Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 H 1.08998 * 109.47344 * 305.00072 * 4 3 2 6 6 O 1.42909 * 109.47082 * 64.99870 * 4 3 2 7 7 C 1.53001 * 109.47095 * 184.99556 * 4 3 2 8 8 N 1.46902 * 109.47007 * 179.97438 * 7 4 3 9 9 C 1.46899 * 110.99925 * 180.02562 * 8 7 4 10 10 C 1.50699 * 109.47431 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99728 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00004 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99884 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99614 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00122 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00309 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00129 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47004 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47174 * 120.00052 * 17 15 13 20 20 H 1.48500 * 109.47134 * 240.00099 * 17 15 13 21 21 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 22 22 O 1.21283 * 120.00089 * 179.97438 * 21 2 1 23 23 C 1.50702 * 120.00335 * 0.02562 * 21 2 1 24 24 C 1.50705 * 109.47082 * 179.97438 * 23 21 2 25 25 C 1.41377 * 126.79961 * 124.71070 * 24 23 21 26 26 C 1.35448 * 103.98331 * 179.88756 * 25 24 23 27 27 O 1.34031 * 106.44878 * 0.36884 * 26 25 24 28 28 N 1.20921 * 111.56459 * 359.74730 * 27 26 25 29 29 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 32 32 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 33 33 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 34 34 H 0.96701 * 113.99408 * 59.99630 * 6 4 3 35 35 H 1.08998 * 109.47446 * 300.00454 * 7 4 3 36 36 H 1.09003 * 109.46558 * 60.00321 * 7 4 3 37 37 H 1.00900 * 110.99727 * 56.05235 * 8 7 4 38 38 H 1.09005 * 109.47221 * 300.00514 * 9 8 7 39 39 H 1.09005 * 109.47084 * 59.99840 * 9 8 7 40 40 H 0.97000 * 120.00272 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00629 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.47188 * 299.99755 * 23 21 2 43 43 H 1.08996 * 109.47042 * 59.99980 * 23 21 2 44 44 H 1.08001 * 128.00730 * 0.02562 * 25 24 23 45 45 H 1.08008 * 126.77757 * 180.09438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7548 1.9815 6 8 3.3210 0.7723 2.0814 7 6 3.1062 3.0937 1.4443 8 7 3.3505 3.5180 2.8294 9 6 3.9783 4.8454 2.8704 10 6 4.2136 5.2458 4.3040 11 8 3.8896 4.4991 5.2032 12 7 4.7829 6.4342 4.5870 13 6 4.9965 6.7987 5.8913 14 1 4.7080 6.1337 6.6919 15 6 5.5840 8.0235 6.1831 16 7 5.9354 8.8325 5.2089 17 14 5.8743 8.5205 7.9603 18 1 5.3938 7.4418 8.8607 19 1 7.3261 8.7398 8.1821 20 1 5.1342 9.7747 8.2507 21 6 2.1388 -1.1672 -0.0005 22 8 3.3517 -1.1673 -0.0010 23 6 1.3853 -2.4723 -0.0017 24 6 2.3646 -3.6178 -0.0027 25 6 2.4250 -4.6812 0.9269 26 6 3.4620 -5.4368 0.4930 27 8 3.9463 -4.8263 -0.5975 28 7 3.3260 -3.8211 -0.8564 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 3.1500 1.1383 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 4.1837 0.6809 1.6541 35 1 4.0525 3.0492 0.9053 36 1 2.4438 3.8091 0.9570 37 1 3.9094 2.8379 3.3226 38 1 4.9309 4.8133 2.3414 39 1 3.3218 5.5727 2.3926 40 1 5.0417 7.0316 3.8679 41 1 6.3452 9.6877 5.4126 42 1 0.7583 -2.5307 0.8880 43 1 0.7590 -2.5294 -0.8919 44 1 1.7897 -4.8527 1.7833 45 1 3.8293 -6.3487 0.9403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278737550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = -48.635713 kcal Electronic energy + Delta-G solvation = -28670.783959 eV Core-core repulsion = 24306.339260 eV Total energy + Delta-G solvation = -4364.444699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.19504 -40.29994 -38.41965 -37.67908 -35.65883 -34.92993 -34.62695 -33.74067 -32.04968 -31.24870 -31.02171 -29.51071 -27.72695 -26.57328 -24.90103 -23.50396 -23.32804 -21.94685 -21.52984 -19.56442 -19.22994 -18.09227 -17.94265 -17.87536 -17.28357 -16.96411 -16.44480 -16.12131 -15.84305 -15.43546 -15.12720 -14.87056 -14.52015 -14.42687 -13.99136 -13.74007 -13.63354 -13.49282 -13.36448 -13.23869 -12.94984 -12.82782 -12.62376 -12.51565 -11.96347 -11.72131 -11.55885 -11.53917 -11.49558 -11.13486 -11.01938 -10.53802 -10.35541 -10.32523 -10.20411 -9.97957 -9.87843 -9.50047 -8.88110 -8.42075 -8.03832 -7.93641 -6.39852 -3.80518 1.26353 1.87877 2.38477 2.65284 3.00957 3.17907 3.28206 3.35955 3.75255 3.93097 4.00802 4.09062 4.25779 4.33394 4.46397 4.62907 4.74092 4.84120 4.87827 4.89786 4.91214 5.02564 5.07350 5.10490 5.15456 5.23644 5.27963 5.28892 5.36737 5.42423 5.61579 5.66475 5.79607 5.97778 6.02359 6.10163 6.28532 7.00464 7.21738 7.57422 7.66417 7.74692 7.91332 8.02352 8.08893 8.63674 9.20181 9.56554 10.08349 10.78054 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.001692 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.340162 B =16539.868297 C =17189.100932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.612 5.612 3 C 0.085 3.915 4 C 0.095 3.905 5 H 0.106 0.894 6 O -0.548 6.548 7 C 0.029 3.971 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.104 0.896 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.522 3.478 22 O -0.518 6.518 23 C -0.060 4.060 24 C 0.023 3.977 25 C -0.228 4.228 26 C -0.062 4.062 27 O 0.103 5.897 28 N -0.338 5.338 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.374 0.626 35 H 0.029 0.971 36 H 0.079 0.921 37 H 0.357 0.643 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.172 0.828 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 -23.908 -16.312 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.346 5.346 3 C -0.038 4.038 4 C 0.034 3.966 5 H 0.124 0.876 6 O -0.353 6.353 7 C -0.102 4.102 8 N -0.297 5.297 9 C -0.083 4.083 10 C 0.227 3.773 11 O -0.465 6.465 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.308 3.692 22 O -0.392 6.392 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.249 4.249 26 C -0.144 4.144 27 O 0.034 5.966 28 N -0.039 5.039 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.221 0.779 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.177 0.823 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.189 0.811 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.923 -23.376 -16.288 30.886 hybrid contribution 1.072 0.484 0.539 1.293 sum -10.852 -22.893 -15.749 29.831 Atomic orbital electron populations 1.21897 0.79242 1.03355 1.02439 1.47630 1.06914 1.05705 1.74397 1.22236 0.98608 0.84964 0.98039 1.22355 0.94913 0.87099 0.92192 0.87573 1.86614 1.29322 1.62764 1.56611 1.22583 0.99505 0.96744 0.91329 1.59993 1.53989 1.03776 1.11975 1.21688 0.97663 0.92085 0.96816 1.19809 0.84031 0.83762 0.89747 1.90533 1.55461 1.52851 1.47643 1.41868 1.53587 1.15903 1.08823 1.19766 1.36994 1.01951 0.84053 0.87861 1.25264 0.97122 0.95876 0.99774 1.69619 1.42222 1.10668 1.31904 0.85794 0.77881 0.78547 0.82085 1.19209 1.20788 1.20753 1.20173 0.88064 0.84706 0.76212 1.90720 1.13670 1.86893 1.47944 1.20014 0.95944 0.88381 1.05665 1.22864 0.97823 0.98480 0.94496 1.22700 1.02581 0.96267 1.03381 1.26005 0.96647 1.01140 0.90561 1.84871 1.46328 1.27579 1.37832 1.73877 1.06553 1.00712 1.22741 0.92011 0.90631 0.90991 0.89515 0.89432 0.77879 0.95240 0.90296 0.82281 0.93985 0.89686 0.77484 0.91957 0.86606 0.87205 0.81074 0.76738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.29 59.85 0.62 0.96 16 2 N -0.61 -5.18 2.86 -181.57 -0.52 -5.70 16 3 C 0.09 0.75 5.16 -4.04 -0.02 0.73 16 4 C 0.10 1.07 3.48 -26.73 -0.09 0.98 16 5 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 6 O -0.55 -7.57 11.54 -42.91 -0.50 -8.07 16 7 C 0.03 0.36 5.39 -3.82 -0.02 0.33 16 8 N -0.66 -11.28 6.13 -115.05 -0.70 -11.98 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.78 7.82 -10.99 -0.09 10.70 16 11 O -0.58 -16.42 15.78 5.55 0.09 -16.33 16 12 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 13 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 14 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 17 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 C 0.52 5.59 7.29 -10.99 -0.08 5.51 16 22 O -0.52 -7.65 14.15 -2.12 -0.03 -7.68 16 23 C -0.06 -0.45 4.85 -29.03 -0.14 -0.59 16 24 C 0.02 0.23 6.10 -82.10 -0.50 -0.27 16 25 C -0.23 -1.66 11.12 -39.38 -0.44 -2.09 16 26 C -0.06 -0.40 12.30 29.74 0.37 -0.04 16 27 O 0.10 1.05 11.20 17.20 0.19 1.24 16 28 N -0.34 -4.10 11.46 33.42 0.38 -3.72 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.26 7.89 -51.93 -0.41 -0.15 16 31 H 0.07 0.19 6.44 -51.93 -0.33 -0.15 16 32 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 33 H 0.09 0.56 7.89 -51.93 -0.41 0.15 16 34 H 0.37 4.73 8.75 45.56 0.40 5.13 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.36 6.63 7.82 -39.29 -0.31 6.32 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.12 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.11 0.56 7.40 -51.93 -0.38 0.18 16 44 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.22 0.40 8.06 -52.48 -0.42 -0.02 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -38.41 387.53 -5.74 -44.15 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -5.47 Total: 15.86 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.67 Total: 8.94 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.17 Total: -60.32 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.25 Total: -30.84 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.41 -5.74 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278737550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.484 kcal (2) G-P(sol) polarization free energy of solvation -38.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds