Wall clock time and date at job start Sat Apr 11 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35285 * 117.00175 * 2 1 4 4 N 1.32812 * 120.58465 * 0.02562 * 3 2 1 5 5 C 1.31794 * 121.04683 * 179.97438 * 4 3 2 6 6 N 1.31799 * 122.29856 * 359.97438 * 5 4 3 7 7 C 1.32801 * 121.04562 * 0.02562 * 6 5 4 8 8 O 1.35292 * 120.59020 * 180.02562 * 7 6 5 9 9 C 1.42895 * 116.99476 * 0.02562 * 8 7 6 10 10 C 1.40631 * 120.59058 * 179.72164 * 3 2 1 11 11 C 1.47218 * 121.02174 * 0.02562 * 10 3 2 12 12 O 1.21630 * 119.99871 * 90.00077 * 11 10 3 13 13 N 1.34777 * 120.00111 * 270.00024 * 11 10 3 14 14 C 1.46503 * 120.00142 * 0.02562 * 13 11 10 15 15 C 1.52992 * 109.47448 * 89.99500 * 14 13 11 16 16 O 1.42902 * 109.47330 * 65.00123 * 15 14 13 17 17 C 1.46502 * 120.00069 * 179.97438 * 13 11 10 18 18 C 1.53005 * 109.46886 * 90.00066 * 17 13 11 19 19 N 1.46502 * 109.46886 * 180.02562 * 18 17 13 20 20 C 1.36935 * 119.99615 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99996 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99767 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99714 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47352 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47023 * 120.00414 * 24 22 20 27 27 H 1.48502 * 109.46860 * 240.00138 * 24 22 20 28 28 H 1.09002 * 109.47220 * 299.99655 * 1 2 3 29 29 H 1.08996 * 109.47672 * 59.99599 * 1 2 3 30 30 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.07999 * 118.85091 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47303 * 299.99612 * 9 8 7 33 33 H 1.08992 * 109.47715 * 59.99928 * 9 8 7 34 34 H 1.09006 * 109.46955 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.46681 * 210.00112 * 14 13 11 36 36 H 1.09004 * 109.46574 * 329.99429 * 14 13 11 37 37 H 1.08998 * 109.47223 * 184.99771 * 15 14 13 38 38 H 1.09006 * 109.47258 * 305.00245 * 15 14 13 39 39 H 0.96696 * 114.00309 * 179.97438 * 16 15 14 40 40 H 1.08996 * 109.47355 * 210.00197 * 17 13 11 41 41 H 1.08998 * 109.47224 * 330.00794 * 17 13 11 42 42 H 1.08996 * 109.47230 * 300.00207 * 18 17 13 43 43 H 1.08998 * 109.46595 * 60.00343 * 18 17 13 44 44 H 0.96991 * 119.99803 * 0.02562 * 19 18 17 45 45 H 0.97003 * 120.00100 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3312 2.3266 0.0005 5 6 1.9201 3.5056 0.0010 6 7 3.2314 3.6379 0.0016 7 6 4.0270 2.5746 0.0011 8 8 5.3720 2.7210 0.0022 9 6 5.8790 4.0570 0.0044 10 6 3.4467 1.2934 0.0059 11 6 4.2829 0.0818 0.0116 12 8 4.6328 -0.4206 -1.0394 13 7 4.6606 -0.4708 1.1814 14 6 4.2386 0.1339 2.4473 15 6 2.9049 -0.4752 2.8840 16 8 3.0861 -1.8635 3.1702 17 6 5.4923 -1.6769 1.1871 18 6 6.9693 -1.2778 1.1924 19 7 7.8010 -2.4839 1.1975 20 6 9.1659 -2.3742 1.2034 21 1 9.6293 -1.3987 1.2038 22 6 9.9540 -3.5170 1.2076 23 7 9.3892 -4.7059 1.2055 24 14 11.8160 -3.3674 1.2149 25 1 12.1974 -1.9322 1.2156 26 1 12.3606 -4.0245 2.4301 27 1 12.3702 -4.0268 0.0052 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.3067 4.3945 0.0010 32 1 5.5281 4.5803 -0.8852 33 1 5.5270 4.5778 0.8947 34 1 6.9687 4.0321 0.0046 35 1 4.9929 -0.0576 3.2106 36 1 4.1209 1.2094 2.3147 37 1 2.5471 0.0362 3.7776 38 1 2.1741 -0.3617 2.0832 39 1 2.2797 -2.3151 3.4542 40 1 5.2718 -2.2661 2.0772 41 1 5.2793 -2.2693 0.2973 42 1 7.1897 -0.6887 0.3023 43 1 7.1823 -0.6854 2.0822 44 1 7.3847 -3.3600 1.1967 45 1 9.9399 -5.5044 1.2082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272322930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:47 Heat of formation + Delta-G solvation = -76.203312 kcal Electronic energy + Delta-G solvation = -31097.076608 eV Core-core repulsion = 26731.436488 eV Total energy + Delta-G solvation = -4365.640120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89880 -39.61629 -39.47002 -38.21273 -37.12739 -35.46654 -34.23108 -33.10183 -32.45593 -31.21645 -29.42135 -28.38776 -27.59799 -27.16431 -25.43430 -23.59640 -23.47665 -23.05296 -21.48012 -19.70877 -19.43820 -18.93259 -17.93868 -17.18844 -17.07671 -16.97516 -16.85023 -16.12031 -15.92577 -15.90521 -15.13451 -14.64343 -14.53524 -14.47946 -14.18634 -14.16325 -13.77245 -13.49162 -13.19849 -13.00796 -12.74555 -12.54255 -12.40671 -12.26031 -12.21547 -11.76706 -11.62656 -11.54707 -11.10679 -10.86306 -10.80248 -10.53612 -10.16863 -10.06396 -10.02080 -9.99101 -9.78746 -9.61509 -9.22057 -8.76739 -8.39674 -6.80860 -5.65695 -2.94010 0.38302 0.76448 2.07749 2.58483 2.94873 3.05622 3.29692 3.50671 3.55660 3.58405 3.60901 3.69606 4.11282 4.28579 4.70147 4.71850 4.74308 4.86137 4.88423 4.96980 5.01498 5.02883 5.08567 5.14970 5.16586 5.29287 5.36349 5.44214 5.65394 5.67369 5.87993 6.05139 6.19958 6.31521 6.35259 6.56827 6.67702 6.72988 6.90063 7.08761 7.49972 7.55354 7.62585 7.80539 8.32406 8.53064 9.63731 10.21784 10.57369 11.57491 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003267 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.976843 B = 8568.049960 C = 9755.288062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.285 6.285 3 C 0.416 3.584 4 N -0.593 5.593 5 C 0.381 3.619 6 N -0.591 5.591 7 C 0.418 3.582 8 O -0.282 6.282 9 C 0.037 3.963 10 C -0.269 4.269 11 C 0.585 3.415 12 O -0.516 6.516 13 N -0.584 5.584 14 C 0.113 3.887 15 C 0.056 3.944 16 O -0.558 6.558 17 C 0.114 3.886 18 C 0.143 3.857 19 N -0.730 5.730 20 C -0.233 4.233 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.209 0.791 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.376 0.624 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.023 0.977 43 H 0.016 0.984 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.108 18.958 2.579 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.187 6.187 3 C 0.231 3.769 4 N -0.328 5.328 5 C 0.094 3.906 6 N -0.326 5.326 7 C 0.233 3.767 8 O -0.184 6.184 9 C -0.058 4.058 10 C -0.278 4.278 11 C 0.369 3.631 12 O -0.391 6.391 13 N -0.316 5.316 14 C -0.011 4.011 15 C -0.023 4.023 16 O -0.362 6.362 17 C -0.008 4.008 18 C 0.015 3.985 19 N -0.374 5.374 20 C -0.364 4.364 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.225 0.775 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.222 0.778 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.040 0.960 43 H 0.034 0.966 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.273 19.134 1.842 29.421 hybrid contribution 0.454 -0.530 0.198 0.725 sum -21.819 18.604 2.039 28.746 Atomic orbital electron populations 1.23074 0.75839 1.03951 1.03022 1.86302 1.23876 1.23170 1.85394 1.19598 0.86995 0.85377 0.84891 1.68202 1.40633 0.98648 1.25271 1.24521 0.86944 0.94070 0.85114 1.68223 1.07200 1.32079 1.25065 1.19688 0.85145 0.87413 0.84449 1.86338 1.14740 1.32234 1.85056 1.23104 0.99898 0.79901 1.02882 1.19577 0.92257 0.94654 1.21346 1.17254 0.79268 0.82410 0.84153 1.90843 1.55057 1.62140 1.31040 1.47643 1.50776 1.28686 1.04507 1.21565 0.96250 0.96355 0.86920 1.22729 0.97710 0.83215 0.98620 1.86592 1.37913 1.21574 1.90166 1.21746 0.90175 0.85005 1.03885 1.20915 0.88583 0.91076 0.97966 1.42214 1.02870 1.02818 1.89517 1.19263 0.82401 0.92639 1.42134 0.91204 1.24738 0.97914 0.95236 1.03278 1.69678 1.33879 0.96581 1.58110 0.86103 0.85800 0.77117 0.77114 1.20612 1.21940 1.21892 0.91638 0.91516 0.87773 0.77510 0.91582 0.91541 0.87531 0.88700 0.90358 0.93242 0.93271 0.77786 0.89279 0.89940 0.95954 0.96577 0.78233 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.41 101.05 1.05 1.31 16 2 O -0.28 -3.33 8.35 -17.55 -0.15 -3.48 16 3 C 0.42 5.09 6.86 -16.23 -0.11 4.98 16 4 N -0.59 -5.81 9.36 -14.36 -0.13 -5.94 16 5 C 0.38 3.13 12.26 -92.15 -1.13 2.00 16 6 N -0.59 -6.10 9.36 -14.36 -0.13 -6.24 16 7 C 0.42 5.46 7.14 -16.22 -0.12 5.34 16 8 O -0.28 -3.81 10.02 -17.57 -0.18 -3.99 16 9 C 0.04 0.33 10.41 101.05 1.05 1.38 16 10 C -0.27 -3.88 3.95 -104.44 -0.41 -4.29 16 11 C 0.58 10.52 6.37 -12.61 -0.08 10.44 16 12 O -0.52 -11.53 16.69 5.25 0.09 -11.44 16 13 N -0.58 -9.77 2.44 -175.03 -0.43 -10.20 16 14 C 0.11 1.45 5.63 -4.04 -0.02 1.43 16 15 C 0.06 0.60 7.39 37.15 0.27 0.87 16 16 O -0.56 -6.62 12.48 -35.23 -0.44 -7.06 16 17 C 0.11 2.24 5.34 -4.04 -0.02 2.22 16 18 C 0.14 3.30 6.58 -4.04 -0.03 3.28 16 19 N -0.73 -20.19 5.60 -59.91 -0.34 -20.52 16 20 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 21 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 22 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -29.50 13.06 55.49 0.72 -28.77 16 24 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 36 H 0.08 0.89 6.57 -51.93 -0.34 0.55 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.53 5.54 -51.93 -0.29 0.24 16 39 H 0.38 2.70 9.12 45.56 0.42 3.12 16 40 H 0.09 1.71 7.11 -51.93 -0.37 1.34 16 41 H 0.08 1.79 7.42 -51.93 -0.39 1.40 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 11.04 7.67 -40.82 -0.31 10.73 16 45 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -39.31 384.96 -5.46 -44.77 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.47 Total: 7.46 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 0.21 Total: 21.26 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -0.31 Total: -71.68 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.67 Total: -25.97 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.31 -5.46 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272322930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.430 kcal (2) G-P(sol) polarization free energy of solvation -39.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds