Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.33967 * 122.78214 * 269.70291 * 11 10 9 13 13 O 1.21224 * 125.41571 * 0.04061 * 12 11 10 14 14 C 1.51455 * 109.17196 * 179.90247 * 12 11 10 15 15 C 1.53737 * 103.35976 * 0.33356 * 14 12 11 16 16 C 1.52442 * 110.36211 * 118.57929 * 15 14 12 17 17 C 1.53132 * 109.61676 * 182.28638 * 16 15 14 18 18 C 1.53178 * 109.29180 * 299.56448 * 17 16 15 19 19 N 1.46932 * 108.90066 * 55.09755 * 18 17 16 20 20 C 1.34773 * 120.68737 * 125.96887 * 19 18 17 21 21 O 1.21288 * 120.00000 * 179.97438 * 20 19 18 22 22 C 1.50694 * 120.00216 * 359.97438 * 20 19 18 23 23 C 1.53002 * 109.47566 * 179.97438 * 22 20 19 24 24 F 1.39891 * 109.47417 * 179.97438 * 23 22 20 25 25 C 1.47046 * 118.62467 * 305.94840 * 19 18 17 26 26 C 1.34048 * 122.78796 * 89.99714 * 11 10 9 27 27 O 1.21231 * 125.50096 * 359.92877 * 26 11 10 28 28 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 30 30 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 31 31 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 32 32 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 33 33 H 1.08997 * 110.80654 * 241.79171 * 14 12 11 34 34 H 1.08998 * 110.61818 * 118.79114 * 14 12 11 35 35 H 1.09002 * 109.44483 * 302.33612 * 16 15 14 36 36 H 1.09007 * 109.44778 * 62.24463 * 16 15 14 37 37 H 1.09002 * 109.50271 * 179.62144 * 17 16 15 38 38 H 1.09003 * 109.53306 * 59.53203 * 17 16 15 39 39 H 1.09001 * 109.57039 * 295.26878 * 18 17 16 40 40 H 1.09006 * 109.66456 * 174.97577 * 18 17 16 41 41 H 1.08998 * 109.47004 * 300.00037 * 22 20 19 42 42 H 1.08998 * 109.47422 * 59.99586 * 22 20 19 43 43 H 1.08998 * 109.47119 * 300.00125 * 23 22 20 44 44 H 1.08998 * 109.46959 * 59.99461 * 23 22 20 45 45 H 1.09001 * 109.57754 * 292.92947 * 25 19 18 46 46 H 1.08997 * 109.69135 * 172.59182 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 1.1549 -5.5622 1.1248 13 8 1.3841 -5.1752 2.2505 14 6 0.4153 -6.8348 0.7678 15 6 0.4186 -6.8282 -0.7695 16 6 1.1614 -8.0476 -1.3036 17 6 1.2037 -7.9945 -2.8334 18 6 -0.2273 -7.9992 -3.3797 19 7 -0.9741 -6.8916 -2.7679 20 6 -1.6121 -5.9856 -3.5350 21 8 -2.2252 -5.0764 -3.0167 22 6 -1.5637 -6.1021 -5.0367 23 6 -2.3631 -4.9578 -5.6631 24 9 -2.3177 -5.0656 -7.0571 25 6 -1.0112 -6.7923 -1.3012 26 6 1.1503 -5.5591 -1.1284 27 8 1.3738 -5.1697 -2.2545 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6043 -0.8905 32 1 2.8720 -3.6043 0.8894 33 1 -0.6052 -6.8097 1.1499 34 1 0.9459 -7.7070 1.1495 35 1 2.1787 -8.0529 -0.9123 36 1 0.6461 -8.9542 -0.9861 37 1 1.7410 -8.8636 -3.2130 38 1 1.7121 -7.0846 -3.1526 39 1 -0.7094 -8.9451 -3.1325 40 1 -0.2072 -7.8719 -4.4621 41 1 -0.5280 -6.0484 -5.3720 42 1 -1.9952 -7.0555 -5.3413 43 1 -3.3988 -5.0119 -5.3277 44 1 -1.9320 -4.0041 -5.3585 45 1 -1.5742 -7.6314 -0.8925 46 1 -1.4866 -5.8562 -1.0084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269124899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = -158.739138 kcal Electronic energy + Delta-G solvation = -31354.866697 eV Core-core repulsion = 26965.727593 eV Total energy + Delta-G solvation = -4389.139104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.71578 -42.17022 -40.06454 -38.40701 -37.31685 -35.61337 -34.51545 -33.06382 -32.38226 -32.06165 -30.06426 -27.93254 -26.18841 -25.31058 -24.39250 -23.50443 -22.44787 -21.81814 -20.70451 -19.62496 -18.41996 -17.61172 -17.08001 -16.61503 -16.45021 -16.23419 -16.07177 -16.00111 -15.27550 -15.08435 -14.85426 -14.78666 -14.52545 -14.21289 -14.18423 -13.86945 -13.69484 -13.37058 -13.28161 -12.97623 -12.79843 -12.72164 -12.43318 -12.32026 -12.06242 -11.60996 -11.44949 -11.41291 -11.19172 -11.00408 -10.93190 -10.91322 -10.82511 -10.27426 -10.10660 -10.00865 -9.88502 -9.62964 -9.23773 -8.91365 -8.82586 -8.37100 -6.01135 -4.05830 1.75466 2.48104 2.70577 2.86578 3.04002 3.34711 3.38587 3.41173 3.91834 4.14549 4.15312 4.25214 4.38213 4.42676 4.45923 4.63698 4.66646 4.68016 4.77274 5.00610 5.06088 5.11722 5.17363 5.24093 5.31394 5.34808 5.37785 5.43268 5.47057 5.48440 5.59852 5.73489 5.82899 5.89529 5.93318 6.07334 6.21715 6.28171 6.65770 7.15728 7.18568 7.58667 7.63049 7.70665 7.92925 8.02653 8.10375 8.32515 8.98826 9.58136 11.10285 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.004237 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.289146 B = 6606.809055 C = 8868.014941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.016 3.984 10 C 0.102 3.898 11 N -0.566 5.566 12 C 0.524 3.476 13 O -0.480 6.480 14 C -0.149 4.149 15 C -0.115 4.115 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.111 3.889 19 N -0.608 5.608 20 C 0.525 3.475 21 O -0.528 6.528 22 C -0.171 4.171 23 C 0.074 3.926 24 F -0.219 7.219 25 C 0.134 3.866 26 C 0.537 3.463 27 O -0.466 6.466 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 -23.871 -7.119 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.022 4.022 10 C -0.017 4.017 11 N -0.308 5.308 12 C 0.312 3.688 13 O -0.351 6.351 14 C -0.190 4.190 15 C -0.120 4.120 16 C -0.134 4.134 17 C -0.187 4.187 18 C -0.012 4.012 19 N -0.342 5.342 20 C 0.313 3.687 21 O -0.404 6.404 22 C -0.211 4.211 23 C 0.019 3.981 24 F -0.200 7.200 25 C 0.011 3.989 26 C 0.324 3.676 27 O -0.337 6.337 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.209 -22.780 -6.896 23.903 hybrid contribution 0.589 0.943 0.043 1.113 sum -1.620 -21.837 -6.853 22.944 Atomic orbital electron populations 1.69968 1.06117 1.26947 1.49760 1.24997 0.94861 0.99344 0.94939 0.86578 0.79529 0.82783 0.78662 1.20124 1.21174 1.20108 1.20940 0.92946 0.90370 1.52049 0.92418 1.19353 0.94110 0.90779 0.97971 1.22257 0.96122 0.80599 1.02748 1.47046 1.51350 1.24022 1.08340 1.20646 0.78278 0.85598 0.84287 1.90768 1.53316 1.69806 1.21242 1.22555 1.04292 0.98246 0.93869 1.21532 0.98263 0.96157 0.96012 1.21376 1.00505 0.95267 0.96218 1.22103 0.96965 1.04446 0.95165 1.21739 0.91827 0.89185 0.98474 1.47921 1.52073 1.28128 1.06041 1.20262 0.78458 0.81018 0.88921 1.90793 1.42563 1.32157 1.74878 1.22194 1.04292 1.01654 0.92940 1.21697 1.02180 0.99659 0.74569 1.92756 1.98027 1.97538 1.31653 1.21397 0.92775 1.04820 0.79914 1.20201 0.78027 0.84946 0.84414 1.90688 1.52777 1.69125 1.21061 0.92756 0.95982 0.96086 0.90171 0.90044 0.86119 0.86138 0.90787 0.89887 0.90151 0.89184 0.91050 0.89461 0.87433 0.87938 0.89866 0.89403 0.89560 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.32 9.11 -34.44 -0.31 -15.63 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.43 5.30 -27.88 -0.15 0.28 16 10 C 0.10 2.23 5.50 -4.04 -0.02 2.20 16 11 N -0.57 -10.35 2.56 -115.41 -0.30 -10.64 16 12 C 0.52 8.59 8.09 -10.98 -0.09 8.50 16 13 O -0.48 -9.55 17.48 5.61 0.10 -9.45 16 14 C -0.15 -1.49 6.30 -27.13 -0.17 -1.66 16 15 C -0.12 -1.24 0.69 -155.71 -0.11 -1.34 16 16 C -0.10 -0.70 4.52 -26.95 -0.12 -0.82 16 17 C -0.15 -1.11 5.81 -26.57 -0.15 -1.26 16 18 C 0.11 0.75 6.33 -3.71 -0.02 0.73 16 19 N -0.61 -6.51 2.52 -173.04 -0.44 -6.95 16 20 C 0.53 6.95 7.70 -10.99 -0.08 6.87 16 21 O -0.53 -9.47 15.41 5.55 0.09 -9.39 16 22 C -0.17 -1.67 4.50 -27.88 -0.13 -1.80 16 23 C 0.07 0.85 6.84 37.16 0.25 1.10 16 24 F -0.22 -2.67 17.36 2.25 0.04 -2.63 16 25 C 0.13 1.44 4.93 -3.95 -0.02 1.42 16 26 C 0.54 8.76 6.49 -11.25 -0.07 8.69 16 27 O -0.47 -8.83 14.96 5.60 0.08 -8.74 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.72 7.84 -51.93 -0.41 1.32 16 32 H 0.08 1.75 7.83 -51.93 -0.41 1.34 16 33 H 0.12 1.00 7.71 -51.93 -0.40 0.60 16 34 H 0.12 0.82 7.72 -51.93 -0.40 0.41 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.98 5.96 -51.93 -0.31 0.67 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.49 5.93 -51.93 -0.31 0.18 16 41 H 0.11 0.99 7.71 -51.93 -0.40 0.59 16 42 H 0.10 0.70 7.93 -51.93 -0.41 0.28 16 43 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 44 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.45 7.01 -51.93 -0.36 1.09 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -38.20 376.89 -7.08 -45.27 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.75 Total: -2.32 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.30 Total: 8.98 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.00 Total: -44.65 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: 0.27 Total: -27.58 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.20 -7.08 -45.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269124899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.465 kcal (2) G-P(sol) polarization free energy of solvation -38.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds