Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28433 * 125.18248 * 2 1 4 4 C 1.30847 * 110.98127 * 179.72909 * 3 2 1 5 5 C 1.39811 * 107.86919 * 0.41620 * 4 3 2 6 6 Cl 1.73599 * 127.33298 * 179.85799 * 5 4 3 7 7 C 1.36745 * 125.18917 * 179.97438 * 2 1 3 8 8 C 1.47030 * 126.90315 * 359.97438 * 7 2 1 9 9 O 1.21642 * 119.99936 * 91.62562 * 8 7 2 10 10 N 1.34772 * 119.99862 * 271.61916 * 8 7 2 11 11 C 1.46505 * 119.99722 * 184.64869 * 10 8 7 12 12 C 1.53002 * 109.46876 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46777 * 180.02562 * 12 11 10 14 14 C 1.53043 * 109.45837 * 295.02421 * 13 12 11 15 15 C 1.53191 * 109.31138 * 178.60331 * 14 13 12 16 16 N 1.46921 * 108.76351 * 54.65714 * 15 14 13 17 17 C 1.36941 * 120.62662 * 126.40810 * 16 15 14 18 18 H 1.07998 * 120.00084 * 328.64059 * 17 16 15 19 19 C 1.38809 * 119.99853 * 148.64945 * 17 16 15 20 20 N 1.31619 * 120.00301 * 349.20412 * 19 17 16 21 21 Si 1.86796 * 120.00127 * 169.20867 * 19 17 16 22 22 H 1.48506 * 109.47405 * 89.99854 * 21 19 17 23 23 H 1.48503 * 109.47433 * 209.99753 * 21 19 17 24 24 H 1.48504 * 109.47351 * 329.99986 * 21 19 17 25 25 C 1.46920 * 118.74100 * 306.38059 * 16 15 14 26 26 C 1.53041 * 109.45668 * 174.97397 * 13 12 11 27 27 H 1.08994 * 109.47540 * 274.85288 * 1 2 3 28 28 H 1.09002 * 109.46810 * 34.85797 * 1 2 3 29 29 H 1.08998 * 109.46721 * 154.84900 * 1 2 3 30 30 H 1.07996 * 126.06113 * 180.29624 * 4 3 2 31 31 H 0.96997 * 120.00631 * 4.65308 * 10 8 7 32 32 H 1.08998 * 109.47477 * 300.00460 * 11 10 8 33 33 H 1.08999 * 109.46989 * 60.00746 * 11 10 8 34 34 H 1.09005 * 109.47137 * 299.99998 * 12 11 10 35 35 H 1.08999 * 109.46864 * 60.00471 * 12 11 10 36 36 H 1.08999 * 109.46120 * 54.99861 * 13 12 11 37 37 H 1.08994 * 109.50011 * 298.57174 * 14 13 12 38 38 H 1.09008 * 109.49643 * 58.66569 * 14 13 12 39 39 H 1.09003 * 109.59635 * 294.87092 * 15 14 13 40 40 H 1.08998 * 109.69770 * 174.50887 * 15 14 13 41 41 H 0.97003 * 120.00536 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.59104 * 293.82350 * 25 16 15 43 43 H 1.09000 * 109.70583 * 173.46850 * 25 16 15 44 44 H 1.08998 * 109.49530 * 301.33230 * 26 13 12 45 45 H 1.09004 * 109.49699 * 61.43653 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4735 0.7287 0.0058 5 6 3.5630 -0.6665 0.0003 6 17 5.0079 -1.6288 0.0008 7 6 2.2531 -1.1176 0.0005 8 6 1.8010 -2.5166 0.0017 9 8 1.6420 -3.1053 -1.0509 10 7 1.5628 -3.1469 1.1689 11 6 1.2112 -4.5691 1.1750 12 6 0.9937 -5.0344 2.6162 13 6 0.6272 -6.5199 2.6226 14 6 -0.7212 -6.7153 1.9254 15 6 -1.0684 -8.2072 1.9028 16 7 -1.0192 -8.7247 3.2770 17 6 -2.0888 -9.3943 3.8089 18 1 -3.0922 -9.1421 3.4991 19 6 -1.8833 -10.3971 4.7465 20 7 -0.6682 -10.8516 4.9684 21 14 -3.3313 -11.1017 5.6931 22 1 -3.8951 -12.2562 4.9483 23 1 -2.8751 -11.5521 7.0326 24 1 -4.3750 -10.0572 5.8509 25 6 0.1993 -8.5107 4.0694 26 6 0.5325 -7.0154 4.0674 27 1 -0.3634 0.0869 1.0239 28 1 -0.3633 0.8433 -0.5874 29 1 -0.3633 -0.9302 -0.4368 30 1 4.3040 1.4191 0.0116 31 1 1.6241 -2.6589 2.0049 32 1 0.2957 -4.7195 0.6029 33 1 2.0197 -5.1451 0.7249 34 1 1.9091 -4.8840 3.1886 35 1 0.1851 -4.4583 3.0659 36 1 1.3945 -7.0856 2.0942 37 1 -1.4935 -6.1700 2.4677 38 1 -0.6601 -6.3406 0.9036 39 1 -0.3462 -8.7413 1.2852 40 1 -2.0701 -8.3452 1.4959 41 1 -0.5246 -11.5527 5.6233 42 1 1.0248 -9.0696 3.6284 43 1 0.0359 -8.8473 5.0931 44 1 1.4860 -6.8545 4.5704 45 1 -0.2519 -6.4673 4.5894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270118573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = 47.644173 kcal Electronic energy + Delta-G solvation = -26805.482119 eV Core-core repulsion = 22885.921593 eV Total energy + Delta-G solvation = -3919.560526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.05476 -39.80128 -38.02457 -36.96457 -35.57084 -33.88458 -33.64683 -31.70075 -30.99735 -29.95135 -28.57189 -27.64491 -25.45430 -23.79180 -22.81146 -22.23663 -21.86572 -20.98040 -20.30357 -19.11081 -18.52433 -17.07610 -16.75859 -16.47681 -16.05119 -15.84679 -15.06254 -14.84760 -14.73787 -14.16777 -14.02607 -13.73234 -13.62723 -13.49794 -13.34979 -13.26671 -12.86704 -12.61093 -12.28701 -12.26486 -12.06834 -11.64948 -11.38736 -11.22778 -10.93806 -10.91122 -10.72973 -10.64372 -10.44323 -10.18355 -10.15890 -9.88548 -9.77019 -9.51054 -9.44922 -9.29591 -9.20043 -8.47478 -6.59290 -5.77512 -3.24975 1.01150 1.33814 1.89984 2.01134 2.35434 2.80411 3.36374 3.43013 3.44655 4.00208 4.11412 4.48956 4.51242 4.54416 4.79756 4.84612 4.85875 4.91481 4.97971 5.23074 5.38297 5.43190 5.55850 5.67308 5.69989 5.72129 5.92406 5.97529 6.03374 6.07763 6.16044 6.23626 6.37387 6.54098 6.63840 6.71169 6.82819 6.86649 7.01702 7.03408 7.40931 7.40988 7.68254 7.71012 7.79522 8.49295 9.24094 9.86041 10.44494 11.30489 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.001991 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.949914 B =14063.275086 C =14587.946595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.265 5.265 3 N -0.271 5.271 4 C 0.025 3.975 5 C -0.116 4.116 6 Cl -0.016 7.016 7 C -0.011 4.011 8 C 0.588 3.412 9 O -0.511 6.511 10 N -0.710 5.710 11 C 0.115 3.885 12 C -0.125 4.125 13 C -0.075 4.075 14 C -0.130 4.130 15 C 0.144 3.856 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.063 0.937 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.171 3.829 26 C -0.134 4.134 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.196 0.804 31 H 0.403 0.597 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.016 0.984 40 H 0.051 0.949 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 23.965 -7.483 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.053 5.053 3 N -0.101 5.101 4 C -0.153 4.153 5 C -0.154 4.154 6 Cl 0.012 6.988 7 C -0.141 4.141 8 C 0.369 3.631 9 O -0.385 6.385 10 N -0.361 5.361 11 C -0.007 4.007 12 C -0.163 4.163 13 C -0.094 4.094 14 C -0.169 4.169 15 C 0.018 3.982 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.080 0.920 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.045 3.955 26 C -0.174 4.174 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.213 0.787 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.453 24.184 -8.138 26.320 hybrid contribution 0.095 -0.889 0.915 1.279 sum 6.549 23.296 -7.223 25.254 Atomic orbital electron populations 1.22338 0.71917 1.06078 1.05218 1.45530 1.07782 1.01418 1.50572 1.73267 1.03334 1.13214 1.20315 1.23553 0.93923 0.92646 1.05224 1.21270 0.87358 0.92628 1.14113 1.98374 1.32980 1.70215 1.97229 1.21294 0.90928 0.89746 1.12181 1.16841 0.77951 0.83647 0.84678 1.90901 1.49955 1.66470 1.31130 1.46073 1.69432 1.12462 1.08136 1.21704 1.01583 0.78487 0.98940 1.21927 1.01856 0.98391 0.94153 1.20979 0.97747 0.92463 0.98197 1.22125 0.96458 0.99860 0.98448 1.20903 0.98568 0.90860 0.87886 1.44014 1.14961 1.64427 1.08195 1.19163 0.86524 1.11420 1.20977 0.91958 1.25164 0.96400 0.96473 1.01572 1.69976 1.19571 1.29333 1.36125 0.86284 0.82024 0.79066 0.79288 1.21363 1.21595 1.20518 1.20768 0.87667 0.88594 0.98427 1.22234 0.99649 1.01327 0.94156 0.88864 0.87743 0.88358 0.78675 0.76229 0.90412 0.90904 0.91541 0.91483 0.91577 0.92465 0.93141 0.96584 0.93003 0.93641 0.96570 0.89477 0.93452 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.22 59.85 0.67 1.11 16 2 N -0.26 -2.36 3.75 -63.85 -0.24 -2.59 16 3 N -0.27 -2.56 11.89 30.61 0.36 -2.19 16 4 C 0.02 0.21 12.04 -17.38 -0.21 0.00 16 5 C -0.12 -1.16 6.89 -38.88 -0.27 -1.43 16 6 Cl -0.02 -0.16 29.24 -51.86 -1.52 -1.68 16 7 C -0.01 -0.11 6.72 -82.00 -0.55 -0.66 16 8 C 0.59 6.80 6.92 -12.70 -0.09 6.72 16 9 O -0.51 -7.82 17.11 5.24 0.09 -7.73 16 10 N -0.71 -6.77 5.55 -61.51 -0.34 -7.12 16 11 C 0.12 1.26 5.43 -4.04 -0.02 1.23 16 12 C -0.13 -1.40 4.80 -26.73 -0.13 -1.53 16 13 C -0.07 -1.13 2.15 -90.57 -0.19 -1.32 16 14 C -0.13 -2.11 5.14 -26.61 -0.14 -2.25 16 15 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 16 N -0.59 -14.70 2.99 -172.32 -0.51 -15.21 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 18 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 19 C 0.00 0.06 5.05 -17.43 -0.09 -0.02 16 20 N -0.91 -26.15 11.05 55.49 0.61 -25.54 16 21 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.17 4.00 5.25 -3.71 -0.02 3.98 16 26 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.40 2.95 8.46 -40.82 -0.35 2.60 16 32 H 0.08 0.91 6.53 -51.93 -0.34 0.57 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.71 6.50 -51.92 -0.34 0.38 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.30 6.11 -51.93 -0.32 1.98 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -32.97 382.51 -8.92 -41.89 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.77 Total: -1.37 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.34 Total: -0.74 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.12 Total: -52.65 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.97 -8.92 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270118573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.536 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds