Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39926 * 125.75069 * 2 1 4 4 C 1.30410 * 108.96139 * 179.97438 * 3 2 1 5 5 C 1.41336 * 108.04993 * 0.02562 * 4 3 2 6 6 C 1.47303 * 126.44099 * 179.97438 * 5 4 3 7 7 O 1.21609 * 120.00266 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99261 * 0.02637 * 6 5 4 9 9 C 1.46502 * 119.99602 * 174.66249 * 8 6 5 10 10 C 1.52994 * 109.47309 * 303.92787 * 9 8 6 11 11 N 1.46498 * 109.47149 * 305.42144 * 10 9 8 12 12 C 1.36941 * 119.99738 * 175.03904 * 11 10 9 13 13 H 1.07994 * 120.00441 * 359.97438 * 12 11 10 14 14 C 1.38810 * 119.99834 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99848 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00374 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47311 * 89.99751 * 16 14 12 18 18 H 1.48496 * 109.47457 * 210.00226 * 16 14 12 19 19 H 1.48502 * 109.46760 * 329.99639 * 16 14 12 20 20 C 1.52999 * 109.47022 * 183.92664 * 9 8 6 21 21 C 1.53002 * 109.47381 * 300.00186 * 20 9 8 22 22 C 1.52996 * 109.47067 * 299.99821 * 21 20 9 23 23 C 1.53005 * 109.47067 * 60.00107 * 22 21 20 24 24 C 1.53002 * 109.47090 * 299.99880 * 23 22 21 25 25 C 1.34344 * 125.74915 * 179.97438 * 2 1 3 26 26 Cl 1.73598 * 126.32120 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47243 * 90.02274 * 1 2 3 28 28 H 1.09005 * 109.47053 * 210.02220 * 1 2 3 29 29 H 1.09003 * 109.47233 * 330.01819 * 1 2 3 30 30 H 1.07997 * 125.97757 * 179.97438 * 4 3 2 31 31 H 0.96999 * 120.00713 * 354.66621 * 8 6 5 32 32 H 1.09005 * 109.47265 * 65.42222 * 10 9 8 33 33 H 1.09001 * 109.47494 * 185.42191 * 10 9 8 34 34 H 0.96998 * 120.00054 * 355.03794 * 11 10 9 35 35 H 0.96999 * 119.99794 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47665 * 60.00587 * 20 9 8 37 37 H 1.09011 * 109.47138 * 180.02562 * 20 9 8 38 38 H 1.09001 * 109.46966 * 180.02562 * 21 20 9 39 39 H 1.08998 * 109.46984 * 60.00060 * 21 20 9 40 40 H 1.09007 * 109.47650 * 299.99994 * 22 21 20 41 41 H 1.09000 * 109.47428 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47026 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47111 * 59.99684 * 23 22 21 44 44 H 1.09002 * 109.47194 * 300.00327 * 24 23 22 45 45 H 1.08994 * 109.47448 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7589 0.0006 5 6 3.5621 -0.6541 0.0003 6 6 4.7661 -1.5028 0.0003 7 8 4.6563 -2.7139 -0.0004 8 7 5.9892 -0.9369 0.0009 9 6 7.1844 -1.7760 0.1189 10 6 7.0888 -2.6242 1.3886 11 7 6.8621 -1.7513 2.5431 12 6 6.6411 -2.2956 3.7800 13 1 6.6336 -3.3684 3.9045 14 6 6.4258 -1.4686 4.8739 15 7 6.4345 -0.1611 4.7221 16 14 6.1251 -2.2109 6.5614 17 1 7.4219 -2.3862 7.2633 18 1 5.2526 -1.3060 7.3520 19 1 5.4616 -3.5309 6.4103 20 6 8.4269 -0.8863 0.1923 21 6 8.5226 -0.0380 -1.0775 22 6 8.6238 -0.9557 -2.2975 23 6 7.3812 -1.8455 -2.3709 24 6 7.2856 -2.6937 -1.1012 25 6 2.2498 -1.0903 0.0005 26 17 1.7154 -2.7420 0.0019 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5136 30 1 4.3908 1.4123 0.0003 31 1 6.0784 0.0259 -0.0766 32 1 6.2598 -3.3259 1.2953 33 1 8.0182 -3.1763 1.5276 34 1 6.8685 -0.7878 2.4313 35 1 6.2843 0.4168 5.4865 36 1 8.3549 -0.2325 1.0614 37 1 9.3162 -1.5106 0.2796 38 1 9.4081 0.5955 -1.0254 39 1 7.6334 0.5863 -1.1652 40 1 9.5131 -1.5801 -2.2098 41 1 8.6925 -0.3515 -3.2020 42 1 7.4532 -2.4990 -3.2403 43 1 6.4921 -1.2212 -2.4586 44 1 8.1748 -3.3180 -1.0134 45 1 6.4007 -3.3279 -1.1536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276208627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = 20.340757 kcal Electronic energy + Delta-G solvation = -28914.971582 eV Core-core repulsion = 24994.227091 eV Total energy + Delta-G solvation = -3920.744491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50655 -41.24716 -38.61259 -37.98112 -36.32305 -34.77968 -34.31763 -32.99932 -31.69898 -31.34025 -30.52783 -28.02279 -26.96075 -24.63633 -24.26232 -23.35717 -22.38547 -21.73976 -21.25484 -19.88678 -19.21037 -19.14477 -17.35787 -16.99865 -16.81068 -16.45201 -16.11825 -15.75269 -15.63191 -15.23286 -15.12680 -14.86563 -14.69823 -14.48286 -14.36132 -13.84852 -13.69394 -13.62655 -13.34929 -13.10806 -13.08562 -12.95588 -12.83519 -12.80184 -12.68170 -12.50289 -12.07924 -11.92035 -11.89694 -11.83486 -11.36984 -11.08168 -11.02455 -10.92487 -10.53461 -10.35663 -9.90422 -9.59586 -8.87068 -7.90619 -5.14856 0.17360 0.27014 1.06773 1.44409 1.45408 1.52584 1.53706 2.34900 2.57069 2.63706 3.32309 3.42912 3.75673 3.88821 3.91577 3.95531 3.98467 4.18025 4.28023 4.31710 4.34039 4.45004 4.55307 4.55875 4.64755 4.69159 4.71433 4.89186 4.94047 4.99000 5.18442 5.20149 5.25818 5.28533 5.34088 5.39693 5.46006 5.46674 5.50961 5.59145 5.61585 5.87405 6.26076 6.32330 6.83335 7.39914 7.53327 8.16582 8.45195 9.32147 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.005779 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.857765 B = 4843.583309 C = 7231.181539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.352 5.352 3 N -0.288 5.288 4 C 0.095 3.905 5 C -0.286 4.286 6 C 0.596 3.404 7 O -0.560 6.560 8 N -0.695 5.695 9 C 0.189 3.811 10 C 0.140 3.860 11 N -0.725 5.725 12 C -0.236 4.236 13 H 0.060 0.940 14 C -0.069 4.069 15 N -0.960 5.960 16 Si 0.962 3.038 17 H -0.285 1.285 18 H -0.294 1.294 19 H -0.280 1.280 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.106 4.106 24 C -0.121 4.121 25 C 0.169 3.831 26 Cl 0.027 6.973 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.222 0.778 31 H 0.403 0.597 32 H 0.022 0.978 33 H 0.015 0.985 34 H 0.378 0.622 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.966 2.882 -18.030 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.134 5.134 3 N -0.110 5.110 4 C -0.092 4.092 5 C -0.302 4.302 6 C 0.383 3.617 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.103 3.897 10 C 0.013 3.987 11 N -0.368 5.368 12 C -0.368 4.368 13 H 0.078 0.922 14 C -0.261 4.261 15 N -0.612 5.612 16 Si 0.792 3.208 17 H -0.212 1.212 18 H -0.221 1.221 19 H -0.205 1.205 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.144 4.144 24 C -0.160 4.160 25 C 0.010 3.990 26 Cl 0.056 6.944 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.239 0.761 31 H 0.239 0.761 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.211 0.789 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.079 2.730 -17.900 19.442 hybrid contribution 0.136 -0.653 1.521 1.661 sum -6.943 2.076 -16.379 17.910 Atomic orbital electron populations 1.22487 0.70736 1.06638 1.06087 1.48846 1.08692 1.01465 1.54406 1.77244 1.02270 1.05876 1.25585 1.24385 0.96175 0.92956 0.95642 1.20123 0.92162 0.94780 1.23115 1.17091 0.82677 0.86675 0.75209 1.90699 1.86956 1.14964 1.51378 1.45506 1.04338 1.10456 1.74309 1.20386 0.84668 0.91029 0.93653 1.21164 0.97228 0.93511 0.86830 1.42249 1.86041 1.05173 1.03370 1.19488 1.38822 0.91543 0.86957 0.92207 1.25332 1.04047 0.95859 1.00881 1.69774 1.58744 1.02468 1.30176 0.85308 0.77433 0.77156 0.80922 1.21178 1.22095 1.20535 1.21712 0.95944 0.98482 0.98992 1.21536 1.02670 0.97631 0.93205 1.21521 0.97589 0.97840 0.98007 1.21404 0.98646 0.98143 0.96188 1.21821 1.02239 0.97936 0.94007 1.22151 0.91156 0.84494 1.01225 1.98434 1.89752 1.10008 1.96254 0.87486 0.88025 0.86859 0.76137 0.76062 0.95956 0.96712 0.78873 0.94224 0.92682 0.90550 0.90427 0.91443 0.91643 0.90460 0.91422 0.92629 0.91023 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 11.28 127.77 1.44 2.65 16 2 N -0.35 -9.10 3.98 -357.40 -1.42 -10.52 16 3 N -0.29 -8.07 12.49 -56.26 -0.70 -8.77 16 4 C 0.09 2.63 11.50 85.67 0.99 3.62 16 5 C -0.29 -9.42 6.13 -20.12 -0.12 -9.55 16 6 C 0.60 21.78 7.22 86.63 0.63 22.41 16 7 O -0.56 -23.67 11.94 -4.06 -0.05 -23.72 16 8 N -0.69 -22.00 3.57 -426.28 -1.52 -23.52 16 9 C 0.19 6.15 0.32 3.60 0.00 6.15 16 10 C 0.14 6.15 4.79 86.38 0.41 6.56 16 11 N -0.73 -37.65 5.19 -343.46 -1.78 -39.43 16 12 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 13 H 0.06 3.52 7.83 -2.91 -0.02 3.49 16 14 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 15 N -0.96 -58.69 13.06 21.65 0.28 -58.40 16 16 Si 0.96 48.05 29.55 68.60 2.03 50.08 16 17 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 18 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 19 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 20 C -0.11 -3.19 4.67 30.59 0.14 -3.04 16 21 C -0.11 -2.27 5.75 30.59 0.18 -2.09 16 22 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 23 C -0.11 -2.34 5.77 30.60 0.18 -2.16 16 24 C -0.12 -3.48 4.58 30.60 0.14 -3.34 16 25 C 0.17 5.21 7.53 84.32 0.63 5.84 16 26 Cl 0.03 0.80 27.34 -2.72 -0.07 0.72 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.34 7.77 -2.38 -0.02 1.32 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.22 4.55 7.51 -2.91 -0.02 4.53 16 31 H 0.40 10.72 6.17 -92.71 -0.57 10.14 16 32 H 0.02 1.12 6.25 -2.38 -0.01 1.10 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.38 20.01 6.46 -92.71 -0.60 19.41 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.05 1.83 7.11 -2.39 -0.02 1.81 16 37 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.26 6.78 -2.39 -0.02 1.24 16 40 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.29 7.60 -2.39 -0.02 1.27 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 2.03 6.28 -2.39 -0.02 2.01 16 Total: -1.00 -75.25 370.74 2.72 -72.53 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.14 Total: 32.40 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.10 Total: 8.63 kcal Atomic # 7 Polarization: -135.50 SS G_CDS: -5.14 Total: -140.65 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -0.07 Total: 0.72 kcal Total: -75.25 2.72 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276208627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.870 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds