.80 30.59 0.15 -3.31 16 14 C 0.15 6.14 6.02 86.38 0.52 6.66 16 15 N -0.75 -39.80 5.60 -343.46 -1.92 -41.72 16 16 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 19 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 20 Si 0.98 47.21 29.55 68.60 2.03 49.23 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 C -0.12 -2.55 5.36 30.67 0.16 -2.38 16 25 C 0.09 1.78 6.12 86.36 0.53 2.31 16 26 N -0.25 -4.28 8.44 -48.17 -0.41 -4.68 16 27 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16 28 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.13 -1.01 8.13 -2.39 -0.02 -1.03 16 30 H 0.23 0.16 8.06 -2.91 -0.02 0.13 16 31 H 0.08 2.16 7.00 -2.39 -0.02 2.15 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 2.14 6.50 -2.39 -0.02 2.13 16 34 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.02 0.87 6.53 -2.39 -0.02 0.86 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.37 20.93 7.67 -92.70 -0.71 20.22 16 41 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.13 2.38 4.15 -29.02 -0.12 2.26 16 Total: -1.00 -80.25 377.54 3.08 -77.18 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.19 Total: 20.58 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.87 Total: 1.23 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.87 Total: -128.24 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.23 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -80.25 3.08 -77.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267908573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.451 kcal (2) G-P(sol) polarization free energy of solvation -80.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds