Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99870 * 2 1 4 4 H 1.08008 * 120.00103 * 201.78068 * 3 2 1 5 5 C 1.38814 * 120.00316 * 21.77675 * 3 2 1 6 6 N 1.31618 * 119.99481 * 23.18659 * 5 3 2 7 7 Si 1.86795 * 120.00339 * 203.18635 * 5 3 2 8 8 H 1.48504 * 109.47327 * 94.99270 * 7 5 3 9 9 H 1.48502 * 109.47208 * 214.99072 * 7 5 3 10 10 H 1.48497 * 109.47347 * 334.99094 * 7 5 3 11 11 C 1.46503 * 120.00110 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46563 * 269.99544 * 11 2 1 13 13 O 1.42893 * 109.47221 * 65.00043 * 12 11 2 14 14 C 1.42904 * 114.00029 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47155 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47108 * 64.99696 * 15 14 13 17 17 C 1.34775 * 119.99524 * 179.97438 * 16 15 14 18 18 O 1.21616 * 120.00408 * 4.69002 * 17 16 15 19 19 C 1.47312 * 119.99665 * 184.69312 * 17 16 15 20 20 C 1.38331 * 120.73664 * 353.79749 * 19 17 16 21 21 N 1.34940 * 119.02158 * 179.97438 * 20 19 17 22 22 C 1.46506 * 119.70533 * 179.97438 * 21 20 19 23 23 C 1.34450 * 120.59039 * 359.97438 * 21 20 19 24 24 O 1.21907 * 119.20197 * 180.02562 * 23 21 20 25 25 N 1.33330 * 121.59813 * 359.97438 * 23 21 20 26 26 C 1.32211 * 120.92955 * 0.02562 * 25 23 21 27 27 O 1.35019 * 120.33346 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.46855 * 273.60511 * 1 2 3 29 29 H 1.08994 * 109.47013 * 33.60392 * 1 2 3 30 30 H 1.08993 * 109.47025 * 153.60685 * 1 2 3 31 31 H 0.97006 * 119.99785 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46767 * 149.99979 * 11 2 1 33 33 H 1.08995 * 109.47222 * 29.98811 * 11 2 1 34 34 H 1.09003 * 109.47223 * 304.99928 * 12 11 2 35 35 H 1.09000 * 109.46990 * 185.00465 * 12 11 2 36 36 H 1.08996 * 109.47307 * 59.99710 * 14 13 12 37 37 H 1.09003 * 109.46631 * 300.00046 * 14 13 12 38 38 H 1.08996 * 109.46982 * 304.99332 * 15 14 13 39 39 H 1.09002 * 109.46796 * 184.99581 * 15 14 13 40 40 H 0.96999 * 119.99875 * 0.02562 * 16 15 14 41 41 H 1.08002 * 120.48426 * 0.25157 * 20 19 17 42 42 H 1.08997 * 109.46763 * 90.00711 * 22 21 20 43 43 H 1.09004 * 109.46784 * 209.99945 * 22 21 20 44 44 H 1.09004 * 109.46948 * 330.00152 * 22 21 20 45 45 H 0.96699 * 113.99455 * 0.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1719 1.2193 -0.3471 5 6 1.5299 2.3452 0.4460 6 7 0.5053 2.2689 1.2685 7 14 2.1501 4.0134 -0.1212 8 1 1.3578 4.4637 -1.2937 9 1 2.0044 4.9969 0.9818 10 1 3.5812 3.9060 -0.5027 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 8 1.2062 -1.9942 2.0806 14 6 1.3326 -2.4176 3.4397 15 6 -0.0564 -2.6909 4.0200 16 7 -0.6655 -3.8225 3.3166 17 6 -1.8978 -4.2457 3.6612 18 8 -2.5386 -3.6365 4.4962 19 6 -2.4686 -5.4462 3.0263 20 6 -1.8099 -6.0768 1.9860 21 7 -2.3639 -7.1744 1.4301 22 6 -1.6794 -7.8537 0.3271 23 6 -3.5384 -7.6503 1.8792 24 8 -4.0157 -8.6440 1.3588 25 7 -4.1933 -7.0623 2.8808 26 6 -3.7068 -5.9834 3.4701 27 8 -4.3799 -5.3980 4.4837 28 1 -0.3633 0.0646 1.0256 29 1 -0.3633 0.8559 -0.5687 30 1 -0.3633 -0.9205 -0.4568 31 1 0.0720 3.0790 1.5799 32 1 3.1499 -1.1381 -0.5143 33 1 1.6085 -2.0282 -0.5145 34 1 2.9644 -0.9137 1.9811 35 1 3.0734 -2.6068 1.4428 36 1 1.8209 -1.6348 4.0201 37 1 1.9304 -3.3281 3.4824 38 1 -0.6821 -1.8070 3.8966 39 1 0.0330 -2.9277 5.0802 40 1 -0.1816 -4.2675 2.6034 41 1 -0.8640 -5.6987 1.6272 42 1 -1.0113 -8.6156 0.7285 43 1 -2.4169 -8.3235 -0.3237 44 1 -1.1010 -7.1274 -0.2439 45 1 -5.2100 -5.8388 4.7109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277535484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = -108.634848 kcal Electronic energy + Delta-G solvation = -29735.755318 eV Core-core repulsion = 25368.708861 eV Total energy + Delta-G solvation = -4367.046457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.07413 -40.74183 -39.67669 -38.89874 -38.06273 -37.13932 -35.79730 -35.65678 -33.45095 -32.88490 -30.68918 -29.26113 -28.57562 -27.73975 -26.19366 -25.12223 -24.75634 -23.36163 -22.09243 -22.02202 -20.95951 -19.39470 -19.18966 -18.70900 -17.86902 -17.51789 -17.37081 -17.24753 -16.79290 -16.56554 -16.10565 -16.06972 -15.70952 -15.48912 -15.31626 -15.17070 -14.91236 -14.84939 -14.49138 -14.41855 -14.00609 -13.72476 -13.49294 -13.20544 -12.94238 -12.70442 -12.60398 -12.47357 -12.42693 -12.29247 -12.26407 -11.96342 -11.73559 -11.61748 -11.38546 -11.30001 -10.93702 -10.54229 -10.28902 -10.17227 -9.79378 -8.70892 -7.78155 -5.19860 -0.56232 0.01637 1.20845 1.47502 1.50620 1.58171 1.90139 2.00702 2.15371 2.55917 2.57698 2.94255 2.97680 3.30662 3.33411 3.57218 3.82198 4.01094 4.06739 4.10243 4.21770 4.29483 4.43830 4.56256 4.63708 4.68902 4.72679 4.77230 4.79905 4.86951 4.96100 5.02191 5.07540 5.10109 5.27888 5.36427 5.41834 5.72118 5.81594 6.12591 6.37769 6.45728 6.54915 6.56766 6.87206 7.20680 7.24359 7.97244 8.41637 9.24542 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.002411 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.532629 B =11610.410513 C =12148.701277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.610 5.610 3 C -0.262 4.262 4 H 0.073 0.927 5 C -0.052 4.052 6 N -0.926 5.926 7 Si 0.954 3.046 8 H -0.292 1.292 9 H -0.301 1.301 10 H -0.265 1.265 11 C 0.143 3.857 12 C 0.052 3.948 13 O -0.391 6.391 14 C 0.053 3.947 15 C 0.133 3.867 16 N -0.704 5.704 17 C 0.580 3.420 18 O -0.565 6.565 19 C -0.318 4.318 20 C 0.283 3.717 21 N -0.509 5.509 22 C 0.047 3.953 23 C 0.646 3.354 24 O -0.570 6.570 25 N -0.645 5.645 26 C 0.492 3.508 27 O -0.423 6.423 28 H 0.000 1.000 29 H -0.001 1.001 30 H 0.032 0.968 31 H 0.244 0.756 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.414 0.586 41 H 0.243 0.757 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -21.513 1.574 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.333 5.333 3 C -0.392 4.392 4 H 0.091 0.909 5 C -0.248 4.248 6 N -0.572 5.572 7 Si 0.784 3.216 8 H -0.220 1.220 9 H -0.228 1.228 10 H -0.189 1.189 11 C 0.018 3.982 12 C -0.027 4.027 13 O -0.311 6.311 14 C -0.024 4.024 15 C 0.009 3.991 16 N -0.358 5.358 17 C 0.366 3.634 18 O -0.444 6.444 19 C -0.330 4.330 20 C 0.140 3.860 21 N -0.219 5.219 22 C -0.093 4.093 23 C 0.348 3.652 24 O -0.447 6.447 25 N -0.405 5.405 26 C 0.292 3.708 27 O -0.217 6.217 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.252 0.748 41 H 0.259 0.741 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.156 0.844 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.185 -21.686 1.950 21.805 hybrid contribution 0.241 1.273 -0.033 1.296 sum 1.425 -20.413 1.916 20.552 Atomic orbital electron populations 1.20336 0.83116 0.95259 0.97066 1.44145 1.01933 1.01760 1.85424 1.19500 0.98252 0.86356 1.35105 0.90949 1.25619 0.99685 1.01284 0.98192 1.70316 1.26697 1.27167 1.33067 0.85443 0.78458 0.80760 0.76987 1.21965 1.22839 1.18913 1.21184 0.96793 0.87023 0.93240 1.23237 0.85423 0.98012 0.96012 1.87951 1.30786 1.87785 1.24561 1.22716 0.95727 0.99868 0.84055 1.21264 0.92879 0.88512 0.96418 1.45539 1.16732 1.34172 1.39318 1.17437 0.81263 0.82977 0.81683 1.90855 1.60682 1.57528 1.35306 1.19587 0.99614 1.05443 1.08380 1.23544 0.96355 0.80978 0.85108 1.46272 1.20283 1.23802 1.31579 1.22766 0.98577 1.00502 0.87439 1.17550 0.79730 0.85216 0.82657 1.90964 1.67434 1.26921 1.59430 1.69609 1.36665 1.16117 1.18133 1.20366 0.85782 0.83076 0.81560 1.85276 1.39199 1.52311 1.44918 0.98172 0.98176 0.94952 0.94725 0.91214 0.91275 0.96667 0.90679 0.93188 0.89382 0.93897 0.88897 0.74802 0.74107 0.87743 0.89654 0.84407 0.71385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.05 8.69 127.77 1.11 10.16 16 2 N -0.61 -28.62 2.88 -726.94 -2.09 -30.72 16 3 C -0.26 -13.76 9.60 84.03 0.81 -12.95 16 4 H 0.07 3.65 7.92 -2.91 -0.02 3.63 16 5 C -0.05 -2.86 4.85 84.86 0.41 -2.45 16 6 N -0.93 -55.02 11.29 21.65 0.24 -54.77 16 7 Si 0.95 44.48 29.61 68.60 2.03 46.51 16 8 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 C 0.14 4.86 6.12 86.38 0.53 5.39 16 12 C 0.05 1.54 6.28 71.98 0.45 1.99 16 13 O -0.39 -11.75 9.85 -148.98 -1.47 -13.21 16 14 C 0.05 1.18 6.07 71.98 0.44 1.62 16 15 C 0.13 3.09 6.06 86.38 0.52 3.61 16 16 N -0.70 -12.78 5.46 -466.48 -2.54 -15.32 16 17 C 0.58 13.51 7.75 86.63 0.67 14.18 16 18 O -0.56 -18.81 15.33 16.13 0.25 -18.56 16 19 C -0.32 -5.76 5.90 -19.91 -0.12 -5.88 16 20 C 0.28 2.55 9.90 84.24 0.83 3.38 16 21 N -0.51 -6.61 2.96 -679.93 -2.01 -8.62 16 22 C 0.05 0.23 10.35 127.77 1.32 1.55 16 23 C 0.65 15.78 8.32 179.61 1.49 17.27 16 24 O -0.57 -17.93 16.67 -5.01 -0.08 -18.02 16 25 N -0.64 -16.28 10.38 -438.20 -4.55 -20.83 16 26 C 0.49 10.94 7.92 85.59 0.68 11.62 16 27 O -0.42 -9.16 11.79 -62.70 -0.74 -9.90 16 28 H 0.00 0.00 7.47 -2.39 -0.02 -0.02 16 29 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 30 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 31 H 0.24 14.24 8.31 -92.70 -0.77 13.47 16 32 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 33 H 0.07 1.98 7.87 -2.39 -0.02 1.96 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.41 4.16 6.58 -92.71 -0.61 3.55 16 41 H 0.24 -0.58 6.49 -2.91 -0.02 -0.60 16 42 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.08 0.81 7.36 -2.38 -0.02 0.80 16 44 H 0.14 -0.46 8.02 -2.39 -0.02 -0.48 16 45 H 0.43 5.37 8.98 -74.06 -0.67 4.70 16 Total: -1.00 -91.00 384.63 -2.05 -93.05 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -0.23 Total: 0.90 kcal Atomic # 6 Polarization: 40.34 SS G_CDS: 9.15 Total: 49.50 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -10.96 Total: -130.26 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -2.04 Total: -59.69 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -91.00 -2.05 -93.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277535484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.587 kcal (2) G-P(sol) polarization free energy of solvation -91.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds