Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34953 * 125.97285 * 2 1 4 4 C 1.35253 * 107.86253 * 179.72953 * 3 2 1 5 5 C 1.40417 * 107.86174 * 0.43242 * 4 3 2 6 6 N 1.39993 * 125.97742 * 179.82799 * 5 4 3 7 7 C 1.46973 * 110.99815 * 299.84286 * 6 5 4 8 8 C 1.53743 * 108.14476 * 235.99636 * 7 6 5 9 9 F 1.39901 * 112.74607 * 107.46610 * 8 7 6 10 10 C 1.51382 * 108.79163 * 234.20965 * 8 7 6 11 11 O 1.21286 * 124.89565 * 273.72372 * 10 8 7 12 12 N 1.34387 * 110.20831 * 93.83770 * 10 8 7 13 13 C 1.46499 * 124.34576 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46968 * 269.69833 * 13 12 10 15 15 C 1.50703 * 109.47207 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 C 1.46772 * 111.30654 * 359.74860 * 12 10 8 24 24 C 1.54247 * 105.47092 * 17.57147 * 23 12 10 25 25 F 1.39906 * 113.32628 * 95.93794 * 24 23 12 26 26 C 1.47104 * 111.00091 * 178.13266 * 6 5 4 27 27 N 1.31225 * 108.04835 * 359.56556 * 5 4 3 28 28 H 1.08996 * 109.46828 * 270.01976 * 1 2 3 29 29 H 1.09002 * 109.47119 * 30.02040 * 1 2 3 30 30 H 1.09003 * 109.47271 * 150.02280 * 1 2 3 31 31 H 1.08004 * 126.06720 * 0.02562 * 3 2 1 32 32 H 1.07998 * 126.06832 * 180.29459 * 4 3 2 33 33 H 1.09000 * 109.74326 * 116.31056 * 7 6 5 34 34 H 1.09008 * 109.74077 * 355.67410 * 7 6 5 35 35 H 1.08993 * 109.47363 * 149.69795 * 13 12 10 36 36 H 1.09006 * 109.47292 * 29.69317 * 13 12 10 37 37 H 1.09005 * 109.47493 * 59.99941 * 14 13 12 38 38 H 1.08998 * 109.47006 * 299.99905 * 14 13 12 39 39 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 40 40 H 1.09003 * 110.24450 * 136.57353 * 23 12 10 41 41 H 1.08996 * 110.24776 * 258.56793 * 23 12 10 42 42 H 1.09001 * 109.98041 * 21.32421 * 26 6 5 43 43 H 1.08990 * 109.98039 * 260.03293 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0922 0.0000 4 6 3.5433 0.6718 0.0061 5 6 3.5372 -0.7324 -0.0001 6 7 4.6666 -1.5597 -0.0002 7 6 5.4987 -1.3149 -1.1867 8 6 5.6793 -2.6493 -1.9285 9 9 4.9471 -2.7098 -3.1190 10 6 7.1592 -2.9054 -2.1181 11 8 7.8226 -2.4881 -3.0438 12 7 7.6314 -3.6639 -1.1143 13 6 9.0256 -4.0967 -0.9906 14 6 9.2068 -5.4411 -1.6981 15 6 10.6411 -5.8861 -1.5715 16 1 11.3522 -5.2712 -1.0400 17 6 11.0455 -7.0776 -2.1351 18 7 10.1796 -7.8261 -2.7828 19 14 12.8231 -7.6295 -1.9775 20 1 13.5894 -6.6171 -1.2072 21 1 13.4179 -7.7757 -3.3304 22 1 12.8756 -8.9342 -1.2702 23 6 6.5725 -3.9975 -0.1542 24 6 5.2463 -3.7284 -0.8945 25 9 4.6955 -4.8743 -1.4784 26 6 4.2806 -2.9787 0.0371 27 7 2.2878 -1.1336 -0.0001 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.9247 2.1196 0.0004 32 1 4.4190 1.3038 0.0122 33 1 6.4712 -0.9290 -0.8811 34 1 5.0059 -0.5945 -1.8398 35 1 9.2807 -4.2036 0.0636 36 1 9.6786 -3.3540 -1.4490 37 1 8.9517 -5.3343 -2.7525 38 1 8.5538 -6.1838 -1.2398 39 1 9.2564 -7.5397 -2.8643 40 1 6.6391 -5.0474 0.1310 41 1 6.6484 -3.3609 0.7273 42 1 3.2562 -3.0954 -0.3166 43 1 4.3702 -3.3624 1.0532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273564134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = -42.739873 kcal Electronic energy + Delta-G solvation = -30414.186911 eV Core-core repulsion = 25938.910359 eV Total energy + Delta-G solvation = -4475.276552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.78977 -48.79823 -42.54357 -41.77056 -39.42169 -37.60165 -35.96002 -34.30789 -32.80591 -31.64062 -30.90346 -30.40600 -27.68562 -27.10527 -26.43396 -24.60541 -23.35603 -22.81845 -21.75957 -21.23190 -21.00296 -19.20718 -18.90073 -18.35776 -18.04966 -17.43398 -17.12272 -16.77472 -16.64607 -16.61442 -16.16057 -16.04359 -15.66440 -15.59239 -15.27027 -15.19479 -14.90171 -14.73282 -14.66540 -14.57399 -14.13482 -14.03146 -13.92053 -13.69035 -13.39636 -13.36560 -13.20838 -12.76475 -12.45476 -12.43334 -12.23872 -12.05012 -11.89089 -11.77282 -11.18166 -10.96777 -10.83978 -10.60928 -9.99871 -9.90043 -9.27111 -8.75124 -6.47029 0.80961 0.91123 1.37128 1.51187 1.54915 1.62790 1.71780 1.78724 2.06169 2.29089 2.40566 2.52298 2.56436 2.84712 3.07586 3.11973 3.17796 3.64623 3.71924 4.01515 4.07431 4.13604 4.22146 4.28384 4.33741 4.36136 4.43561 4.46979 4.50482 4.56136 4.65288 4.72298 4.77917 4.79694 4.90175 5.08988 5.12002 5.28633 5.30409 5.73900 5.87643 5.94488 6.10865 6.15107 6.46065 6.62284 6.67205 7.37558 8.65332 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.028880 B = 0.002571 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.283641 B =10889.522092 C =11052.766351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.373 5.373 3 C 0.082 3.918 4 C -0.286 4.286 5 C 0.220 3.780 6 N -0.419 5.419 7 C 0.061 3.939 8 C 0.044 3.956 9 F -0.177 7.177 10 C 0.499 3.501 11 O -0.548 6.548 12 N -0.599 5.599 13 C 0.150 3.850 14 C 0.001 3.999 15 C -0.614 4.614 16 H 0.066 0.934 17 C -0.042 4.042 18 N -0.938 5.938 19 Si 1.128 2.872 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.089 3.911 24 C 0.081 3.919 25 F -0.179 7.179 26 C 0.046 3.954 27 N -0.359 5.359 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.222 0.778 32 H 0.165 0.835 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.069 0.931 37 H -0.034 1.034 38 H -0.001 1.001 39 H 0.251 0.749 40 H 0.109 0.891 41 H 0.151 0.849 42 H 0.085 0.915 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.781 20.852 12.918 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.156 5.156 3 C -0.065 4.065 4 C -0.316 4.316 5 C -0.036 4.036 6 N -0.140 5.140 7 C -0.067 4.067 8 C 0.020 3.980 9 F -0.158 7.158 10 C 0.283 3.717 11 O -0.426 6.426 12 N -0.330 5.330 13 C 0.030 3.970 14 C -0.037 4.037 15 C -0.652 4.652 16 H 0.084 0.916 17 C -0.239 4.239 18 N -0.575 5.575 19 Si 0.948 3.052 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.033 4.033 24 C 0.061 3.939 25 F -0.159 7.159 26 C -0.082 4.082 27 N -0.188 5.188 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.238 0.762 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.088 0.912 37 H -0.015 1.015 38 H 0.017 0.983 39 H 0.061 0.939 40 H 0.127 0.873 41 H 0.169 0.831 42 H 0.103 0.897 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.993 18.939 12.478 30.235 hybrid contribution -1.275 0.973 -1.257 2.037 sum -21.268 19.912 11.222 31.221 Atomic orbital electron populations 1.22220 0.71691 1.05888 1.04734 1.48545 1.07723 1.02839 1.56514 1.23195 0.89780 0.94977 0.98575 1.21459 0.99039 0.92088 1.19011 1.20984 0.88565 0.93526 1.00557 1.60847 1.13647 1.03583 1.35875 1.23124 1.01669 0.92137 0.89804 1.23118 0.90161 1.01056 0.83619 1.92905 1.77337 1.97396 1.48125 1.20816 0.89280 0.79106 0.82452 1.90730 1.64437 1.54120 1.33298 1.48408 1.11194 1.49215 1.24217 1.21479 0.77515 0.95458 1.02520 1.19469 0.97013 0.93807 0.93449 1.22375 0.95446 1.08560 1.38853 0.91568 1.27609 1.09940 0.94045 0.92322 1.70868 1.04816 1.40485 1.41363 0.82825 0.68947 0.76414 0.77032 1.18468 1.21081 1.20092 1.23103 0.81268 1.06255 0.92703 1.22936 0.96149 0.82514 0.92302 1.92929 1.86814 1.50901 1.85298 1.23106 0.97701 0.85511 1.01895 1.77301 1.01197 1.10393 1.29889 0.89334 0.86058 0.90024 0.76168 0.81764 0.85178 0.88171 0.87011 0.91247 1.01534 0.98320 0.93923 0.87306 0.83108 0.89683 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.47 127.77 1.47 2.00 16 2 N -0.37 -5.42 4.01 -369.60 -1.48 -6.90 16 3 C 0.08 0.89 11.48 83.52 0.96 1.85 16 4 C -0.29 -4.51 10.28 22.11 0.23 -4.28 16 5 C 0.22 4.62 6.29 133.38 0.84 5.46 16 6 N -0.42 -8.65 5.22 -697.01 -3.64 -12.29 16 7 C 0.06 1.41 6.00 86.54 0.52 1.93 16 8 C 0.04 1.40 1.79 -10.18 -0.02 1.38 16 9 F -0.18 -6.61 17.02 44.97 0.77 -5.85 16 10 C 0.50 19.55 6.80 87.93 0.60 20.15 16 11 O -0.55 -26.33 17.58 -3.05 -0.05 -26.38 16 12 N -0.60 -21.25 2.93 -818.34 -2.40 -23.65 16 13 C 0.15 6.12 5.87 86.38 0.51 6.63 16 14 C 0.00 0.03 4.61 29.85 0.14 0.17 16 15 C -0.61 -35.13 9.11 25.60 0.23 -34.90 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 18 N -0.94 -60.47 13.65 21.45 0.29 -60.18 16 19 Si 1.13 50.77 29.90 68.60 2.05 52.82 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.09 2.26 6.52 86.75 0.57 2.82 16 24 C 0.08 2.23 1.93 -9.24 -0.02 2.21 16 25 F -0.18 -6.02 17.11 44.97 0.77 -5.25 16 26 C 0.05 0.96 5.70 86.50 0.49 1.45 16 27 N -0.36 -7.94 10.96 -54.55 -0.60 -8.54 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.13 2.72 7.60 -2.39 -0.02 2.70 16 34 H 0.10 2.27 7.26 -2.38 -0.02 2.26 16 35 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.07 2.98 7.92 -2.38 -0.02 2.96 16 37 H -0.03 -2.11 8.01 -2.38 -0.02 -2.13 16 38 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 39 H 0.25 16.71 7.22 -92.71 -0.67 16.04 16 40 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.15 2.56 7.71 -2.39 -0.02 2.54 16 42 H 0.08 2.04 6.64 -2.39 -0.02 2.03 16 43 H 0.15 2.20 7.96 -2.39 -0.02 2.18 16 Total: -1.00 -86.59 365.90 3.81 -82.78 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.14 Total: 8.58 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.97 Total: 4.86 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -7.83 Total: -111.56 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 1.53 Total: -11.09 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -86.59 3.81 -82.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273564134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.037 kcal (2) G-P(sol) polarization free energy of solvation -86.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds