Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39926 * 125.75069 * 2 1 4 4 C 1.30410 * 108.96139 * 179.97438 * 3 2 1 5 5 C 1.41336 * 108.04993 * 0.02562 * 4 3 2 6 6 C 1.47303 * 126.44099 * 179.97438 * 5 4 3 7 7 O 1.21609 * 120.00266 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99261 * 0.02637 * 6 5 4 9 9 C 1.46502 * 119.99602 * 174.66249 * 8 6 5 10 10 C 1.52994 * 109.47309 * 303.92787 * 9 8 6 11 11 N 1.46498 * 109.47149 * 305.42144 * 10 9 8 12 12 C 1.36941 * 119.99738 * 175.03904 * 11 10 9 13 13 H 1.07994 * 120.00441 * 359.97438 * 12 11 10 14 14 C 1.38810 * 119.99834 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99848 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00374 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47311 * 89.99751 * 16 14 12 18 18 H 1.48496 * 109.47457 * 210.00226 * 16 14 12 19 19 H 1.48502 * 109.46760 * 329.99639 * 16 14 12 20 20 C 1.52999 * 109.47022 * 183.92664 * 9 8 6 21 21 C 1.53002 * 109.47381 * 300.00186 * 20 9 8 22 22 C 1.52996 * 109.47067 * 299.99821 * 21 20 9 23 23 C 1.53005 * 109.47067 * 60.00107 * 22 21 20 24 24 C 1.53002 * 109.47090 * 299.99880 * 23 22 21 25 25 C 1.34344 * 125.74915 * 179.97438 * 2 1 3 26 26 Cl 1.73598 * 126.32120 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47243 * 90.02274 * 1 2 3 28 28 H 1.09005 * 109.47053 * 210.02220 * 1 2 3 29 29 H 1.09003 * 109.47233 * 330.01819 * 1 2 3 30 30 H 1.07997 * 125.97757 * 179.97438 * 4 3 2 31 31 H 0.96999 * 120.00713 * 354.66621 * 8 6 5 32 32 H 1.09005 * 109.47265 * 65.42222 * 10 9 8 33 33 H 1.09001 * 109.47494 * 185.42191 * 10 9 8 34 34 H 0.96998 * 120.00054 * 355.03794 * 11 10 9 35 35 H 0.96999 * 119.99794 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47665 * 60.00587 * 20 9 8 37 37 H 1.09011 * 109.47138 * 180.02562 * 20 9 8 38 38 H 1.09001 * 109.46966 * 180.02562 * 21 20 9 39 39 H 1.08998 * 109.46984 * 60.00060 * 21 20 9 40 40 H 1.09007 * 109.47650 * 299.99994 * 22 21 20 41 41 H 1.09000 * 109.47428 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47026 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47111 * 59.99684 * 23 22 21 44 44 H 1.09002 * 109.47194 * 300.00327 * 24 23 22 45 45 H 1.08994 * 109.47448 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7589 0.0006 5 6 3.5621 -0.6541 0.0003 6 6 4.7661 -1.5028 0.0003 7 8 4.6563 -2.7139 -0.0004 8 7 5.9892 -0.9369 0.0009 9 6 7.1844 -1.7760 0.1189 10 6 7.0888 -2.6242 1.3886 11 7 6.8621 -1.7513 2.5431 12 6 6.6411 -2.2956 3.7800 13 1 6.6336 -3.3684 3.9045 14 6 6.4258 -1.4686 4.8739 15 7 6.4345 -0.1611 4.7221 16 14 6.1251 -2.2109 6.5614 17 1 7.4219 -2.3862 7.2633 18 1 5.2526 -1.3060 7.3520 19 1 5.4616 -3.5309 6.4103 20 6 8.4269 -0.8863 0.1923 21 6 8.5226 -0.0380 -1.0775 22 6 8.6238 -0.9557 -2.2975 23 6 7.3812 -1.8455 -2.3709 24 6 7.2856 -2.6937 -1.1012 25 6 2.2498 -1.0903 0.0005 26 17 1.7154 -2.7420 0.0019 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5136 30 1 4.3908 1.4123 0.0003 31 1 6.0784 0.0259 -0.0766 32 1 6.2598 -3.3259 1.2953 33 1 8.0182 -3.1763 1.5276 34 1 6.8685 -0.7878 2.4313 35 1 6.2843 0.4168 5.4865 36 1 8.3549 -0.2325 1.0614 37 1 9.3162 -1.5106 0.2796 38 1 9.4081 0.5955 -1.0254 39 1 7.6334 0.5863 -1.1652 40 1 9.5131 -1.5801 -2.2098 41 1 8.6925 -0.3515 -3.2020 42 1 7.4532 -2.4990 -3.2403 43 1 6.4921 -1.2212 -2.4586 44 1 8.1748 -3.3180 -1.0134 45 1 6.4007 -3.3279 -1.1536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276208627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = 43.026475 kcal Electronic energy + Delta-G solvation = -28913.987855 eV Core-core repulsion = 24994.227091 eV Total energy + Delta-G solvation = -3919.760764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37939 -39.96261 -37.33427 -36.82453 -34.53096 -33.65622 -32.93925 -31.22409 -30.58877 -30.03624 -29.10774 -27.09223 -25.17358 -23.08373 -22.89000 -22.14065 -21.26764 -20.49145 -20.07783 -18.59256 -18.04579 -17.06321 -16.21894 -15.95530 -15.35783 -14.98615 -14.68313 -14.43195 -14.31296 -14.01137 -13.67489 -13.61087 -13.25727 -13.14409 -12.95460 -12.85409 -12.75062 -12.17408 -12.03936 -11.97336 -11.89030 -11.69141 -11.58950 -11.17085 -10.87762 -10.79506 -10.75534 -10.71870 -10.42019 -10.10716 -9.98628 -9.79850 -9.54815 -9.48891 -9.11094 -8.69766 -8.62535 -8.29658 -6.73857 -5.65195 -2.90073 1.33495 1.41712 2.22556 2.49854 3.50046 3.55372 3.57356 3.63483 3.94407 4.31646 4.69679 4.84935 4.89064 4.94940 4.98326 5.02775 5.11922 5.16046 5.26463 5.41282 5.45007 5.56943 5.70686 5.73887 5.76021 5.81267 5.88879 5.96138 6.19926 6.23223 6.28063 6.32210 6.40651 6.43734 6.45191 6.53350 6.62028 6.71908 6.79272 7.06285 7.27939 7.36798 7.83107 8.11813 8.54815 8.86748 9.66239 10.25736 10.61504 11.58086 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.005779 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.857765 B = 4843.583309 C = 7231.181539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.359 5.359 3 N -0.279 5.279 4 C 0.093 3.907 5 C -0.255 4.255 6 C 0.603 3.397 7 O -0.528 6.528 8 N -0.704 5.704 9 C 0.182 3.818 10 C 0.139 3.861 11 N -0.723 5.723 12 C -0.224 4.224 13 H 0.067 0.933 14 C -0.017 4.017 15 N -0.936 5.936 16 Si 0.902 3.098 17 H -0.292 1.292 18 H -0.294 1.294 19 H -0.283 1.283 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.127 4.127 25 C 0.179 3.821 26 Cl 0.025 6.975 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.197 0.803 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.017 0.983 34 H 0.382 0.618 35 H 0.251 0.749 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 1.917 -16.867 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.142 5.142 3 N -0.100 5.100 4 C -0.094 4.094 5 C -0.271 4.271 6 C 0.389 3.611 7 O -0.405 6.405 8 N -0.355 5.355 9 C 0.096 3.904 10 C 0.011 3.989 11 N -0.367 5.367 12 C -0.356 4.356 13 H 0.085 0.915 14 C -0.212 4.212 15 N -0.586 5.586 16 Si 0.734 3.266 17 H -0.219 1.219 18 H -0.220 1.220 19 H -0.209 1.209 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.166 4.166 25 C 0.021 3.979 26 Cl 0.054 6.946 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.213 0.787 31 H 0.226 0.774 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.216 0.784 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.152 1.749 -16.712 18.262 hybrid contribution 0.230 -0.290 1.164 1.222 sum -6.922 1.459 -15.548 17.081 Atomic orbital electron populations 1.22032 0.73393 1.05356 1.03994 1.48458 1.07257 1.02416 1.56061 1.77281 1.02063 1.05330 1.25287 1.23990 0.95363 0.93577 0.96446 1.20049 0.92255 0.93804 1.21023 1.16766 0.81788 0.86811 0.75742 1.90722 1.86416 1.13584 1.49749 1.45593 1.04929 1.09899 1.75072 1.20503 0.83599 0.90824 0.95485 1.21109 0.98765 0.93479 0.85545 1.42203 1.86338 1.05004 1.03183 1.19220 1.39317 0.91678 0.85360 0.91496 1.24641 1.03517 0.95358 0.97684 1.69645 1.57766 1.01608 1.29562 0.86249 0.77524 0.77904 0.84962 1.21926 1.22021 1.20933 1.21789 0.97148 0.98850 0.97985 1.21554 1.01429 0.97824 0.94848 1.21546 0.98387 0.98023 0.97588 1.21449 0.97910 0.98187 0.97496 1.21905 1.03140 0.98119 0.93440 1.22007 0.90787 0.83886 1.01204 1.98441 1.89854 1.10061 1.96276 0.89998 0.89084 0.88315 0.78678 0.77395 0.93220 0.96508 0.78439 0.93875 0.90218 0.90670 0.92075 0.92280 0.92202 0.92696 0.92723 0.92164 0.91685 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.28 59.84 0.67 1.47 16 2 N -0.36 -4.84 3.98 -64.32 -0.26 -5.10 16 3 N -0.28 -4.06 12.49 30.86 0.39 -3.68 16 4 C 0.09 1.33 11.50 -16.98 -0.20 1.14 16 5 C -0.26 -4.20 6.13 -105.02 -0.64 -4.85 16 6 C 0.60 10.80 7.22 -12.58 -0.09 10.71 16 7 O -0.53 -10.74 11.94 5.27 0.06 -10.68 16 8 N -0.70 -11.12 3.57 -48.71 -0.17 -11.29 16 9 C 0.18 2.95 0.32 -131.82 -0.04 2.91 16 10 C 0.14 2.96 4.79 -4.05 -0.02 2.94 16 11 N -0.72 -18.33 5.19 -59.91 -0.31 -18.64 16 12 C -0.22 -6.45 9.99 -15.06 -0.15 -6.60 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 15 N -0.94 -28.39 13.06 55.49 0.72 -27.66 16 16 Si 0.90 23.22 29.55 -169.99 -5.02 18.19 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 18 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 20 C -0.12 -1.73 4.67 -26.73 -0.12 -1.86 16 21 C -0.12 -1.35 5.75 -26.73 -0.15 -1.50 16 22 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 23 C -0.11 -1.35 5.77 -26.73 -0.15 -1.51 16 24 C -0.13 -1.85 4.58 -26.73 -0.12 -1.97 16 25 C 0.18 2.77 7.53 -16.44 -0.12 2.64 16 26 Cl 0.03 0.37 27.34 -51.86 -1.42 -1.05 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.67 7.77 -51.93 -0.40 0.27 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.20 2.15 7.51 -52.49 -0.39 1.75 16 31 H 0.39 5.33 6.17 -40.82 -0.25 5.08 16 32 H 0.05 1.18 6.25 -51.93 -0.32 0.86 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 9.89 6.46 -40.82 -0.26 9.63 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 1.33 7.11 -51.93 -0.37 0.96 16 37 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.63 6.78 -51.93 -0.35 0.28 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.41 6.28 -51.93 -0.33 1.09 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -34.52 370.74 -8.25 -42.78 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.43 Total: 10.03 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.40 Total: 1.52 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 0.37 Total: -66.37 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.06 Total: -10.68 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.42 Total: -1.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.52 -8.25 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276208627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.802 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds