Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28433 * 125.18248 * 2 1 4 4 C 1.30847 * 110.98127 * 179.72909 * 3 2 1 5 5 C 1.39811 * 107.86919 * 0.41620 * 4 3 2 6 6 Cl 1.73599 * 127.33298 * 179.85799 * 5 4 3 7 7 C 1.36745 * 125.18917 * 179.97438 * 2 1 3 8 8 C 1.47030 * 126.90315 * 359.97438 * 7 2 1 9 9 O 1.21642 * 119.99936 * 91.62562 * 8 7 2 10 10 N 1.34772 * 119.99862 * 271.61916 * 8 7 2 11 11 C 1.46505 * 119.99722 * 184.64869 * 10 8 7 12 12 C 1.53002 * 109.46876 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46777 * 180.02562 * 12 11 10 14 14 C 1.53043 * 109.45837 * 295.02421 * 13 12 11 15 15 C 1.53191 * 109.31138 * 178.60331 * 14 13 12 16 16 N 1.46921 * 108.76351 * 54.65714 * 15 14 13 17 17 C 1.36941 * 120.62662 * 126.40810 * 16 15 14 18 18 H 1.07998 * 120.00084 * 328.64059 * 17 16 15 19 19 C 1.38809 * 119.99853 * 148.64945 * 17 16 15 20 20 N 1.31619 * 120.00301 * 349.20412 * 19 17 16 21 21 Si 1.86796 * 120.00127 * 169.20867 * 19 17 16 22 22 H 1.48506 * 109.47405 * 89.99854 * 21 19 17 23 23 H 1.48503 * 109.47433 * 209.99753 * 21 19 17 24 24 H 1.48504 * 109.47351 * 329.99986 * 21 19 17 25 25 C 1.46920 * 118.74100 * 306.38059 * 16 15 14 26 26 C 1.53041 * 109.45668 * 174.97397 * 13 12 11 27 27 H 1.08994 * 109.47540 * 274.85288 * 1 2 3 28 28 H 1.09002 * 109.46810 * 34.85797 * 1 2 3 29 29 H 1.08998 * 109.46721 * 154.84900 * 1 2 3 30 30 H 1.07996 * 126.06113 * 180.29624 * 4 3 2 31 31 H 0.96997 * 120.00631 * 4.65308 * 10 8 7 32 32 H 1.08998 * 109.47477 * 300.00460 * 11 10 8 33 33 H 1.08999 * 109.46989 * 60.00746 * 11 10 8 34 34 H 1.09005 * 109.47137 * 299.99998 * 12 11 10 35 35 H 1.08999 * 109.46864 * 60.00471 * 12 11 10 36 36 H 1.08999 * 109.46120 * 54.99861 * 13 12 11 37 37 H 1.08994 * 109.50011 * 298.57174 * 14 13 12 38 38 H 1.09008 * 109.49643 * 58.66569 * 14 13 12 39 39 H 1.09003 * 109.59635 * 294.87092 * 15 14 13 40 40 H 1.08998 * 109.69770 * 174.50887 * 15 14 13 41 41 H 0.97003 * 120.00536 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.59104 * 293.82350 * 25 16 15 43 43 H 1.09000 * 109.70583 * 173.46850 * 25 16 15 44 44 H 1.08998 * 109.49530 * 301.33230 * 26 13 12 45 45 H 1.09004 * 109.49699 * 61.43653 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0497 0.0000 4 6 3.4735 0.7287 0.0058 5 6 3.5630 -0.6665 0.0003 6 17 5.0079 -1.6288 0.0008 7 6 2.2531 -1.1176 0.0005 8 6 1.8010 -2.5166 0.0017 9 8 1.6420 -3.1053 -1.0509 10 7 1.5628 -3.1469 1.1689 11 6 1.2112 -4.5691 1.1750 12 6 0.9937 -5.0344 2.6162 13 6 0.6272 -6.5199 2.6226 14 6 -0.7212 -6.7153 1.9254 15 6 -1.0684 -8.2072 1.9028 16 7 -1.0192 -8.7247 3.2770 17 6 -2.0888 -9.3943 3.8089 18 1 -3.0922 -9.1421 3.4991 19 6 -1.8833 -10.3971 4.7465 20 7 -0.6682 -10.8516 4.9684 21 14 -3.3313 -11.1017 5.6931 22 1 -3.8951 -12.2562 4.9483 23 1 -2.8751 -11.5521 7.0326 24 1 -4.3750 -10.0572 5.8509 25 6 0.1993 -8.5107 4.0694 26 6 0.5325 -7.0154 4.0674 27 1 -0.3634 0.0869 1.0239 28 1 -0.3633 0.8433 -0.5874 29 1 -0.3633 -0.9302 -0.4368 30 1 4.3040 1.4191 0.0116 31 1 1.6241 -2.6589 2.0049 32 1 0.2957 -4.7195 0.6029 33 1 2.0197 -5.1451 0.7249 34 1 1.9091 -4.8840 3.1886 35 1 0.1851 -4.4583 3.0659 36 1 1.3945 -7.0856 2.0942 37 1 -1.4935 -6.1700 2.4677 38 1 -0.6601 -6.3406 0.9036 39 1 -0.3462 -8.7413 1.2852 40 1 -2.0701 -8.3452 1.4959 41 1 -0.5246 -11.5527 5.6233 42 1 1.0248 -9.0696 3.6284 43 1 0.0359 -8.8473 5.0931 44 1 1.4860 -6.8545 4.5704 45 1 -0.2519 -6.4673 4.5894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270118573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = 26.415083 kcal Electronic energy + Delta-G solvation = -26806.402681 eV Core-core repulsion = 22885.921593 eV Total energy + Delta-G solvation = -3920.481088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.72197 -40.72662 -39.47651 -37.69237 -36.79061 -35.15931 -34.43027 -33.15695 -32.12726 -31.49759 -29.93499 -28.17095 -27.00799 -25.09859 -24.03298 -23.34399 -22.86105 -22.20398 -21.23186 -20.59301 -19.28057 -18.69465 -17.78578 -17.18727 -16.92326 -16.81956 -16.68124 -15.91636 -15.67575 -15.41250 -15.26222 -15.10847 -14.86886 -14.65788 -14.32675 -14.11559 -13.95737 -13.84203 -13.67599 -13.03372 -12.94143 -12.91287 -12.83294 -12.80410 -12.55060 -12.28368 -12.16809 -11.92966 -11.80262 -11.66915 -11.62458 -11.39801 -11.00390 -10.97148 -10.53639 -10.43214 -10.26678 -9.89523 -8.59638 -7.85263 -5.36212 0.29235 0.66217 1.08801 1.35570 1.46605 1.46830 1.56762 1.61473 2.06636 2.51123 3.29506 3.35585 3.46108 3.75466 3.81934 3.89942 3.95054 4.13279 4.22534 4.24438 4.29949 4.34180 4.43423 4.53176 4.61283 4.66114 4.76217 4.79636 4.91703 4.99855 5.05827 5.07322 5.12454 5.25303 5.28998 5.38660 5.43705 5.47808 5.49790 5.59205 5.69084 5.84838 6.23190 6.43313 6.75273 6.86806 7.18161 7.89245 8.41441 9.20009 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.001991 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.949914 B =14063.275086 C =14587.946595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.261 5.261 3 N -0.280 5.280 4 C 0.026 3.974 5 C -0.127 4.127 6 Cl -0.021 7.021 7 C -0.025 4.025 8 C 0.594 3.406 9 O -0.554 6.554 10 N -0.694 5.694 11 C 0.121 3.879 12 C -0.109 4.109 13 C -0.070 4.070 14 C -0.117 4.117 15 C 0.137 3.863 16 N -0.612 5.612 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.175 3.825 26 C -0.121 4.121 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.223 0.777 31 H 0.417 0.583 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.007 0.993 40 H 0.048 0.952 41 H 0.249 0.751 42 H -0.010 1.010 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 26.510 -7.321 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.050 5.050 3 N -0.111 5.111 4 C -0.151 4.151 5 C -0.165 4.165 6 Cl 0.008 6.992 7 C -0.156 4.156 8 C 0.376 3.624 9 O -0.431 6.431 10 N -0.345 5.345 11 C -0.002 4.002 12 C -0.146 4.146 13 C -0.089 4.089 14 C -0.156 4.156 15 C 0.011 3.989 16 N -0.336 5.336 17 C -0.392 4.392 18 H 0.081 0.919 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.797 3.203 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.049 3.951 26 C -0.160 4.160 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.239 0.761 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.008 0.992 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.052 26.775 -7.963 28.582 hybrid contribution 0.212 -1.691 0.816 1.890 sum 6.264 25.083 -7.148 26.823 Atomic orbital electron populations 1.22659 0.70131 1.06661 1.06972 1.45859 1.08787 1.00725 1.49601 1.73278 1.03782 1.13396 1.20681 1.24008 0.94420 0.92486 1.04202 1.21456 0.87168 0.93285 1.14640 1.98369 1.33175 1.70405 1.97268 1.21172 0.91483 0.89566 1.13413 1.16935 0.77134 0.83963 0.84351 1.90882 1.52023 1.67521 1.32636 1.45890 1.68307 1.11946 1.08356 1.21537 1.01064 0.79015 0.98545 1.21711 1.03180 0.95186 0.94561 1.20882 0.96968 0.95279 0.95818 1.21977 0.97064 0.96171 1.00347 1.21090 0.98313 0.93733 0.85714 1.44306 1.14660 1.64677 1.09985 1.19500 0.87423 1.11372 1.20914 0.91878 1.25934 0.98830 0.97168 1.02844 1.70151 1.21484 1.29939 1.36801 0.85257 0.79169 0.78339 0.77556 1.21252 1.21832 1.19355 1.20607 0.86465 0.92129 0.95896 1.22021 1.00562 0.96886 0.96503 0.86663 0.86280 0.88562 0.76077 0.74588 0.90890 0.91860 0.89868 0.89968 0.92236 0.92320 0.90451 0.97468 0.93315 0.94157 0.99202 0.93080 0.91341 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.22 127.77 1.43 2.04 16 2 N -0.26 -4.12 3.75 -355.92 -1.34 -5.46 16 3 N -0.28 -4.71 11.89 -57.06 -0.68 -5.38 16 4 C 0.03 0.39 12.04 85.22 1.03 1.42 16 5 C -0.13 -2.35 6.89 22.72 0.16 -2.20 16 6 Cl -0.02 -0.38 29.24 -2.72 -0.08 -0.46 16 7 C -0.03 -0.48 6.72 40.76 0.27 -0.21 16 8 C 0.59 12.84 6.92 86.55 0.60 13.44 16 9 O -0.55 -16.54 17.11 -4.16 -0.07 -16.61 16 10 N -0.69 -11.51 5.55 -466.75 -2.59 -14.10 16 11 C 0.12 2.33 5.43 86.38 0.47 2.80 16 12 C -0.11 -2.05 4.80 30.60 0.15 -1.90 16 13 C -0.07 -1.97 2.15 -10.76 -0.02 -2.00 16 14 C -0.12 -3.57 5.14 30.67 0.16 -3.42 16 15 C 0.14 5.64 6.52 86.36 0.56 6.20 16 16 N -0.61 -30.82 2.99 -699.11 -2.09 -32.91 16 17 C -0.26 -14.47 9.58 84.03 0.81 -13.67 16 18 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 19 C -0.05 -2.96 5.05 84.86 0.43 -2.53 16 20 N -0.94 -55.86 11.05 21.65 0.24 -55.62 16 21 Si 0.97 44.89 29.57 68.60 2.03 46.92 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.17 8.35 5.25 86.36 0.45 8.80 16 26 C -0.12 -4.16 5.36 30.67 0.16 -3.99 16 27 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.42 4.75 8.46 -92.71 -0.78 3.97 16 32 H 0.07 1.52 6.53 -2.39 -0.02 1.50 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.98 6.50 -2.38 -0.02 1.97 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.05 2.79 6.11 -2.39 -0.01 2.78 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -73.36 382.51 2.30 -71.06 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.22 Total: 7.78 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.65 Total: 4.80 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -6.45 Total: -113.47 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.07 Total: -16.61 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -73.36 2.30 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270118573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.474 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds