Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28785 * 125.44725 * 2 1 4 4 N 1.28999 * 108.72424 * 179.72661 * 3 2 1 5 5 C 1.33319 * 107.35384 * 0.43206 * 4 3 2 6 6 C 1.50695 * 126.54899 * 179.83322 * 5 4 3 7 7 N 1.46895 * 109.47259 * 269.68866 * 6 5 4 8 8 C 1.46900 * 110.99919 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.99891 * 295.36076 * 9 8 7 11 11 C 1.54330 * 109.88292 * 174.26451 * 9 8 7 12 12 C 1.55155 * 102.94292 * 218.39370 * 11 9 8 13 13 C 1.54907 * 101.58383 * 35.49718 * 12 11 9 14 14 N 1.47026 * 109.88297 * 56.45899 * 9 8 7 15 15 C 1.34780 * 125.64391 * 298.39213 * 14 9 8 16 16 O 1.21275 * 120.00008 * 359.97438 * 15 14 9 17 17 C 1.50701 * 119.99768 * 180.02562 * 15 14 9 18 18 S 1.80995 * 109.47017 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00037 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99773 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00367 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99513 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00093 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46959 * 60.00269 * 23 21 19 25 25 H 1.48500 * 109.46880 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47452 * 300.00327 * 23 21 19 27 27 N 1.28880 * 125.44879 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47254 * 270.00011 * 1 2 3 29 29 H 1.09008 * 109.47416 * 30.00092 * 1 2 3 30 30 H 1.08997 * 109.47211 * 150.00079 * 1 2 3 31 31 H 1.08997 * 109.46879 * 149.68605 * 6 5 4 32 32 H 1.08995 * 109.47010 * 29.69230 * 6 5 4 33 33 H 1.00903 * 111.00409 * 303.95609 * 7 6 5 34 34 H 1.09000 * 109.47260 * 60.00640 * 8 7 6 35 35 H 1.08997 * 109.47445 * 299.99864 * 8 7 6 36 36 H 1.08998 * 110.71700 * 336.75297 * 11 9 8 37 37 H 1.08991 * 110.72004 * 100.02588 * 11 9 8 38 38 H 1.09001 * 111.00015 * 277.42463 * 12 11 9 39 39 H 1.08994 * 111.03653 * 153.59161 * 12 11 9 40 40 H 1.08997 * 110.36783 * 204.15179 * 13 12 11 41 41 H 1.08997 * 110.45914 * 81.87830 * 13 12 11 42 42 H 1.09001 * 109.47109 * 300.00058 * 17 15 14 43 43 H 1.09004 * 109.46946 * 59.99745 * 17 15 14 44 44 H 0.96996 * 119.99809 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0492 0.0000 4 7 3.4473 0.6780 0.0058 5 6 3.4620 -0.6551 0.0000 6 6 4.6824 -1.5391 -0.0001 7 7 5.0790 -1.8263 -1.3850 8 6 6.2686 -2.6873 -1.4242 9 6 6.6506 -2.9632 -2.8799 10 1 5.8630 -3.5355 -3.3699 11 6 7.9796 -3.7460 -2.9344 12 6 8.7000 -3.1228 -4.1592 13 6 8.2594 -1.6411 -4.0585 14 7 6.8624 -1.6937 -3.5906 15 6 5.9333 -0.7362 -3.7819 16 8 4.8098 -0.8866 -3.3506 17 6 6.2902 0.5207 -4.5328 18 16 4.8412 1.6016 -4.6230 19 6 5.5230 2.9526 -5.5254 20 1 6.5563 2.9261 -5.8388 21 6 4.7323 4.0510 -5.8335 22 7 3.4733 4.0835 -5.4511 23 14 5.4554 5.4836 -6.7896 24 1 5.9352 5.0050 -8.1110 25 1 4.4133 6.5228 -6.9876 26 1 6.5927 6.0621 -6.0300 27 7 2.2124 -1.0499 -0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4546 -2.4730 0.5138 32 1 5.4987 -1.0315 0.5138 33 1 4.3165 -2.2389 -1.9014 34 1 6.0522 -3.6292 -0.9203 35 1 7.0958 -2.1872 -0.9205 36 1 8.5584 -3.5869 -2.0246 37 1 7.7952 -4.8081 -3.0947 38 1 8.3499 -3.5722 -5.0885 39 1 9.7819 -3.2159 -4.0659 40 1 8.3143 -1.1617 -5.0358 41 1 8.8804 -1.1070 -3.3393 42 1 7.0976 1.0372 -4.0137 43 1 6.6134 0.2620 -5.5412 44 1 2.9208 4.8512 -5.6661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270006483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = 95.898153 kcal Electronic energy + Delta-G solvation = -27742.711809 eV Core-core repulsion = 23859.580190 eV Total energy + Delta-G solvation = -3883.131619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.24260 -40.98780 -38.22323 -37.21535 -35.80181 -34.57655 -34.10727 -32.77838 -31.38481 -30.06248 -29.43151 -27.64440 -27.39312 -25.03019 -24.01068 -23.31675 -22.92605 -21.89150 -20.18910 -19.40118 -18.54562 -18.37483 -18.00284 -17.43957 -16.87748 -16.57288 -16.16365 -15.89586 -15.75006 -15.52684 -15.02682 -14.85302 -14.63243 -14.43415 -14.19598 -14.00454 -13.87798 -13.73595 -13.49262 -13.19750 -13.04355 -12.97648 -12.84529 -12.79479 -12.60353 -12.43953 -12.04404 -11.97678 -11.91919 -11.83449 -11.69134 -11.52890 -11.12157 -11.05373 -10.42503 -10.21091 -9.54811 -8.87199 -8.60419 -8.33080 -6.09002 0.25507 1.14870 1.25152 1.28117 1.42140 1.46436 1.58541 1.97504 2.26418 2.35510 2.92173 3.00141 3.32293 3.36532 3.42142 3.70055 3.83288 4.00159 4.07005 4.15593 4.21798 4.28756 4.32468 4.37097 4.40480 4.49957 4.50865 4.57729 4.64157 4.68323 4.78147 4.82898 4.85885 4.91730 5.04560 5.16508 5.21598 5.29382 5.40489 5.43925 5.64915 6.15809 6.19684 6.51483 6.71992 7.07361 7.41020 7.55738 8.75851 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007048 B = 0.004840 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.924313 B = 5783.572759 C = 9343.851447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.132 5.132 3 N -0.090 5.090 4 N -0.304 5.304 5 C 0.172 3.828 6 C 0.162 3.838 7 N -0.673 5.673 8 C 0.054 3.946 9 C 0.135 3.865 10 H 0.059 0.941 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.089 3.911 14 N -0.612 5.612 15 C 0.547 3.453 16 O -0.511 6.511 17 C -0.118 4.118 18 S -0.141 6.141 19 C -0.549 4.549 20 H 0.076 0.924 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.264 1.264 27 N -0.315 5.315 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.345 0.655 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -19.685 10.058 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.046 5.046 3 N -0.084 5.084 4 N -0.175 5.175 5 C -0.111 4.111 6 C 0.030 3.970 7 N -0.310 5.310 8 C -0.075 4.075 9 C 0.031 3.969 10 H 0.077 0.923 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.034 4.034 14 N -0.349 5.349 15 C 0.333 3.667 16 O -0.384 6.384 17 C -0.270 4.270 18 S 0.087 5.913 19 C -0.697 4.697 20 H 0.094 0.906 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.818 3.182 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.188 1.188 27 N -0.168 5.168 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.166 0.834 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.926 -18.607 10.628 21.785 hybrid contribution 0.921 0.360 -0.912 1.345 sum 4.847 -18.247 9.716 21.233 Atomic orbital electron populations 1.22957 0.66482 1.08281 1.08069 1.50502 1.12133 1.00204 1.41794 1.78939 0.96980 1.15374 1.17096 1.75811 1.10412 1.12841 1.18392 1.25895 0.93812 0.90435 1.00997 1.20150 0.89036 0.95254 0.92542 1.60809 1.09244 1.51142 1.09764 1.22499 0.93015 0.95505 0.96467 1.21796 0.99414 0.84326 0.91360 0.92297 1.22653 0.92711 0.99910 0.99715 1.22747 1.02160 0.92217 0.98715 1.22537 0.81469 0.99616 0.99775 1.48319 1.11388 1.18349 1.56852 1.19240 0.84762 0.83140 0.79521 1.90588 1.21691 1.78348 1.47798 1.23287 1.03254 0.97668 1.02750 1.85497 1.15005 1.17139 1.73688 1.23179 1.00169 1.05413 1.40928 0.90552 1.26109 0.94977 1.01182 0.96770 1.70190 1.07716 1.31458 1.45409 0.85037 0.78037 0.76530 0.78588 1.18494 1.20134 1.18845 1.74499 1.03298 1.15887 1.23104 0.85032 0.86206 0.85466 0.90459 0.88377 0.83352 0.91943 0.90487 0.88734 0.87966 0.90680 0.87268 0.91385 0.90941 0.89518 0.89032 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 11.63 127.77 1.49 2.84 16 2 N -0.13 -4.16 4.40 -206.73 -0.91 -5.07 16 3 N -0.09 -3.62 13.25 37.02 0.49 -3.12 16 4 N -0.30 -13.09 12.50 -51.26 -0.64 -13.73 16 5 C 0.17 6.15 7.88 138.55 1.09 7.24 16 6 C 0.16 4.50 6.31 85.56 0.54 5.04 16 7 N -0.67 -20.39 3.30 -517.96 -1.71 -22.10 16 8 C 0.05 1.13 5.27 86.30 0.46 1.59 16 9 C 0.13 2.81 3.29 45.34 0.15 2.95 16 10 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 11 C -0.11 -1.26 6.48 31.78 0.21 -1.06 16 12 C -0.12 -1.46 7.08 31.98 0.23 -1.24 16 13 C 0.09 1.80 6.69 86.86 0.58 2.38 16 14 N -0.61 -17.21 3.07 -788.05 -2.42 -19.62 16 15 C 0.55 21.90 7.43 87.66 0.65 22.55 16 16 O -0.51 -23.67 12.00 -3.01 -0.04 -23.71 16 17 C -0.12 -5.29 5.16 71.24 0.37 -4.93 16 18 S -0.14 -8.38 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -33.45 9.50 67.96 0.65 -32.80 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.85 5.49 84.86 0.47 1.32 16 22 N -0.91 -58.68 13.22 21.65 0.29 -58.39 16 23 Si 1.00 45.86 29.55 68.60 2.03 47.89 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 27 N -0.31 -10.36 12.13 -51.20 -0.62 -10.98 16 28 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.59 16 33 H 0.35 11.72 7.38 -89.69 -0.66 11.06 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.55 8.06 -2.39 -0.02 1.54 16 36 H 0.09 0.82 7.79 -2.39 -0.02 0.80 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 1.47 7.48 -2.39 -0.02 1.45 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.09 3.82 7.85 -2.39 -0.02 3.80 16 44 H 0.27 16.14 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -90.92 379.92 2.54 -88.38 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.36 Total: 24.10 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 6.87 Total: 5.89 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -5.52 Total: -133.01 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.04 Total: -23.71 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -90.92 2.54 -88.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270006483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.279 kcal (2) G-P(sol) polarization free energy of solvation -90.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds