Wall clock time and date at job start Sat Apr 11 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 H 1.08998 * 109.47344 * 305.00072 * 4 3 2 6 6 O 1.42909 * 109.47082 * 64.99870 * 4 3 2 7 7 C 1.53001 * 109.47095 * 184.99556 * 4 3 2 8 8 N 1.46902 * 109.47007 * 179.97438 * 7 4 3 9 9 C 1.46899 * 110.99925 * 180.02562 * 8 7 4 10 10 C 1.50699 * 109.47431 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99728 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00004 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99884 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99614 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00122 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00309 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00129 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47004 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47174 * 120.00052 * 17 15 13 20 20 H 1.48500 * 109.47134 * 240.00099 * 17 15 13 21 21 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 22 22 O 1.21283 * 120.00089 * 179.97438 * 21 2 1 23 23 C 1.50702 * 120.00335 * 0.02562 * 21 2 1 24 24 C 1.50705 * 109.47082 * 179.97438 * 23 21 2 25 25 C 1.41377 * 126.79961 * 124.71070 * 24 23 21 26 26 C 1.35448 * 103.98331 * 179.88756 * 25 24 23 27 27 O 1.34031 * 106.44878 * 0.36884 * 26 25 24 28 28 N 1.20921 * 111.56459 * 359.74730 * 27 26 25 29 29 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 31 31 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 32 32 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 33 33 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 34 34 H 0.96701 * 113.99408 * 59.99630 * 6 4 3 35 35 H 1.08998 * 109.47446 * 300.00454 * 7 4 3 36 36 H 1.09003 * 109.46558 * 60.00321 * 7 4 3 37 37 H 1.00900 * 110.99727 * 56.05235 * 8 7 4 38 38 H 1.09005 * 109.47221 * 300.00514 * 9 8 7 39 39 H 1.09005 * 109.47084 * 59.99840 * 9 8 7 40 40 H 0.97000 * 120.00272 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00629 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.47188 * 299.99755 * 23 21 2 43 43 H 1.08996 * 109.47042 * 59.99980 * 23 21 2 44 44 H 1.08001 * 128.00730 * 0.02562 * 25 24 23 45 45 H 1.08008 * 126.77757 * 180.09438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7548 1.9815 6 8 3.3210 0.7723 2.0814 7 6 3.1062 3.0937 1.4443 8 7 3.3505 3.5180 2.8294 9 6 3.9783 4.8454 2.8704 10 6 4.2136 5.2458 4.3040 11 8 3.8896 4.4991 5.2032 12 7 4.7829 6.4342 4.5870 13 6 4.9965 6.7987 5.8913 14 1 4.7080 6.1337 6.6919 15 6 5.5840 8.0235 6.1831 16 7 5.9354 8.8325 5.2089 17 14 5.8743 8.5205 7.9603 18 1 5.3938 7.4418 8.8607 19 1 7.3261 8.7398 8.1821 20 1 5.1342 9.7747 8.2507 21 6 2.1388 -1.1672 -0.0005 22 8 3.3517 -1.1673 -0.0010 23 6 1.3853 -2.4723 -0.0017 24 6 2.3646 -3.6178 -0.0027 25 6 2.4250 -4.6812 0.9269 26 6 3.4620 -5.4368 0.4930 27 8 3.9463 -4.8263 -0.5975 28 7 3.3260 -3.8211 -0.8564 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 3.1500 1.1383 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 4.1837 0.6809 1.6541 35 1 4.0525 3.0492 0.9053 36 1 2.4438 3.8091 0.9570 37 1 3.9094 2.8379 3.3226 38 1 4.9309 4.8133 2.3414 39 1 3.3218 5.5727 2.3926 40 1 5.0417 7.0316 3.8679 41 1 6.3452 9.6877 5.4126 42 1 0.7583 -2.5307 0.8880 43 1 0.7590 -2.5294 -0.8919 44 1 1.7897 -4.8527 1.7833 45 1 3.8293 -6.3487 0.9403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278737550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:28 Heat of formation + Delta-G solvation = -81.482280 kcal Electronic energy + Delta-G solvation = -28672.208293 eV Core-core repulsion = 24306.339260 eV Total energy + Delta-G solvation = -4365.869033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.83793 -41.04885 -40.19732 -38.81368 -36.51460 -36.11812 -35.59933 -35.49973 -33.29389 -32.63472 -31.92515 -30.35040 -28.73858 -27.52287 -26.41195 -24.74478 -24.01985 -22.80769 -22.28976 -21.11877 -20.21497 -19.93911 -18.73086 -18.60129 -18.24488 -17.87278 -17.45338 -17.21987 -17.00199 -16.68637 -16.29981 -15.95310 -15.93742 -15.69723 -15.35125 -14.98905 -14.54026 -14.36225 -14.19586 -14.08179 -13.95619 -13.70798 -13.50277 -13.28127 -13.25426 -13.18774 -12.99958 -12.78102 -12.53481 -12.42922 -12.19751 -12.12758 -12.05061 -11.53894 -11.31013 -11.17811 -10.71772 -10.49762 -10.37774 -10.03996 -9.57183 -9.36409 -8.48862 -5.97901 0.70310 1.28912 1.35303 1.40553 1.55132 1.64954 2.02122 2.04255 2.28044 2.53774 2.87578 3.17991 3.19793 3.40141 3.51823 3.60415 3.80001 3.93546 4.09538 4.13776 4.20775 4.29364 4.32219 4.37876 4.43708 4.45077 4.48231 4.52638 4.63232 4.64867 4.69995 4.77336 4.88053 4.99571 5.11182 5.19939 5.39018 5.48981 5.85650 6.07558 6.32233 6.36378 6.57817 6.72968 7.10359 7.19906 7.42787 7.53264 8.09057 8.68729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.001692 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.340162 B =16539.868297 C =17189.100932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.611 5.611 3 C 0.091 3.909 4 C 0.101 3.899 5 H 0.099 0.901 6 O -0.570 6.570 7 C 0.032 3.968 8 N -0.680 5.680 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.269 1.269 21 C 0.510 3.490 22 O -0.569 6.569 23 C -0.057 4.057 24 C 0.007 3.993 25 C -0.239 4.239 26 C -0.054 4.054 27 O 0.081 5.919 28 N -0.385 5.385 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.375 0.625 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.343 0.657 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.143 0.857 43 H 0.134 0.866 44 H 0.199 0.801 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 -23.975 -16.810 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.343 5.343 3 C -0.033 4.033 4 C 0.040 3.960 5 H 0.117 0.883 6 O -0.375 6.375 7 C -0.098 4.098 8 N -0.313 5.313 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.194 1.194 21 C 0.299 3.701 22 O -0.448 6.448 23 C -0.097 4.097 24 C -0.152 4.152 25 C -0.260 4.260 26 C -0.134 4.134 27 O 0.015 5.985 28 N -0.090 5.090 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.223 0.777 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.161 0.839 43 H 0.152 0.848 44 H 0.216 0.784 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -13.402 -23.431 -16.833 31.812 hybrid contribution 1.477 0.465 0.694 1.697 sum -11.925 -22.966 -16.139 30.497 Atomic orbital electron populations 1.22188 0.76702 1.05454 1.03258 1.47770 1.08492 1.04911 1.73128 1.22143 0.98854 0.86074 0.96245 1.22367 0.93901 0.86250 0.93469 0.88305 1.86581 1.29797 1.63570 1.57578 1.22690 1.00596 0.97677 0.88790 1.60013 1.53493 1.02872 1.14881 1.21561 0.99517 0.93355 0.92310 1.20919 0.82121 0.82553 0.92117 1.90498 1.56867 1.53903 1.49895 1.41929 1.54112 1.16697 1.08207 1.19710 1.39279 1.02721 0.84790 0.90458 1.26060 0.96065 0.95208 1.03950 1.69672 1.41840 1.10964 1.33559 0.84853 0.78293 0.78139 0.76925 1.19908 1.19545 1.19382 1.20806 0.87777 0.86183 0.75374 1.90693 1.15924 1.87720 1.50437 1.20169 0.95553 0.85908 1.08038 1.23450 0.97629 0.99560 0.94603 1.23130 1.03350 0.95645 1.03868 1.26879 0.95812 1.01705 0.89034 1.84803 1.46766 1.27619 1.39299 1.73868 1.08196 1.02117 1.24834 0.91753 0.88944 0.88656 0.91044 0.86319 0.77711 0.94186 0.88017 0.83771 0.91861 0.87247 0.76900 0.91233 0.83915 0.84791 0.78404 0.72568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.29 127.77 1.31 1.74 16 2 N -0.61 -9.37 2.86 -846.74 -2.42 -11.79 16 3 C 0.09 1.47 5.16 86.38 0.45 1.92 16 4 C 0.10 2.16 3.48 30.59 0.11 2.27 16 5 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 6 O -0.57 -16.00 11.54 -141.64 -1.64 -17.64 16 7 C 0.03 0.73 5.39 86.30 0.47 1.19 16 8 N -0.68 -22.59 6.13 -517.91 -3.17 -25.77 16 9 C 0.06 2.29 6.17 85.56 0.53 2.82 16 10 C 0.44 21.53 7.82 87.66 0.69 22.22 16 11 O -0.63 -36.34 15.78 -3.06 -0.05 -36.39 16 12 N -0.57 -30.14 5.29 -306.99 -1.62 -31.76 16 13 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 16 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 17 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C 0.51 10.69 7.29 87.66 0.64 11.33 16 22 O -0.57 -17.40 14.15 4.30 0.06 -17.34 16 23 C -0.06 -0.77 4.85 29.10 0.14 -0.63 16 24 C 0.01 0.13 6.10 43.58 0.27 0.40 16 25 C -0.24 -3.16 11.12 22.40 0.25 -2.91 16 26 C -0.05 -0.64 12.30 67.17 0.83 0.19 16 27 O 0.08 1.69 11.20 71.72 0.80 2.49 16 28 N -0.39 -9.67 11.46 -49.57 -0.57 -10.24 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.31 7.89 -2.38 -0.02 0.30 16 31 H 0.09 0.18 6.44 -2.39 -0.02 0.16 16 32 H 0.07 1.42 7.42 -2.39 -0.02 1.40 16 33 H 0.12 1.17 7.89 -2.39 -0.02 1.15 16 34 H 0.38 9.97 8.75 -74.06 -0.65 9.33 16 35 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.34 12.92 7.82 -89.69 -0.70 12.22 16 38 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 41 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.14 1.06 8.10 -2.39 -0.02 1.05 16 43 H 0.13 1.09 7.40 -2.39 -0.02 1.07 16 44 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 45 H 0.26 0.31 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -87.39 387.53 -0.37 -87.76 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -1.02 Total: 43.33 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 6.95 Total: 21.57 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -7.50 Total: -129.43 kcal Atomic # 8 Polarization: -68.06 SS G_CDS: -0.82 Total: -68.88 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -87.39 -0.37 -87.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278737550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.276 kcal (2) G-P(sol) polarization free energy of solvation -87.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds