Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34601 * 126.49217 * 2 1 4 4 Cl 1.73605 * 125.43753 * 359.97438 * 3 2 1 5 5 N 1.31028 * 109.13020 * 180.27195 * 3 2 1 6 6 C 1.33299 * 109.70028 * 359.74883 * 5 3 2 7 7 C 1.36670 * 107.83459 * 0.02562 * 6 5 3 8 8 C 1.46659 * 126.84486 * 179.97438 * 7 6 5 9 9 O 1.21701 * 119.99897 * 354.01974 * 8 7 6 10 10 N 1.34778 * 120.00550 * 174.02438 * 8 7 6 11 11 C 1.46494 * 120.00429 * 183.47138 * 10 8 7 12 12 H 1.09003 * 109.47172 * 331.77410 * 11 10 8 13 13 C 1.52993 * 109.47400 * 211.77128 * 11 10 8 14 14 N 1.46505 * 109.46985 * 54.99871 * 13 11 10 15 15 C 1.36933 * 119.99760 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00556 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00079 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99587 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00492 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47020 * 89.99416 * 19 17 15 21 21 H 1.48496 * 109.47186 * 210.00181 * 19 17 15 22 22 H 1.48505 * 109.46882 * 330.00112 * 19 17 15 23 23 C 1.53007 * 109.46898 * 91.76965 * 11 10 8 24 24 C 1.54259 * 110.03210 * 51.25777 * 23 11 10 25 25 C 1.54889 * 104.19833 * 217.10414 * 24 23 11 26 26 C 1.54894 * 102.74624 * 37.93576 * 25 24 23 27 27 C 1.53872 * 110.03390 * 294.08515 * 23 11 10 28 28 H 1.09002 * 109.47582 * 263.17253 * 1 2 3 29 29 H 1.09007 * 109.46944 * 23.16928 * 1 2 3 30 30 H 1.09006 * 109.47188 * 143.16922 * 1 2 3 31 31 H 1.08001 * 126.08179 * 179.97438 * 6 5 3 32 32 H 0.97003 * 119.99299 * 3.46800 * 10 8 7 33 33 H 1.08997 * 109.47323 * 174.99991 * 13 11 10 34 34 H 1.09003 * 109.47534 * 295.00295 * 13 11 10 35 35 H 0.96998 * 120.00119 * 0.02562 * 14 13 11 36 36 H 0.97000 * 119.99919 * 180.02562 * 18 17 15 37 37 H 1.08998 * 110.01127 * 172.69252 * 23 11 10 38 38 H 1.09004 * 110.48949 * 335.77944 * 24 23 11 39 39 H 1.08998 * 110.48943 * 98.42298 * 24 23 11 40 40 H 1.09004 * 110.75527 * 279.62984 * 25 24 23 41 41 H 1.08998 * 110.92071 * 156.32612 * 25 24 23 42 42 H 1.08998 * 110.48627 * 203.38096 * 26 25 24 43 43 H 1.09001 * 110.59635 * 80.79710 * 26 25 24 44 44 H 1.08998 * 110.03362 * 238.57219 * 27 23 11 45 45 H 1.09001 * 110.03267 * 0.02562 * 27 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0821 0.0000 4 17 1.7270 2.7325 -0.0006 5 7 3.5160 0.6911 -0.0059 6 6 3.5704 -0.6408 -0.0043 7 6 2.2876 -1.1121 0.0023 8 6 1.8669 -2.5170 0.0056 9 8 2.6959 -3.4007 -0.1074 10 7 0.5621 -2.8295 0.1337 11 6 0.1494 -4.2329 0.2135 12 1 0.8679 -4.8539 -0.3214 13 6 -1.2345 -4.3943 -0.4187 14 7 -1.2108 -3.8692 -1.7862 15 6 -2.3444 -3.9063 -2.5535 16 1 -3.2558 -4.3230 -2.1508 17 6 -2.3219 -3.4093 -3.8494 18 7 -1.2108 -2.9028 -4.3408 19 14 -3.8680 -3.4605 -4.8965 20 1 -4.6436 -2.2102 -4.6954 21 1 -3.4926 -3.5855 -6.3277 22 1 -4.6970 -4.6266 -4.4984 23 6 0.0937 -4.6655 1.6801 24 6 -0.7486 -3.6626 2.4952 25 6 -0.0191 -3.5738 3.8587 26 6 1.4742 -3.6371 3.4521 27 6 1.5070 -4.6493 2.2885 28 1 -0.3634 -0.1222 1.0204 29 1 -0.3633 0.9449 -0.4044 30 1 -0.3634 -0.8226 -0.6161 31 1 4.4685 -1.2407 -0.0085 32 1 -0.1037 -2.1252 0.1731 33 1 -1.5035 -5.4503 -0.4396 34 1 -1.9690 -3.8438 0.1692 35 1 -0.3922 -3.4953 -2.1481 36 1 -1.1952 -2.5551 -5.2462 37 1 -0.3351 -5.6645 1.7583 38 1 -0.7618 -2.6888 2.0056 39 1 -1.7634 -4.0370 2.6292 40 1 -0.2827 -4.4197 4.4936 41 1 -0.2435 -2.6321 4.3596 42 1 2.0814 -3.9928 4.2844 43 1 1.8223 -2.6598 3.1175 44 1 1.7637 -5.6403 2.6627 45 1 2.2325 -4.3328 1.5391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270412350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = 33.137058 kcal Electronic energy + Delta-G solvation = -28852.970331 eV Core-core repulsion = 24932.780729 eV Total energy + Delta-G solvation = -3920.189601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.39752 -40.02990 -37.75155 -37.17212 -35.58144 -34.65610 -33.42194 -31.43875 -30.17478 -29.33848 -28.63498 -27.44511 -26.37773 -23.92250 -22.93141 -21.68409 -21.47440 -20.64213 -20.17860 -19.24405 -17.94247 -17.30940 -16.63277 -16.44469 -16.03353 -15.82413 -15.03519 -14.79765 -14.62301 -14.58488 -13.99412 -13.74003 -13.47133 -13.43382 -13.34683 -13.12027 -12.95161 -12.54535 -12.16886 -11.96410 -11.81778 -11.71190 -11.30757 -11.06216 -10.97865 -10.91903 -10.78276 -10.61890 -10.58085 -10.40210 -10.32602 -10.10302 -9.98816 -9.90145 -9.82697 -9.01299 -8.81318 -8.56922 -7.06509 -5.87183 -3.17925 1.04821 1.12880 2.53004 2.58757 3.25223 3.35030 3.36733 3.41446 3.43320 4.39260 4.45447 4.47684 4.64330 4.70891 4.80045 4.83919 4.93064 5.22460 5.25979 5.36417 5.41762 5.46610 5.53182 5.62768 5.64247 5.68484 5.70167 5.80700 5.91087 5.96482 5.99956 6.08574 6.23797 6.27932 6.30028 6.35877 6.38457 6.49327 6.56103 6.60685 6.80136 7.47530 7.59181 7.65744 8.27501 8.30161 9.42076 9.96995 10.32245 11.34641 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007799 B = 0.004877 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3589.141023 B = 5740.010140 C = 8095.763418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.425 5.425 3 C 0.261 3.739 4 Cl 0.038 6.962 5 N -0.471 5.471 6 C 0.072 3.928 7 C -0.063 4.063 8 C 0.600 3.400 9 O -0.522 6.522 10 N -0.706 5.706 11 C 0.140 3.860 12 H 0.096 0.904 13 C 0.143 3.857 14 N -0.732 5.732 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.140 4.140 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.193 0.807 32 H 0.397 0.603 33 H 0.035 0.965 34 H 0.025 0.975 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 5.687 15.847 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.112 5.112 3 C -0.025 4.025 4 Cl 0.065 6.935 5 N -0.193 5.193 6 C -0.082 4.082 7 C -0.178 4.178 8 C 0.386 3.614 9 O -0.400 6.400 10 N -0.360 5.360 11 C 0.036 3.964 12 H 0.114 0.886 13 C 0.015 3.985 14 N -0.377 5.377 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.119 4.119 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.177 4.177 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.210 0.790 32 H 0.237 0.763 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.443 5.660 15.694 17.265 hybrid contribution -1.851 0.196 -0.858 2.049 sum 2.592 5.856 14.837 16.160 Atomic orbital electron populations 1.22590 0.75176 1.07134 1.04796 1.45255 1.08149 1.05149 1.52629 1.23192 0.86762 0.84318 1.08232 1.98425 1.88690 1.09277 1.97102 1.70120 1.15979 1.12672 1.20529 1.22595 0.95893 0.89180 1.00569 1.21364 0.91662 0.87298 1.17523 1.16622 0.83122 0.85252 0.76454 1.90781 1.52040 1.46843 1.50288 1.46286 1.06922 1.09694 1.73146 1.21434 0.98344 0.81581 0.95090 0.88557 1.21001 0.92206 0.97806 0.87492 1.42361 1.12316 1.73480 1.09506 1.19196 0.89969 1.33954 0.94472 0.91124 1.24754 0.97120 1.01435 0.97345 1.69667 1.25594 1.46019 1.16472 0.86207 0.82425 0.77641 0.79981 1.21740 1.21733 1.20715 1.22159 0.96047 0.99519 0.94156 1.22374 0.98559 0.99315 0.95080 1.22483 0.95542 1.01027 0.97073 1.22284 0.96137 0.99388 0.97876 1.22542 0.97658 0.98961 0.98567 0.89080 0.87804 0.87133 0.78992 0.76282 0.94739 0.95726 0.78092 0.93402 0.90059 0.92021 0.91605 0.91758 0.92240 0.92338 0.92438 0.92415 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.55 59.85 0.57 1.05 16 2 N -0.43 -5.60 3.18 -118.35 -0.38 -5.97 16 3 C 0.26 3.55 8.48 -90.33 -0.77 2.78 16 4 Cl 0.04 0.41 28.60 -51.86 -1.48 -1.08 16 5 N -0.47 -7.06 11.21 -11.48 -0.13 -7.19 16 6 C 0.07 1.04 11.66 -17.48 -0.20 0.84 16 7 C -0.06 -0.93 6.91 -82.10 -0.57 -1.50 16 8 C 0.60 9.59 7.00 -12.86 -0.09 9.50 16 9 O -0.52 -9.51 14.03 5.19 0.07 -9.44 16 10 N -0.71 -10.42 3.34 -55.12 -0.18 -10.60 16 11 C 0.14 2.15 2.05 -67.93 -0.14 2.01 16 12 H 0.10 1.71 7.32 -51.93 -0.38 1.33 16 13 C 0.14 2.56 5.78 -4.04 -0.02 2.54 16 14 N -0.73 -17.02 5.43 -59.91 -0.33 -17.34 16 15 C -0.24 -6.41 9.99 -15.06 -0.15 -6.56 16 16 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 19 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.10 -1.24 2.76 -89.50 -0.25 -1.48 16 24 C -0.12 -1.28 5.38 -25.08 -0.13 -1.41 16 25 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 26 C -0.12 -1.33 6.83 -25.07 -0.17 -1.51 16 27 C -0.14 -1.77 6.11 -25.62 -0.16 -1.92 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.95 7.58 -51.92 -0.39 0.55 16 30 H 0.11 1.41 6.08 -51.93 -0.32 1.09 16 31 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.40 5.44 3.76 -40.82 -0.15 5.28 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.42 7.41 -51.93 -0.38 0.04 16 35 H 0.39 9.72 7.33 -40.82 -0.30 9.43 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.69 6.33 -51.93 -0.33 0.36 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.43 4.26 -51.93 -0.22 1.21 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -30.79 372.18 -9.71 -40.50 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.25 Total: 12.79 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.34 Total: 2.55 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -0.29 Total: -67.44 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.48 Total: -1.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.79 -9.71 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270412350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.641 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds