Wall clock time and date at job start Sat Apr 11 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46495 * 119.99557 * 2 1 4 4 C 1.53000 * 109.47268 * 269.99777 * 3 2 1 5 5 O 1.42903 * 109.47080 * 65.00146 * 4 3 2 6 6 C 1.42895 * 114.00106 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47098 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47339 * 65.00240 * 7 6 5 9 9 C 1.36936 * 120.00332 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99542 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99913 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00216 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99786 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47051 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47463 * 119.99685 * 13 11 9 16 16 H 1.48503 * 109.46925 * 239.99799 * 13 11 9 17 17 C 1.34774 * 119.99853 * 179.97438 * 2 1 3 18 18 O 1.21275 * 119.99841 * 179.97438 * 17 2 1 19 19 C 1.50697 * 120.00145 * 0.02562 * 17 2 1 20 20 N 1.46497 * 109.47347 * 179.97438 * 19 17 2 21 21 C 1.36157 * 119.85706 * 269.97683 * 20 19 17 22 22 C 1.35538 * 119.26510 * 179.97438 * 21 20 19 23 23 C 1.40741 * 118.99821 * 0.05103 * 22 21 20 24 24 O 1.35154 * 120.16611 * 180.24861 * 23 22 21 25 25 N 1.32434 * 119.66600 * 359.97081 * 23 22 21 26 26 C 1.33264 * 120.73152 * 0.02562 * 25 23 22 27 27 O 1.21976 * 119.47840 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.46903 * 269.99843 * 1 2 3 29 29 H 1.08995 * 109.47165 * 30.00042 * 1 2 3 30 30 H 1.08999 * 109.47258 * 150.00015 * 1 2 3 31 31 H 1.08997 * 109.47886 * 30.00100 * 3 2 1 32 32 H 1.09003 * 109.47038 * 150.00037 * 3 2 1 33 33 H 1.08997 * 109.47334 * 185.00666 * 4 3 2 34 34 H 1.09007 * 109.46881 * 305.00731 * 4 3 2 35 35 H 1.09001 * 109.47592 * 300.00737 * 6 5 4 36 36 H 1.09009 * 109.46981 * 60.00503 * 6 5 4 37 37 H 1.09004 * 109.47389 * 185.00188 * 7 6 5 38 38 H 1.08995 * 109.47299 * 305.00202 * 7 6 5 39 39 H 0.97000 * 119.99913 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00096 * 179.97438 * 12 11 9 41 41 H 1.09005 * 109.47514 * 59.99709 * 19 17 2 42 42 H 1.09007 * 109.47272 * 299.99972 * 19 17 2 43 43 H 1.08004 * 120.36751 * 359.97438 * 21 20 19 44 44 H 1.08001 * 120.50377 * 180.02562 * 22 21 20 45 45 H 0.96699 * 114.00080 * 179.72466 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0814 6 6 1.3324 2.4175 -3.4402 7 6 -0.0565 2.6916 -4.0202 8 7 -0.6651 3.8231 -3.3162 9 6 -1.9171 4.2538 -3.6659 10 1 -2.4556 3.7596 -4.4609 11 6 -2.4934 5.3262 -2.9991 12 7 -1.8369 5.9288 -2.0306 13 14 -4.2016 5.9133 -3.4757 14 1 -4.7218 5.0743 -4.5850 15 1 -5.1076 5.8032 -2.3043 16 1 -4.1330 7.3296 -3.9169 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3855 -2.4723 0.0005 20 7 2.3374 -3.5858 0.0005 21 6 2.7775 -4.1013 -1.1803 22 6 3.6586 -5.1312 -1.1663 23 6 4.0936 -5.6401 0.0716 24 8 4.9757 -6.6633 0.1131 25 7 3.6385 -5.1077 1.1956 26 6 2.7724 -4.0953 1.1678 27 8 2.3684 -3.6220 2.2169 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 3.0732 2.6064 -1.4438 34 1 2.9642 0.9131 -1.9815 35 1 1.9298 3.3283 -3.4826 36 1 1.8211 1.6351 -4.0210 37 1 0.0327 2.9289 -5.0803 38 1 -0.6826 1.8079 -3.8971 39 1 -0.1810 4.2677 -2.6029 40 1 -2.2395 6.6784 -1.5650 41 1 0.7590 -2.5303 -0.8897 42 1 0.7584 -2.5298 0.8903 43 1 2.4284 -3.6942 -2.1178 44 1 4.0211 -5.5551 -2.0911 45 1 5.2163 -6.9391 1.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279423805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:34 Heat of formation + Delta-G solvation = -80.362893 kcal Electronic energy + Delta-G solvation = -29432.418887 eV Core-core repulsion = 25066.598394 eV Total energy + Delta-G solvation = -4365.820493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20130 -40.11821 -38.97485 -37.82357 -37.01004 -35.76640 -34.91810 -34.43057 -31.86857 -31.53439 -30.44043 -28.41944 -27.64571 -26.42927 -25.22015 -23.89667 -23.55490 -22.77747 -21.20212 -20.13359 -19.77193 -18.52260 -17.95587 -17.57683 -17.19856 -16.58340 -16.39467 -16.08506 -16.03552 -15.77836 -15.29448 -15.05111 -14.65610 -14.43233 -14.35474 -14.17060 -13.75494 -13.65583 -13.35862 -13.14390 -12.98780 -12.78492 -12.56858 -12.45166 -12.30595 -11.86811 -11.73088 -11.44210 -11.12594 -10.96175 -10.84576 -10.71438 -10.54978 -10.19408 -10.10643 -10.02422 -9.74906 -9.32447 -8.96294 -8.92061 -8.83618 -6.92549 -5.77145 -3.05578 0.26976 1.33132 1.87976 2.25675 2.75993 2.79781 3.41538 3.45905 3.47016 3.49458 3.83288 3.91691 4.06282 4.12923 4.29177 4.58048 4.59548 4.75105 4.93725 4.97750 5.04206 5.07555 5.17060 5.37575 5.42761 5.49139 5.52758 5.57471 5.64553 5.65313 5.76931 5.85012 5.93260 5.96793 6.28750 6.29973 6.54669 6.63742 6.67819 7.09797 7.43225 7.50143 7.68117 7.80293 7.84465 8.41321 9.53070 10.11225 10.46926 11.45586 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.002008 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.640407 B =13944.284444 C =14097.852465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.119 3.881 4 C 0.046 3.954 5 O -0.371 6.371 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.501 3.499 18 O -0.536 6.536 19 C 0.076 3.924 20 N -0.511 5.511 21 C 0.213 3.787 22 C -0.286 4.286 23 C 0.459 3.541 24 O -0.448 6.448 25 N -0.614 5.614 26 C 0.662 3.338 27 O -0.530 6.530 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.025 0.975 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.183 0.817 44 H 0.166 0.834 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.254 -23.454 0.550 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C -0.003 4.003 4 C -0.032 4.032 5 O -0.290 6.290 6 C -0.018 4.018 7 C 0.028 3.972 8 N -0.372 5.372 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.580 5.580 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.287 3.713 18 O -0.413 6.413 19 C -0.050 4.050 20 N -0.227 5.227 21 C 0.078 3.922 22 C -0.313 4.313 23 C 0.258 3.742 24 O -0.243 6.243 25 N -0.371 5.371 26 C 0.364 3.636 27 O -0.404 6.404 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.200 0.800 44 H 0.183 0.817 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 11.423 -23.309 1.539 26.003 hybrid contribution -0.634 0.751 -0.415 1.067 sum 10.789 -22.557 1.124 25.030 Atomic orbital electron populations 1.22034 0.77977 1.04938 1.02203 1.47707 1.07884 1.05319 1.72007 1.21608 0.98383 0.84454 0.95865 1.22836 0.87597 0.99110 0.93640 1.87991 1.27756 1.87478 1.25776 1.22782 0.99301 0.97455 0.82262 1.20678 0.90146 0.91900 0.94512 1.42293 1.17767 1.34890 1.42253 1.19266 0.92643 1.10826 1.14300 0.91224 1.24738 0.98634 0.98925 0.98727 1.69675 1.37718 1.24896 1.25693 0.86132 0.84297 0.78331 0.77503 1.20606 1.21872 1.21930 1.20568 0.88229 0.85493 0.77029 1.90737 1.13541 1.87118 1.49938 1.21911 0.91444 0.83793 1.07851 1.46064 1.39262 1.29721 1.07652 1.22350 0.89382 0.89734 0.90749 1.20596 1.07977 1.04355 0.98368 1.20430 0.81575 0.82232 0.90004 1.84986 1.56111 1.45680 1.37491 1.69648 1.22022 1.17717 1.27722 1.17267 0.81322 0.82065 0.82993 1.91015 1.58672 1.61134 1.29626 0.92184 0.88149 0.91453 0.88761 0.88643 0.92434 0.93666 0.93371 0.94058 0.95127 0.95733 0.77929 0.93605 0.85524 0.84772 0.80011 0.81672 0.72592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.06 59.85 0.60 1.29 16 2 N -0.60 -6.83 2.84 -181.57 -0.52 -7.35 16 3 C 0.12 1.45 5.81 -4.04 -0.02 1.43 16 4 C 0.05 0.60 6.28 37.16 0.23 0.83 16 5 O -0.37 -5.86 9.11 -35.23 -0.32 -6.18 16 6 C 0.06 0.92 6.07 37.15 0.23 1.15 16 7 C 0.16 3.01 6.64 -4.05 -0.03 2.98 16 8 N -0.73 -18.12 5.55 -59.91 -0.33 -18.46 16 9 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 13 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 C 0.50 6.00 7.74 -10.99 -0.09 5.92 16 18 O -0.54 -8.33 16.01 5.56 0.09 -8.24 16 19 C 0.08 0.65 4.38 -5.20 -0.02 0.63 16 20 N -0.51 -5.07 2.08 -123.16 -0.26 -5.32 16 21 C 0.21 1.33 10.40 -16.60 -0.17 1.16 16 22 C -0.29 -1.79 10.03 -39.60 -0.40 -2.18 16 23 C 0.46 3.95 7.91 -16.35 -0.13 3.83 16 24 O -0.45 -2.67 13.55 -17.16 -0.23 -2.90 16 25 N -0.61 -7.65 10.40 -16.72 -0.17 -7.82 16 26 C 0.66 9.27 8.34 -88.43 -0.74 8.53 16 27 O -0.53 -9.40 16.72 4.94 0.08 -9.32 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.25 7.11 -51.93 -0.37 0.88 16 30 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 31 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 32 H 0.10 1.17 7.42 -51.93 -0.39 0.79 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.39 10.28 7.67 -40.82 -0.31 9.97 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.13 0.54 7.29 -51.93 -0.38 0.16 16 42 H 0.13 1.17 7.35 -51.93 -0.38 0.79 16 43 H 0.18 0.37 8.06 -52.48 -0.42 -0.05 16 44 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.42 1.10 8.98 45.56 0.41 1.51 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -40.11 388.94 -6.40 -46.52 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.52 Total: 5.00 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: -0.78 Total: 18.33 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.55 Total: -66.10 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.38 Total: -26.64 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.11 -6.40 -46.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279423805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.848 kcal (2) G-P(sol) polarization free energy of solvation -40.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds