Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99870 * 2 1 4 4 H 1.08008 * 120.00103 * 201.78068 * 3 2 1 5 5 C 1.38814 * 120.00316 * 21.77675 * 3 2 1 6 6 N 1.31618 * 119.99481 * 23.18659 * 5 3 2 7 7 Si 1.86795 * 120.00339 * 203.18635 * 5 3 2 8 8 H 1.48504 * 109.47327 * 94.99270 * 7 5 3 9 9 H 1.48502 * 109.47208 * 214.99072 * 7 5 3 10 10 H 1.48497 * 109.47347 * 334.99094 * 7 5 3 11 11 C 1.46503 * 120.00110 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46563 * 269.99544 * 11 2 1 13 13 O 1.42893 * 109.47221 * 65.00043 * 12 11 2 14 14 C 1.42904 * 114.00029 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47155 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47108 * 64.99696 * 15 14 13 17 17 C 1.34775 * 119.99524 * 179.97438 * 16 15 14 18 18 O 1.21616 * 120.00408 * 4.69002 * 17 16 15 19 19 C 1.47312 * 119.99665 * 184.69312 * 17 16 15 20 20 C 1.38331 * 120.73664 * 353.79749 * 19 17 16 21 21 N 1.34940 * 119.02158 * 179.97438 * 20 19 17 22 22 C 1.46506 * 119.70533 * 179.97438 * 21 20 19 23 23 C 1.34450 * 120.59039 * 359.97438 * 21 20 19 24 24 O 1.21907 * 119.20197 * 180.02562 * 23 21 20 25 25 N 1.33330 * 121.59813 * 359.97438 * 23 21 20 26 26 C 1.32211 * 120.92955 * 0.02562 * 25 23 21 27 27 O 1.35019 * 120.33346 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.46855 * 273.60511 * 1 2 3 29 29 H 1.08994 * 109.47013 * 33.60392 * 1 2 3 30 30 H 1.08993 * 109.47025 * 153.60685 * 1 2 3 31 31 H 0.97006 * 119.99785 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46767 * 149.99979 * 11 2 1 33 33 H 1.08995 * 109.47222 * 29.98811 * 11 2 1 34 34 H 1.09003 * 109.47223 * 304.99928 * 12 11 2 35 35 H 1.09000 * 109.46990 * 185.00465 * 12 11 2 36 36 H 1.08996 * 109.47307 * 59.99710 * 14 13 12 37 37 H 1.09003 * 109.46631 * 300.00046 * 14 13 12 38 38 H 1.08996 * 109.46982 * 304.99332 * 15 14 13 39 39 H 1.09002 * 109.46796 * 184.99581 * 15 14 13 40 40 H 0.96999 * 119.99875 * 0.02562 * 16 15 14 41 41 H 1.08002 * 120.48426 * 0.25157 * 20 19 17 42 42 H 1.08997 * 109.46763 * 90.00711 * 22 21 20 43 43 H 1.09004 * 109.46784 * 209.99945 * 22 21 20 44 44 H 1.09004 * 109.46948 * 330.00152 * 22 21 20 45 45 H 0.96699 * 113.99455 * 0.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1719 1.2193 -0.3471 5 6 1.5299 2.3452 0.4460 6 7 0.5053 2.2689 1.2685 7 14 2.1501 4.0134 -0.1212 8 1 1.3578 4.4637 -1.2937 9 1 2.0044 4.9969 0.9818 10 1 3.5812 3.9060 -0.5027 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 8 1.2062 -1.9942 2.0806 14 6 1.3326 -2.4176 3.4397 15 6 -0.0564 -2.6909 4.0200 16 7 -0.6655 -3.8225 3.3166 17 6 -1.8978 -4.2457 3.6612 18 8 -2.5386 -3.6365 4.4962 19 6 -2.4686 -5.4462 3.0263 20 6 -1.8099 -6.0768 1.9860 21 7 -2.3639 -7.1744 1.4301 22 6 -1.6794 -7.8537 0.3271 23 6 -3.5384 -7.6503 1.8792 24 8 -4.0157 -8.6440 1.3588 25 7 -4.1933 -7.0623 2.8808 26 6 -3.7068 -5.9834 3.4701 27 8 -4.3799 -5.3980 4.4837 28 1 -0.3633 0.0646 1.0256 29 1 -0.3633 0.8559 -0.5687 30 1 -0.3633 -0.9205 -0.4568 31 1 0.0720 3.0790 1.5799 32 1 3.1499 -1.1381 -0.5143 33 1 1.6085 -2.0282 -0.5145 34 1 2.9644 -0.9137 1.9811 35 1 3.0734 -2.6068 1.4428 36 1 1.8209 -1.6348 4.0201 37 1 1.9304 -3.3281 3.4824 38 1 -0.6821 -1.8070 3.8966 39 1 0.0330 -2.9277 5.0802 40 1 -0.1816 -4.2675 2.6034 41 1 -0.8640 -5.6987 1.6272 42 1 -1.0113 -8.6156 0.7285 43 1 -2.4169 -8.3235 -0.3237 44 1 -1.1010 -7.1274 -0.2439 45 1 -5.2100 -5.8388 4.7109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277535484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = -74.253861 kcal Electronic energy + Delta-G solvation = -29734.264447 eV Core-core repulsion = 25368.708861 eV Total energy + Delta-G solvation = -4365.555586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.29684 -39.80955 -38.83201 -37.67727 -37.16858 -35.49162 -35.03839 -34.50762 -32.18753 -31.43786 -29.45605 -28.14918 -27.81006 -25.73642 -25.47301 -24.24562 -23.11462 -22.42279 -21.12160 -20.40745 -20.15987 -18.65939 -18.38479 -17.10727 -16.90414 -16.59774 -16.25345 -16.14698 -15.72921 -15.24773 -15.16016 -14.95268 -14.66696 -14.51189 -14.12908 -13.95537 -13.76911 -13.61243 -13.41267 -13.23104 -13.13721 -12.69365 -12.22386 -11.99196 -11.64618 -11.49590 -11.32991 -11.00829 -10.95596 -10.78198 -10.55999 -10.49671 -10.46733 -10.18752 -9.99247 -9.95891 -9.83029 -9.21878 -9.10236 -8.97651 -8.49085 -6.74594 -5.73297 -3.14238 0.07518 0.87755 1.84888 2.75870 2.83341 2.95928 3.38217 3.41755 3.45865 3.46935 3.62771 3.85382 4.06700 4.29560 4.52047 4.53246 4.68417 4.70368 4.83391 5.06627 5.09706 5.20627 5.38085 5.42810 5.46987 5.61430 5.66163 5.76147 5.93046 6.04086 6.12071 6.14988 6.33439 6.47839 6.69067 6.78370 6.82847 7.27833 7.34468 7.37521 7.69543 7.69633 7.80164 7.83352 8.11089 8.39315 9.22731 9.89061 10.39467 11.31113 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.002411 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.532629 B =11610.410513 C =12148.701277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.593 5.593 3 C -0.265 4.265 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.890 5.890 7 Si 0.895 3.105 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.153 3.847 12 C 0.042 3.958 13 O -0.368 6.368 14 C 0.050 3.950 15 C 0.127 3.873 16 N -0.719 5.719 17 C 0.577 3.423 18 O -0.514 6.514 19 C -0.293 4.293 20 C 0.244 3.756 21 N -0.518 5.518 22 C 0.056 3.944 23 C 0.654 3.346 24 O -0.527 6.527 25 N -0.616 5.616 26 C 0.496 3.504 27 O -0.411 6.411 28 H 0.033 0.967 29 H 0.031 0.969 30 H -0.002 1.002 31 H 0.252 0.748 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.396 0.604 41 H 0.189 0.811 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 -19.869 3.072 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.315 5.315 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.533 5.533 7 Si 0.725 3.275 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.287 6.287 14 C -0.028 4.028 15 C 0.004 3.996 16 N -0.372 5.372 17 C 0.361 3.639 18 O -0.389 6.389 19 C -0.306 4.306 20 C 0.103 3.897 21 N -0.231 5.231 22 C -0.086 4.086 23 C 0.356 3.644 24 O -0.400 6.400 25 N -0.375 5.375 26 C 0.293 3.707 27 O -0.202 6.202 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.231 0.769 41 H 0.206 0.794 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.813 -20.003 3.484 20.385 hybrid contribution 1.092 0.869 -0.465 1.471 sum -0.721 -19.134 3.019 19.384 Atomic orbital electron populations 1.20664 0.82491 0.95098 0.99346 1.43910 1.01912 1.00330 1.85340 1.19139 0.98123 0.85138 1.37020 0.91545 1.24911 0.98860 0.98150 0.97440 1.70164 1.24900 1.27111 1.31173 0.86400 0.78344 0.84646 0.78134 1.21575 1.21947 1.20510 1.20894 0.96431 0.88868 0.91349 1.23528 0.85012 0.96930 0.98259 1.87998 1.30546 1.87360 1.22760 1.22619 0.95485 0.98523 0.86162 1.21437 0.93501 0.89395 0.95281 1.45746 1.17249 1.35016 1.39222 1.17204 0.81314 0.82927 0.82421 1.90877 1.59316 1.55822 1.32910 1.19768 0.99267 1.05185 1.06360 1.22902 0.96015 0.83117 0.87683 1.46276 1.21528 1.23856 1.31462 1.22380 0.98820 0.98941 0.88485 1.17456 0.78610 0.85543 0.82771 1.91000 1.65928 1.25073 1.58048 1.69737 1.35389 1.15180 1.17150 1.20195 0.85309 0.83415 0.81732 1.85288 1.38176 1.51821 1.44920 0.94853 0.95039 0.98310 0.93831 0.92345 0.93952 0.93175 0.95786 0.91832 0.93839 0.89679 0.90261 0.76944 0.79413 0.89666 0.87904 0.88646 0.73060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.11 8.69 59.85 0.52 4.63 16 2 N -0.59 -14.34 2.88 -181.12 -0.52 -14.86 16 3 C -0.26 -7.07 9.60 -15.06 -0.14 -7.21 16 4 H 0.07 1.73 7.92 -52.48 -0.42 1.32 16 5 C 0.01 0.17 4.85 -17.43 -0.08 0.09 16 6 N -0.89 -25.76 11.29 55.49 0.63 -25.13 16 7 Si 0.89 21.48 29.61 -169.99 -5.03 16.44 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 C 0.15 2.86 6.12 -4.04 -0.02 2.84 16 12 C 0.04 0.70 6.28 37.16 0.23 0.93 16 13 O -0.37 -6.05 9.85 -35.23 -0.35 -6.40 16 14 C 0.05 0.62 6.07 37.16 0.23 0.85 16 15 C 0.13 1.55 6.06 -4.04 -0.02 1.53 16 16 N -0.72 -7.49 5.46 -61.42 -0.34 -7.83 16 17 C 0.58 7.06 7.75 -12.57 -0.10 6.97 16 18 O -0.51 -8.40 15.33 -15.87 -0.24 -8.65 16 19 C -0.29 -2.91 5.90 -104.70 -0.62 -3.52 16 20 C 0.24 1.58 9.90 -16.15 -0.16 1.42 16 21 N -0.52 -4.11 2.96 -128.86 -0.38 -4.49 16 22 C 0.06 0.24 10.35 59.85 0.62 0.86 16 23 C 0.65 8.18 8.32 -88.50 -0.74 7.44 16 24 O -0.53 -8.19 16.67 5.00 0.08 -8.11 16 25 N -0.62 -7.70 10.38 -16.47 -0.17 -7.87 16 26 C 0.50 5.51 7.92 -15.91 -0.13 5.39 16 27 O -0.41 -4.26 11.79 -37.90 -0.45 -4.70 16 28 H 0.03 0.89 7.47 -51.93 -0.39 0.51 16 29 H 0.03 0.82 7.42 -51.93 -0.39 0.44 16 30 H 0.00 -0.04 7.85 -51.93 -0.41 -0.44 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 33 H 0.04 0.71 7.87 -51.93 -0.41 0.31 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 2.96 6.58 -40.82 -0.27 2.69 16 41 H 0.19 0.42 6.49 -52.49 -0.34 0.08 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.59 7.36 -51.93 -0.38 0.21 16 44 H 0.09 0.13 8.02 -51.93 -0.42 -0.28 16 45 H 0.41 2.34 8.98 45.56 0.41 2.74 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -39.16 384.63 -6.91 -46.06 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.51 Total: -2.46 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: -0.42 Total: 22.20 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.78 Total: -60.18 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.95 Total: -27.86 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.16 -6.91 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277535484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.190 kcal (2) G-P(sol) polarization free energy of solvation -39.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds