Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28785 * 125.44338 * 2 1 4 4 N 1.29004 * 108.72123 * 179.72577 * 3 2 1 5 5 C 1.33325 * 107.35068 * 0.43337 * 4 3 2 6 6 C 1.50704 * 126.54482 * 179.83461 * 5 4 3 7 7 N 1.46897 * 109.47107 * 269.68934 * 6 5 4 8 8 C 1.46896 * 111.00049 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47293 * 179.97438 * 8 7 6 10 10 H 1.09004 * 112.90092 * 43.75051 * 9 8 7 11 11 C 1.53778 * 113.61263 * 174.99736 * 9 8 7 12 12 C 1.53787 * 87.08035 * 139.98349 * 11 9 8 13 13 H 1.08994 * 113.61447 * 220.02014 * 12 11 9 14 14 N 1.46496 * 113.61210 * 89.11438 * 12 11 9 15 15 C 1.34774 * 120.00099 * 155.00440 * 14 12 11 16 16 O 1.21282 * 120.00036 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00600 * 180.02562 * 15 14 12 18 18 S 1.81001 * 109.47417 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99999 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.38794 * 119.99939 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99986 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00033 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47387 * 89.99313 * 23 21 19 25 25 H 1.48496 * 109.46844 * 209.99870 * 23 21 19 26 26 H 1.48498 * 109.46759 * 329.99524 * 23 21 19 27 27 C 1.53778 * 113.61526 * 272.49822 * 9 8 7 28 28 N 1.28874 * 125.45028 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47032 * 270.00122 * 1 2 3 30 30 H 1.09005 * 109.47140 * 29.99923 * 1 2 3 31 31 H 1.08996 * 109.46996 * 150.00066 * 1 2 3 32 32 H 1.08998 * 109.46791 * 149.68938 * 6 5 4 33 33 H 1.08996 * 109.47008 * 29.69041 * 6 5 4 34 34 H 1.00902 * 110.99746 * 303.95703 * 7 6 5 35 35 H 1.09008 * 109.47110 * 59.99816 * 8 7 6 36 36 H 1.09000 * 109.47263 * 299.99714 * 8 7 6 37 37 H 1.08998 * 113.61879 * 25.43831 * 11 9 8 38 38 H 1.08997 * 113.69304 * 254.53918 * 11 9 8 39 39 H 0.97002 * 120.00490 * 335.00104 * 14 12 11 40 40 H 1.09005 * 109.46821 * 300.00153 * 17 15 14 41 41 H 1.09008 * 109.47008 * 59.99541 * 17 15 14 42 42 H 0.97001 * 120.00000 * 179.97438 * 22 21 19 43 43 H 1.08993 * 113.61229 * 105.47191 * 27 9 8 44 44 H 1.09000 * 113.61263 * 334.56841 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0492 0.0000 4 7 3.4473 0.6780 0.0058 5 6 3.4620 -0.6551 0.0000 6 6 4.6825 -1.5391 -0.0001 7 7 5.0791 -1.8263 -1.3850 8 6 6.2680 -2.6882 -1.4243 9 6 6.6494 -2.9651 -2.8799 10 1 6.6040 -2.0747 -3.5070 11 6 7.9564 -3.7608 -3.0335 12 6 7.2617 -4.5312 -4.1688 13 1 7.4842 -5.5981 -4.1724 14 7 7.4256 -3.9100 -5.4854 15 6 7.3386 -4.6616 -6.6007 16 8 7.1250 -5.8524 -6.5144 17 6 7.5077 -4.0229 -7.9551 18 16 7.3383 -5.2839 -9.2424 19 6 7.5729 -4.2893 -10.6779 20 1 7.7561 -3.2297 -10.5765 21 6 7.5224 -4.8675 -11.9386 22 7 7.2997 -6.1589 -12.0620 23 14 7.7718 -3.8132 -13.4604 24 1 9.2154 -3.7777 -13.8069 25 1 7.0047 -4.3902 -14.5934 26 1 7.2935 -2.4335 -13.1904 27 6 5.9295 -4.1820 -3.4845 28 7 2.2125 -1.0498 -0.0005 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.4547 -2.4730 0.5137 33 1 5.4988 -1.0315 0.5138 34 1 4.3166 -2.2388 -1.9013 35 1 6.0508 -3.6301 -0.9204 36 1 7.0955 -2.1889 -0.9202 37 1 8.1952 -4.3794 -2.1685 38 1 8.8000 -3.1570 -3.3680 39 1 7.5967 -2.9577 -5.5546 40 1 6.7444 -3.2570 -8.0934 41 1 8.4957 -3.5672 -8.0211 42 1 7.2640 -6.5630 -12.9431 43 1 5.1360 -3.9171 -4.1832 44 1 5.6142 -4.9158 -2.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276941214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = 115.341789 kcal Electronic energy + Delta-G solvation = -25299.438972 eV Core-core repulsion = 21417.150493 eV Total energy + Delta-G solvation = -3882.288479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.73170 -40.18536 -38.29330 -36.66896 -35.30338 -33.64181 -32.86777 -32.41734 -30.03899 -29.11360 -27.92084 -25.96561 -25.53745 -25.27448 -23.52449 -22.45697 -22.34031 -20.78113 -19.24422 -18.07636 -17.89530 -17.82233 -16.69607 -16.20853 -15.98145 -15.52588 -15.43728 -14.90585 -14.79528 -14.55376 -14.26982 -14.19111 -13.99588 -13.66483 -13.53682 -13.20242 -13.12889 -12.77869 -12.64128 -12.51578 -12.31973 -12.12502 -11.65803 -11.39057 -11.32774 -11.15265 -11.05421 -11.01468 -10.75438 -10.73395 -10.53522 -10.27603 -9.79958 -9.39443 -9.06007 -8.94587 -8.84660 -8.22722 -6.48965 -6.20783 -3.91247 0.79292 1.49434 1.71756 3.03261 3.08030 3.23248 3.28710 3.32621 3.33141 3.71422 3.76967 3.86005 4.21405 4.28529 4.31417 4.33679 4.43638 4.60149 4.66129 4.74431 4.83236 5.03071 5.08844 5.14364 5.15381 5.25231 5.30760 5.35160 5.40090 5.50713 5.56087 5.60184 5.68349 5.85930 5.88244 5.89518 5.93744 6.12481 6.16138 6.46045 6.73643 6.84755 7.60653 7.73695 7.95501 8.36273 8.63100 9.24612 10.86631 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.001660 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.876641 B =16862.225912 C =18076.703990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.141 5.141 3 N -0.064 5.064 4 N -0.267 5.267 5 C 0.172 3.828 6 C 0.158 3.842 7 N -0.683 5.683 8 C 0.072 3.928 9 C -0.109 4.109 10 H 0.100 0.900 11 C -0.139 4.139 12 C 0.125 3.875 13 H 0.101 0.899 14 N -0.721 5.721 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.153 4.153 28 N -0.306 5.306 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.347 0.653 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.072 0.928 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 11.382 29.061 32.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.053 5.053 3 N -0.057 5.057 4 N -0.139 5.139 5 C -0.111 4.111 6 C 0.026 3.974 7 N -0.315 5.315 8 C -0.057 4.057 9 C -0.127 4.127 10 H 0.118 0.882 11 C -0.178 4.178 12 C 0.019 3.981 13 H 0.119 0.881 14 N -0.374 5.374 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.192 4.192 28 N -0.158 5.158 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.165 0.835 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.916 10.370 29.015 32.369 hybrid contribution 0.103 1.312 -0.854 1.569 sum -9.813 11.682 28.161 32.028 Atomic orbital electron populations 1.22460 0.69039 1.07061 1.06028 1.50040 1.10772 1.00899 1.43627 1.79025 0.96609 1.14291 1.15817 1.75873 1.09616 1.11166 1.17215 1.25458 0.92772 0.90829 1.02058 1.20081 0.90101 0.95434 0.91781 1.60417 1.09096 1.50571 1.11421 1.21992 0.92476 0.94468 0.96769 1.22638 0.96510 0.97924 0.95667 0.88202 1.23331 0.96951 0.98901 0.98621 1.21670 0.95632 0.98728 0.82100 0.88059 1.45701 1.75105 1.11853 1.04738 1.20327 0.75268 0.87009 0.85324 1.90696 1.46460 1.15103 1.86845 1.23538 1.04894 1.05604 0.96397 1.85388 1.93973 1.09320 0.94683 1.22875 1.56819 0.96590 0.92079 0.90914 1.24991 0.94599 0.95327 0.98672 1.70020 1.45965 1.10033 1.24289 0.86167 0.78378 0.79910 0.81045 1.20260 1.20763 1.19695 1.23556 0.98007 0.97546 1.00106 1.74674 1.03400 1.15603 1.22134 0.88014 0.86828 0.87029 0.92051 0.87618 0.83513 0.94468 0.90343 0.88902 0.90614 0.76717 0.89211 0.89171 0.92199 0.90931 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.63 59.85 0.70 0.88 16 2 N -0.14 -1.09 4.40 -16.69 -0.07 -1.17 16 3 N -0.06 -0.65 13.25 60.35 0.80 0.15 16 4 N -0.27 -3.04 12.50 32.45 0.41 -2.64 16 5 C 0.17 1.64 7.88 -156.62 -1.23 0.40 16 6 C 0.16 1.10 6.31 -4.98 -0.03 1.07 16 7 N -0.68 -5.18 6.49 -115.06 -0.75 -5.92 16 8 C 0.07 0.46 5.52 -3.83 -0.02 0.44 16 9 C -0.11 -0.82 3.78 -89.81 -0.34 -1.16 16 10 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.14 -1.08 7.39 -25.92 -0.19 -1.27 16 12 C 0.13 1.41 4.32 -67.12 -0.29 1.12 16 13 H 0.10 1.35 7.47 -51.93 -0.39 0.97 16 14 N -0.72 -9.53 5.26 -53.02 -0.28 -9.81 16 15 C 0.53 9.96 7.85 -10.99 -0.09 9.88 16 16 O -0.52 -11.75 15.46 5.56 0.09 -11.66 16 17 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.15 -1.44 7.43 -25.92 -0.19 -1.63 16 28 N -0.31 -2.77 12.13 32.47 0.39 -2.38 16 29 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.11 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.35 2.77 8.72 -39.29 -0.34 2.42 16 35 H 0.04 0.21 7.84 -51.92 -0.41 -0.19 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.40 4.22 8.70 -40.82 -0.36 3.86 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.72 7.89 -51.93 -0.41 0.31 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -37.86 391.83 -7.80 -45.66 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.52 Total: 0.97 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.27 Total: -6.22 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 1.23 Total: -47.30 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.86 -7.80 -45.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276941214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.002 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds