Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34601 * 126.49217 * 2 1 4 4 Cl 1.73605 * 125.43753 * 359.97438 * 3 2 1 5 5 N 1.31028 * 109.13020 * 180.27195 * 3 2 1 6 6 C 1.33299 * 109.70028 * 359.74883 * 5 3 2 7 7 C 1.36670 * 107.83459 * 0.02562 * 6 5 3 8 8 C 1.46659 * 126.84486 * 179.97438 * 7 6 5 9 9 O 1.21701 * 119.99897 * 354.01974 * 8 7 6 10 10 N 1.34778 * 120.00550 * 174.02438 * 8 7 6 11 11 C 1.46494 * 120.00429 * 183.47138 * 10 8 7 12 12 H 1.09003 * 109.47172 * 331.77410 * 11 10 8 13 13 C 1.52993 * 109.47400 * 211.77128 * 11 10 8 14 14 N 1.46505 * 109.46985 * 54.99871 * 13 11 10 15 15 C 1.36933 * 119.99760 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00556 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00079 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99587 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00492 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47020 * 89.99416 * 19 17 15 21 21 H 1.48496 * 109.47186 * 210.00181 * 19 17 15 22 22 H 1.48505 * 109.46882 * 330.00112 * 19 17 15 23 23 C 1.53007 * 109.46898 * 91.76965 * 11 10 8 24 24 C 1.54259 * 110.03210 * 51.25777 * 23 11 10 25 25 C 1.54889 * 104.19833 * 217.10414 * 24 23 11 26 26 C 1.54894 * 102.74624 * 37.93576 * 25 24 23 27 27 C 1.53872 * 110.03390 * 294.08515 * 23 11 10 28 28 H 1.09002 * 109.47582 * 263.17253 * 1 2 3 29 29 H 1.09007 * 109.46944 * 23.16928 * 1 2 3 30 30 H 1.09006 * 109.47188 * 143.16922 * 1 2 3 31 31 H 1.08001 * 126.08179 * 179.97438 * 6 5 3 32 32 H 0.97003 * 119.99299 * 3.46800 * 10 8 7 33 33 H 1.08997 * 109.47323 * 174.99991 * 13 11 10 34 34 H 1.09003 * 109.47534 * 295.00295 * 13 11 10 35 35 H 0.96998 * 120.00119 * 0.02562 * 14 13 11 36 36 H 0.97000 * 119.99919 * 180.02562 * 18 17 15 37 37 H 1.08998 * 110.01127 * 172.69252 * 23 11 10 38 38 H 1.09004 * 110.48949 * 335.77944 * 24 23 11 39 39 H 1.08998 * 110.48943 * 98.42298 * 24 23 11 40 40 H 1.09004 * 110.75527 * 279.62984 * 25 24 23 41 41 H 1.08998 * 110.92071 * 156.32612 * 25 24 23 42 42 H 1.08998 * 110.48627 * 203.38096 * 26 25 24 43 43 H 1.09001 * 110.59635 * 80.79710 * 26 25 24 44 44 H 1.08998 * 110.03362 * 238.57219 * 27 23 11 45 45 H 1.09001 * 110.03267 * 0.02562 * 27 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0821 0.0000 4 17 1.7270 2.7325 -0.0006 5 7 3.5160 0.6911 -0.0059 6 6 3.5704 -0.6408 -0.0043 7 6 2.2876 -1.1121 0.0023 8 6 1.8669 -2.5170 0.0056 9 8 2.6959 -3.4007 -0.1074 10 7 0.5621 -2.8295 0.1337 11 6 0.1494 -4.2329 0.2135 12 1 0.8679 -4.8539 -0.3214 13 6 -1.2345 -4.3943 -0.4187 14 7 -1.2108 -3.8692 -1.7862 15 6 -2.3444 -3.9063 -2.5535 16 1 -3.2558 -4.3230 -2.1508 17 6 -2.3219 -3.4093 -3.8494 18 7 -1.2108 -2.9028 -4.3408 19 14 -3.8680 -3.4605 -4.8965 20 1 -4.6436 -2.2102 -4.6954 21 1 -3.4926 -3.5855 -6.3277 22 1 -4.6970 -4.6266 -4.4984 23 6 0.0937 -4.6655 1.6801 24 6 -0.7486 -3.6626 2.4952 25 6 -0.0191 -3.5738 3.8587 26 6 1.4742 -3.6371 3.4521 27 6 1.5070 -4.6493 2.2885 28 1 -0.3634 -0.1222 1.0204 29 1 -0.3633 0.9449 -0.4044 30 1 -0.3634 -0.8226 -0.6161 31 1 4.4685 -1.2407 -0.0085 32 1 -0.1037 -2.1252 0.1731 33 1 -1.5035 -5.4503 -0.4396 34 1 -1.9690 -3.8438 0.1692 35 1 -0.3922 -3.4953 -2.1481 36 1 -1.1952 -2.5551 -5.2462 37 1 -0.3351 -5.6645 1.7583 38 1 -0.7618 -2.6888 2.0056 39 1 -1.7634 -4.0370 2.6292 40 1 -0.2827 -4.4197 4.4936 41 1 -0.2435 -2.6321 4.3596 42 1 2.0814 -3.9928 4.2844 43 1 1.8223 -2.6598 3.1175 44 1 1.7637 -5.6403 2.6627 45 1 2.2325 -4.3328 1.5391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270412350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = 15.284964 kcal Electronic energy + Delta-G solvation = -28853.744455 eV Core-core repulsion = 24932.780729 eV Total energy + Delta-G solvation = -3920.963726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.48761 -41.22331 -38.87970 -38.14084 -36.97315 -35.89844 -34.89020 -33.06474 -31.56749 -30.48762 -29.56471 -28.40390 -27.82529 -25.44501 -24.40190 -22.83882 -22.63247 -21.80843 -21.18431 -20.33623 -19.30382 -18.89367 -17.79763 -17.54178 -17.28019 -16.87666 -16.57785 -16.03127 -15.87580 -15.72079 -15.24272 -15.07258 -14.97806 -14.82895 -14.35596 -14.19739 -14.06511 -13.76583 -13.42109 -13.07967 -12.96662 -12.93768 -12.76648 -12.71743 -12.25593 -12.11409 -11.91607 -11.85550 -11.74238 -11.65206 -11.47425 -11.45493 -11.35868 -11.17155 -11.02155 -10.94237 -10.04914 -9.69198 -9.01397 -7.94477 -5.24007 -0.01213 0.03775 1.44888 1.47751 1.49644 1.52955 1.57511 2.05264 2.16133 2.55497 3.29943 3.40451 3.51830 3.58602 3.71997 3.80392 3.86216 4.06294 4.11839 4.16527 4.24906 4.37818 4.42119 4.53832 4.61062 4.64127 4.70489 4.77436 4.87121 4.89631 4.90236 5.08290 5.11843 5.16932 5.20060 5.29307 5.33267 5.47088 5.49813 5.51644 5.55569 5.59600 6.25303 6.31291 6.50336 7.04677 7.33420 8.06613 8.30051 9.28081 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007799 B = 0.004877 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3589.141023 B = 5740.010140 C = 8095.763418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.422 5.422 3 C 0.261 3.739 4 Cl 0.063 6.937 5 N -0.492 5.492 6 C 0.068 3.932 7 C -0.079 4.079 8 C 0.599 3.401 9 O -0.551 6.551 10 N -0.698 5.698 11 C 0.150 3.850 12 H 0.067 0.933 13 C 0.144 3.856 14 N -0.742 5.742 15 C -0.239 4.239 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.270 1.270 23 C -0.093 4.093 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.140 4.140 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.203 0.797 32 H 0.404 0.596 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 6.182 17.737 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.107 5.107 3 C -0.026 4.026 4 Cl 0.091 6.909 5 N -0.214 5.214 6 C -0.086 4.086 7 C -0.195 4.195 8 C 0.386 3.614 9 O -0.431 6.431 10 N -0.353 5.353 11 C 0.045 3.955 12 H 0.085 0.915 13 C 0.018 3.982 14 N -0.385 5.385 15 C -0.371 4.371 16 H 0.098 0.902 17 C -0.263 4.263 18 N -0.619 5.619 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.230 1.230 22 H -0.195 1.195 23 C -0.113 4.113 24 C -0.152 4.152 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.178 4.178 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.219 0.781 32 H 0.245 0.755 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.204 0.796 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.646 6.145 17.637 18.864 hybrid contribution -1.301 0.053 -1.397 1.909 sum 1.346 6.198 16.240 17.435 Atomic orbital electron populations 1.22796 0.73739 1.07152 1.06411 1.45334 1.08939 1.04525 1.51941 1.23489 0.86627 0.85437 1.07065 1.98434 1.88362 1.07180 1.96926 1.70122 1.16961 1.12740 1.21539 1.22852 0.96354 0.89391 1.00039 1.21213 0.92174 0.87211 1.18941 1.16743 0.83123 0.85532 0.75981 1.90763 1.52796 1.47796 1.51703 1.46200 1.06765 1.09631 1.72654 1.21254 0.95966 0.81606 0.96674 0.91492 1.21155 0.94166 0.97672 0.85239 1.42532 1.11059 1.73575 1.11346 1.19602 0.90890 1.31960 0.94608 0.90187 1.25489 0.99691 1.02319 0.98839 1.69831 1.27663 1.48038 1.16336 0.85211 0.79381 0.78014 0.77550 1.21148 1.23041 1.19511 1.22120 0.96629 1.00503 0.92025 1.22391 0.98913 0.98594 0.95351 1.22451 0.94009 1.02246 0.96575 1.22250 0.97470 0.98204 0.97466 1.22491 0.96958 0.99776 0.98560 0.86039 0.86125 0.89285 0.78069 0.75496 0.94542 0.93675 0.79611 0.94271 0.89104 0.92247 0.90437 0.90569 0.90989 0.91334 0.93654 0.91727 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.55 127.77 1.22 2.01 16 2 N -0.42 -10.82 3.18 -528.36 -1.68 -12.50 16 3 C 0.26 6.85 8.48 180.25 1.53 8.38 16 4 Cl 0.06 1.27 28.60 -2.72 -0.08 1.19 16 5 N -0.49 -14.59 11.21 -190.25 -2.13 -16.72 16 6 C 0.07 2.00 11.66 84.10 0.98 2.99 16 7 C -0.08 -2.39 6.91 39.95 0.28 -2.11 16 8 C 0.60 19.66 7.00 86.44 0.60 20.27 16 9 O -0.55 -20.96 14.03 -4.35 -0.06 -21.02 16 10 N -0.70 -20.64 3.34 -446.52 -1.49 -22.14 16 11 C 0.15 4.58 2.05 44.99 0.09 4.68 16 12 H 0.07 2.47 7.32 -2.39 -0.02 2.45 16 13 C 0.14 5.03 5.78 86.38 0.50 5.53 16 14 N -0.74 -34.48 5.43 -343.45 -1.87 -36.35 16 15 C -0.24 -12.34 9.99 84.04 0.84 -11.50 16 16 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 19 Si 0.97 44.17 29.55 68.60 2.03 46.19 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C -0.09 -2.20 2.76 -10.07 -0.03 -2.23 16 24 C -0.11 -2.23 5.38 31.67 0.17 -2.06 16 25 C -0.12 -1.97 6.91 31.89 0.22 -1.75 16 26 C -0.12 -2.41 6.83 31.67 0.22 -2.19 16 27 C -0.14 -3.44 6.11 31.32 0.19 -3.25 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.12 1.98 7.58 -2.38 -0.02 1.96 16 30 H 0.09 2.23 6.08 -2.38 -0.01 2.21 16 31 H 0.20 5.28 8.06 -2.91 -0.02 5.25 16 32 H 0.40 10.83 3.76 -92.71 -0.35 10.49 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.43 7.41 -2.39 -0.02 1.41 16 35 H 0.37 19.18 7.33 -92.71 -0.68 18.50 16 36 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.18 6.33 -2.38 -0.02 1.17 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 2.13 4.26 -2.39 -0.01 2.12 16 Total: -1.00 -66.46 372.18 2.29 -64.17 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.01 Total: 38.87 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 7.28 Total: 15.36 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -6.89 Total: -144.76 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: 1.27 SS G_CDS: -0.08 Total: 1.19 kcal Total: -66.46 2.29 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270412350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.454 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds