Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.39927 * 125.74812 * 2 1 4 4 C 1.30421 * 108.95839 * 179.73244 * 3 2 1 5 5 C 1.41338 * 108.04883 * 0.41449 * 4 3 2 6 6 C 1.47294 * 126.43830 * 179.85070 * 5 4 3 7 7 O 1.21622 * 120.00288 * 139.86645 * 6 5 4 8 8 N 1.34787 * 119.99900 * 319.87211 * 6 5 4 9 9 C 1.46918 * 120.62670 * 354.07004 * 8 6 5 10 10 C 1.53191 * 108.77427 * 233.88243 * 9 8 6 11 11 C 1.53040 * 109.31288 * 305.36819 * 10 9 8 12 12 C 1.53004 * 109.46004 * 181.38636 * 11 10 9 13 13 C 1.52995 * 109.47514 * 64.93209 * 12 11 10 14 14 N 1.46497 * 109.47390 * 180.02562 * 13 12 11 15 15 C 1.36933 * 120.00144 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99853 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99910 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46910 * 90.00063 * 19 17 15 21 21 H 1.48493 * 109.47130 * 210.00476 * 19 17 15 22 22 H 1.48502 * 109.47100 * 330.00442 * 19 17 15 23 23 C 1.53038 * 109.53922 * 61.36381 * 11 10 9 24 24 C 1.46923 * 120.63040 * 174.34943 * 8 6 5 25 25 C 1.34345 * 125.75242 * 180.02562 * 2 1 3 26 26 Cl 1.73597 * 126.31793 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47563 * 269.99360 * 1 2 3 28 28 H 1.09003 * 109.47699 * 29.99993 * 1 2 3 29 29 H 1.09000 * 109.47390 * 149.99649 * 1 2 3 30 30 H 1.07999 * 125.97324 * 180.26193 * 4 3 2 31 31 H 1.08998 * 109.59240 * 353.66905 * 9 8 6 32 32 H 1.09001 * 109.58709 * 114.09665 * 9 8 6 33 33 H 1.08999 * 109.50136 * 185.41244 * 10 9 8 34 34 H 1.09001 * 109.49800 * 65.31534 * 10 9 8 35 35 H 1.08996 * 109.46332 * 301.34025 * 11 10 9 36 36 H 1.09005 * 109.46771 * 184.93569 * 12 11 10 37 37 H 1.09002 * 109.46996 * 304.92924 * 12 11 10 38 38 H 1.09006 * 109.46659 * 300.00067 * 13 12 11 39 39 H 1.09002 * 109.47222 * 59.99853 * 13 12 11 40 40 H 0.97004 * 119.99555 * 359.97438 * 14 13 12 41 41 H 0.97002 * 120.00007 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.50080 * 178.68216 * 23 11 10 43 43 H 1.08998 * 109.52258 * 58.60118 * 23 11 10 44 44 H 1.08997 * 109.58771 * 245.90591 * 24 8 6 45 45 H 1.09003 * 109.58366 * 6.18409 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2824 1.1356 0.0000 4 6 3.5310 0.7589 0.0058 5 6 3.5621 -0.6541 0.0000 6 6 4.7660 -1.5027 0.0004 7 8 4.7970 -2.5141 0.6753 8 7 5.8335 -1.1583 -0.7470 9 6 5.7663 -0.0135 -1.6653 10 6 6.1828 -0.4785 -3.0642 11 6 7.5593 -1.1430 -2.9877 12 6 7.9940 -1.5778 -4.3888 13 6 8.1879 -0.3417 -5.2693 14 7 8.6035 -0.7581 -6.6110 15 6 8.8377 0.1826 -7.5780 16 1 8.7164 1.2316 -7.3516 17 6 9.2320 -0.2119 -8.8492 18 7 9.3802 -1.4904 -9.1250 19 14 9.5521 1.0714 -10.1682 20 1 10.9786 1.4820 -10.1235 21 1 9.2438 0.4974 -11.5026 22 1 8.6886 2.2552 -9.9271 23 6 7.4862 -2.3680 -2.0734 24 6 7.0844 -1.9244 -0.6633 25 6 2.2499 -1.0903 -0.0005 26 17 1.7154 -2.7419 -0.0019 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 4.3908 1.4124 0.0112 31 1 4.7467 0.3706 -1.6965 32 1 6.4435 0.7693 -1.3237 33 1 6.2300 0.3802 -3.7340 34 1 5.4534 -1.1951 -3.4416 35 1 8.2833 -0.4335 -2.5871 36 1 8.9325 -2.1283 -4.3235 37 1 7.2270 -2.2179 -4.8249 38 1 7.2493 0.2087 -5.3345 39 1 8.9549 0.2983 -4.8333 40 1 8.7127 -1.7003 -6.8142 41 1 9.6554 -1.7661 -10.0134 42 1 8.4611 -2.8542 -2.0379 43 1 6.7447 -3.0672 -2.4599 44 1 7.8692 -1.2975 -0.2399 45 1 6.9352 -2.7998 -0.0311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269877259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = 22.358999 kcal Electronic energy + Delta-G solvation = -27015.760354 eV Core-core repulsion = 23095.103381 eV Total energy + Delta-G solvation = -3920.656973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.65042 -40.84569 -38.84745 -38.09889 -36.83785 -35.13841 -34.50976 -32.99728 -32.17116 -31.25724 -29.87474 -28.23171 -26.58952 -24.92291 -24.33476 -23.51954 -22.40619 -22.15799 -21.32569 -20.23265 -19.11418 -18.64770 -17.66718 -17.03011 -16.90826 -16.64916 -16.23442 -15.76754 -15.68117 -15.44797 -15.31741 -15.06490 -14.78938 -14.68617 -14.36132 -14.05353 -13.94151 -13.71993 -13.61371 -13.26459 -13.06224 -12.99225 -12.86352 -12.82434 -12.47899 -12.25306 -12.13627 -12.09438 -12.03165 -11.92396 -11.59318 -11.33635 -11.14488 -10.93992 -10.86587 -10.55140 -9.89879 -9.54350 -8.97296 -7.94109 -5.22945 0.13915 0.18338 1.01194 1.44979 1.47986 1.50196 1.58579 1.86937 2.21031 2.57366 3.24694 3.39696 3.67932 3.74377 3.80216 3.86085 3.96446 4.11704 4.22531 4.26708 4.29402 4.35975 4.41219 4.46699 4.57123 4.58128 4.64616 4.68367 4.81523 4.90704 4.95424 5.02844 5.10948 5.11522 5.16433 5.26087 5.34189 5.39987 5.44834 5.51263 5.60297 5.65590 6.22670 6.28858 6.40709 7.15816 7.34135 8.12522 8.34042 9.29900 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.002216 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.653986 B =12631.151058 C =13349.719982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.350 5.350 3 N -0.286 5.286 4 C 0.097 3.903 5 C -0.285 4.285 6 C 0.593 3.407 7 O -0.573 6.573 8 N -0.600 5.600 9 C 0.106 3.894 10 C -0.129 4.129 11 C -0.072 4.072 12 C -0.109 4.109 13 C 0.151 3.849 14 N -0.752 5.752 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.267 1.267 23 C -0.122 4.122 24 C 0.116 3.884 25 C 0.166 3.834 26 Cl 0.022 6.978 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.228 0.772 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.021 0.979 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 3.730 24.512 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.132 5.132 3 N -0.108 5.108 4 C -0.089 4.089 5 C -0.301 4.301 6 C 0.381 3.619 7 O -0.453 6.453 8 N -0.332 5.332 9 C -0.016 4.016 10 C -0.168 4.168 11 C -0.091 4.091 12 C -0.147 4.147 13 C 0.025 3.975 14 N -0.394 5.394 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.804 3.196 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.192 1.192 23 C -0.160 4.160 24 C -0.006 4.006 25 C 0.006 3.994 26 Cl 0.050 6.950 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.245 0.755 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.203 0.797 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.396 4.252 24.811 31.178 hybrid contribution 0.696 -1.049 -1.265 1.784 sum -17.700 3.203 23.546 29.630 Atomic orbital electron populations 1.22496 0.70715 1.06875 1.05958 1.48853 1.08736 1.01488 1.54127 1.77347 1.02323 1.05854 1.25227 1.24488 0.96106 0.92420 0.95856 1.19884 0.91463 0.94990 1.23798 1.17333 0.82083 0.83523 0.78945 1.90765 1.82485 1.27416 1.44649 1.47993 1.12418 1.31897 1.40856 1.22115 1.03775 0.87728 0.87986 1.21998 0.96503 1.01278 0.96981 1.21010 0.97277 0.97412 0.93441 1.21639 1.00700 0.97154 0.95217 1.20897 0.96515 0.95873 0.84165 1.42688 1.82265 1.05943 1.08515 1.19678 1.36625 0.89965 0.91304 0.90443 1.25624 1.03418 0.98053 1.00139 1.69829 1.55749 1.15521 1.21278 0.85114 0.77941 0.78362 0.78213 1.21306 1.22285 1.19199 1.21899 1.02241 0.97480 0.94411 1.21657 0.84875 0.96869 0.97160 1.22136 0.91018 0.84415 1.01808 1.98452 1.89960 1.10190 1.96378 0.88033 0.86656 0.87702 0.75540 0.88742 0.88132 0.89897 0.93192 0.89381 0.92443 0.93413 0.95628 0.96055 0.79738 0.94050 0.89615 0.93112 0.89061 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.28 127.77 1.44 2.02 16 2 N -0.35 -5.64 3.98 -357.43 -1.42 -7.07 16 3 N -0.29 -5.04 12.49 -56.26 -0.70 -5.74 16 4 C 0.10 1.54 9.63 85.67 0.82 2.37 16 5 C -0.29 -5.89 5.20 -20.12 -0.10 -5.99 16 6 C 0.59 14.28 7.47 86.62 0.65 14.93 16 7 O -0.57 -17.63 16.05 -4.10 -0.07 -17.69 16 8 N -0.60 -11.87 2.97 -822.94 -2.45 -14.31 16 9 C 0.11 1.65 5.48 86.36 0.47 2.13 16 10 C -0.13 -2.67 5.14 30.67 0.16 -2.51 16 11 C -0.07 -1.60 2.15 -10.77 -0.02 -1.62 16 12 C -0.11 -3.36 4.80 30.59 0.15 -3.21 16 13 C 0.15 5.85 6.02 86.38 0.52 6.37 16 14 N -0.75 -38.79 5.60 -343.46 -1.92 -40.71 16 15 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 18 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 19 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.12 -2.50 5.36 30.67 0.16 -2.33 16 24 C 0.12 2.20 6.44 86.36 0.56 2.76 16 25 C 0.17 3.27 7.52 84.32 0.63 3.90 16 26 Cl 0.02 0.42 28.15 -2.72 -0.08 0.34 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.52 7.77 -2.39 -0.02 0.50 16 30 H 0.23 1.99 7.37 -2.91 -0.02 1.97 16 31 H 0.09 1.37 4.79 -2.39 -0.01 1.35 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.76 6.50 -2.39 -0.02 1.74 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.03 0.97 6.53 -2.38 -0.02 0.96 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.37 20.53 7.67 -92.71 -0.71 19.82 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.76 6.99 -2.39 -0.02 1.74 16 Total: -1.00 -75.65 378.49 2.72 -72.93 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.30 Total: 22.48 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.74 Total: 1.68 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.21 Total: -128.02 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.07 Total: -17.69 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -75.65 2.72 -72.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269877259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.290 kcal (2) G-P(sol) polarization free energy of solvation -75.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds