Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48497 * 109.46913 * 275.36188 * 3 2 1 5 5 H 1.48503 * 109.46771 * 35.35806 * 3 2 1 6 6 H 1.48494 * 109.47198 * 155.35995 * 3 2 1 7 7 C 1.38807 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00204 * 338.38419 * 7 2 1 9 9 N 1.36938 * 120.00005 * 158.38724 * 7 2 1 10 10 C 1.46682 * 121.32924 * 324.29346 * 9 7 2 11 11 C 1.50813 * 109.69056 * 135.69833 * 10 9 7 12 12 C 1.38836 * 117.81749 * 191.35950 * 11 10 9 13 13 C 1.37951 * 120.51188 * 180.46863 * 12 11 10 14 14 C 1.38271 * 119.71778 * 0.07625 * 13 12 11 15 15 C 1.37911 * 119.82147 * 359.76252 * 14 13 12 16 16 C 1.37671 * 122.34267 * 11.45107 * 11 10 9 17 17 C 1.50595 * 122.85956 * 358.57383 * 16 11 10 18 18 C 1.47233 * 121.33202 * 144.31688 * 9 7 2 19 19 H 1.08996 * 109.77576 * 124.54965 * 18 9 7 20 20 C 1.53003 * 109.77362 * 3.80245 * 18 9 7 21 21 N 1.46497 * 109.47412 * 55.00033 * 20 18 9 22 22 C 1.34775 * 120.00175 * 179.97438 * 21 20 18 23 23 O 1.21277 * 119.99653 * 0.02562 * 22 21 20 24 24 C 1.50698 * 120.00062 * 179.97438 * 22 21 20 25 25 C 1.50699 * 109.47314 * 180.02562 * 24 22 21 26 26 C 1.41383 * 126.57650 * 269.71395 * 25 24 22 27 27 C 1.34514 * 106.83719 * 179.83227 * 26 25 24 28 28 O 1.34303 * 108.42175 * 0.42632 * 27 26 25 29 29 C 1.34303 * 109.47776 * 359.72741 * 28 27 26 30 30 H 0.97001 * 120.00260 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.43598 * 255.76529 * 10 9 7 32 32 H 1.08996 * 109.43313 * 15.67779 * 10 9 7 33 33 H 1.08004 * 119.74341 * 0.48587 * 12 11 10 34 34 H 1.07998 * 120.14710 * 180.02562 * 13 12 11 35 35 H 1.07996 * 120.08451 * 179.77861 * 14 13 12 36 36 H 1.08003 * 119.70385 * 179.97438 * 15 14 13 37 37 H 1.09003 * 109.20201 * 259.87188 * 17 16 11 38 38 H 1.09002 * 109.20977 * 140.57313 * 17 16 11 39 39 H 1.09004 * 109.46795 * 294.99469 * 20 18 9 40 40 H 1.09000 * 109.46683 * 175.00024 * 20 18 9 41 41 H 0.97004 * 119.99230 * 0.02562 * 21 20 18 42 42 H 1.09008 * 109.46935 * 300.00378 * 24 22 21 43 43 H 1.09004 * 109.47101 * 59.99990 * 24 22 21 44 44 H 1.07996 * 126.57903 * 359.97438 * 26 25 24 45 45 H 1.08000 * 125.78841 * 180.11426 * 27 26 25 46 46 H 1.07997 * 125.78988 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3843 2.1118 -1.3939 5 1 1.5087 2.6173 0.8102 6 1 3.5997 1.4102 0.5837 7 6 2.0102 -1.2021 -0.0005 8 1 1.5272 -2.1046 0.3436 9 7 3.3074 -1.2436 -0.4374 10 6 3.7656 -0.4015 -1.5475 11 6 5.0973 0.2158 -1.2010 12 6 5.5750 1.2288 -2.0215 13 6 6.7912 1.8256 -1.7616 14 6 7.5407 1.4102 -0.6764 15 6 7.0657 0.4063 0.1412 16 6 5.8380 -0.1925 -0.1147 17 6 5.3721 -1.2635 0.8360 18 6 4.2977 -2.1356 0.1881 19 1 4.7488 -2.7754 -0.5703 20 6 3.6179 -2.9971 1.2543 21 7 2.4881 -3.7129 0.6564 22 6 1.7369 -4.5380 1.4123 23 8 1.9960 -4.6875 2.5876 24 6 0.5744 -5.2738 0.7973 25 6 -0.0951 -6.1225 1.8474 26 6 0.2133 -7.4643 2.1687 27 6 -0.6199 -7.8290 3.1597 28 8 -1.4183 -6.7881 3.4476 29 6 -1.1046 -5.7505 2.6548 30 1 -0.4850 0.8400 0.0004 31 1 3.8708 -1.0105 -2.4453 32 1 3.0366 0.3884 -1.7284 33 1 4.9896 1.5523 -2.8696 34 1 7.1570 2.6134 -2.4035 35 1 8.4953 1.8709 -0.4696 36 1 7.6528 0.0831 0.9881 37 1 4.9621 -0.7950 1.7308 38 1 6.2203 -1.8883 1.1159 39 1 3.2578 -2.3592 2.0615 40 1 4.3344 -3.7162 1.6515 41 1 2.2812 -3.5935 -0.2838 42 1 -0.1422 -4.5544 0.4008 43 1 0.9342 -5.9112 -0.0104 44 1 0.9736 -8.0779 1.7084 45 1 -0.6460 -8.7965 3.6389 46 1 -1.5816 -4.7816 2.6643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281063128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = 43.250412 kcal Electronic energy + Delta-G solvation = -29479.019551 eV Core-core repulsion = 25529.408596 eV Total energy + Delta-G solvation = -3949.610955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34234 -39.76026 -38.96900 -36.75333 -33.94878 -33.62534 -32.93435 -31.80216 -30.67734 -30.14183 -29.40514 -27.67726 -25.70886 -25.08600 -23.15667 -21.78099 -21.42707 -21.33484 -20.61238 -19.68707 -18.99313 -17.46837 -17.01845 -16.34860 -16.16132 -15.57386 -15.53377 -15.34723 -15.03990 -14.72082 -14.60159 -14.35328 -14.22915 -13.49163 -13.14703 -12.93081 -12.91125 -12.75066 -12.63894 -12.59398 -12.28942 -12.26664 -12.07075 -11.65452 -11.43980 -11.27426 -11.17986 -11.06773 -10.68012 -10.41043 -10.30101 -10.04415 -9.68340 -9.59603 -9.18789 -8.67563 -8.44415 -8.31957 -8.20876 -8.09633 -6.99592 -6.06105 -3.50137 1.68594 1.72548 1.97643 2.74970 3.24033 3.27124 3.33458 3.45845 3.55974 3.91836 4.08396 4.47298 4.73793 4.94011 5.02720 5.08220 5.16066 5.20111 5.22499 5.28420 5.31430 5.47213 5.59094 5.60646 5.68839 5.79022 5.81397 5.84994 5.89873 5.94761 6.02002 6.16610 6.22717 6.29492 6.31806 6.34874 6.35708 6.43793 6.51781 6.67195 6.74637 6.77522 6.81183 7.07064 7.12550 7.30169 7.35853 7.87493 8.15894 8.27357 8.82113 8.85699 9.59792 10.00712 11.06218 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.003079 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.314722 B = 9092.245748 C =10140.015234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.039 3.961 3 Si 0.862 3.138 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.258 1.258 7 C -0.285 4.285 8 H 0.113 0.887 9 N -0.600 5.600 10 C 0.168 3.832 11 C -0.082 4.082 12 C -0.125 4.125 13 C -0.130 4.130 14 C -0.132 4.132 15 C -0.127 4.127 16 C -0.056 4.056 17 C -0.096 4.096 18 C 0.158 3.842 19 H 0.050 0.950 20 C 0.138 3.862 21 N -0.703 5.703 22 C 0.512 3.488 23 O -0.551 6.551 24 C -0.073 4.073 25 C -0.156 4.156 26 C -0.198 4.198 27 C -0.053 4.053 28 O -0.180 6.180 29 C -0.026 4.026 30 H 0.263 0.737 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.412 0.588 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.198 0.802 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -8.222 -1.700 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.162 4.162 3 Si 0.692 3.308 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.182 1.182 7 C -0.412 4.412 8 H 0.130 0.870 9 N -0.325 5.325 10 C 0.043 3.957 11 C -0.083 4.083 12 C -0.144 4.144 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.056 4.056 17 C -0.136 4.136 18 C 0.052 3.948 19 H 0.068 0.932 20 C 0.014 3.986 21 N -0.355 5.355 22 C 0.298 3.702 23 O -0.430 6.430 24 C -0.113 4.113 25 C -0.158 4.158 26 C -0.218 4.218 27 C -0.121 4.121 28 O -0.076 6.076 29 C -0.093 4.093 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.249 0.751 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.161 0.839 45 H 0.214 0.786 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.537 -8.254 -0.626 10.548 hybrid contribution 0.681 1.598 -0.565 1.827 sum 7.218 -6.656 -1.191 9.891 Atomic orbital electron populations 1.69806 1.05855 1.26758 1.51421 1.25492 0.95088 0.97541 0.98046 0.87180 0.81405 0.85061 0.77151 1.21608 1.23293 1.18179 1.19441 0.84791 0.95635 1.41353 0.87019 1.44452 1.07246 1.46571 1.34253 1.20107 0.90426 0.94233 0.90946 1.20432 0.97633 0.95822 0.94433 1.21107 0.96395 0.96963 0.99931 1.20946 0.95272 1.00351 0.98214 1.20917 0.99789 0.98217 0.96125 1.21154 0.96230 0.97427 0.99680 1.19477 0.93508 0.97426 0.95222 1.20954 0.98769 0.95956 0.97884 1.20882 0.89569 0.91214 0.93141 0.93245 1.21220 0.87359 0.93810 0.96208 1.46091 1.31089 1.43940 1.14391 1.20394 0.83532 0.79446 0.86837 1.90656 1.70956 1.65057 1.16310 1.20003 0.96454 0.98272 0.96560 1.19836 0.99314 0.95027 1.01643 1.21644 1.02920 0.96166 1.01040 1.23855 0.94891 0.92493 1.00832 1.84041 1.51356 1.20268 1.51885 1.23904 1.00221 0.92036 0.93158 0.92697 0.93694 0.90468 0.86513 0.86655 0.86748 0.86665 0.90337 0.91585 0.90878 0.92384 0.75064 0.87495 0.88511 0.83899 0.78568 0.78084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 13.97 55.49 0.78 -24.83 16 2 C 0.04 1.06 5.27 -17.43 -0.09 0.96 16 3 Si 0.86 21.45 24.41 -169.99 -4.15 17.30 16 4 H -0.29 -7.01 6.70 56.52 0.38 -6.63 16 5 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 6 H -0.26 -6.42 6.21 56.52 0.35 -6.06 16 7 C -0.28 -6.92 8.35 -15.06 -0.13 -7.04 16 8 H 0.11 2.75 4.86 -52.49 -0.25 2.50 16 9 N -0.60 -12.49 2.46 -166.39 -0.41 -12.90 16 10 C 0.17 3.36 5.14 -5.04 -0.03 3.34 16 11 C -0.08 -1.52 4.22 -104.55 -0.44 -1.96 16 12 C -0.13 -2.11 9.62 -39.47 -0.38 -2.49 16 13 C -0.13 -1.91 10.05 -39.67 -0.40 -2.31 16 14 C -0.13 -1.88 10.05 -39.69 -0.40 -2.28 16 15 C -0.13 -1.95 9.59 -39.43 -0.38 -2.32 16 16 C -0.06 -0.99 5.62 -104.61 -0.59 -1.57 16 17 C -0.10 -1.60 5.21 -28.04 -0.15 -1.75 16 18 C 0.16 2.77 3.02 -67.63 -0.20 2.56 16 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 20 C 0.14 2.44 4.56 -4.04 -0.02 2.42 16 21 N -0.70 -12.17 3.28 -60.29 -0.20 -12.37 16 22 C 0.51 9.15 7.80 -10.99 -0.09 9.06 16 23 O -0.55 -11.79 16.03 5.56 0.09 -11.70 16 24 C -0.07 -1.05 6.22 -29.04 -0.18 -1.23 16 25 C -0.16 -2.35 4.66 -104.74 -0.49 -2.83 16 26 C -0.20 -2.66 10.87 -39.70 -0.43 -3.09 16 27 C -0.05 -0.65 12.09 29.42 0.36 -0.30 16 28 O -0.18 -2.56 10.65 5.71 0.06 -2.50 16 29 C -0.03 -0.38 12.01 29.42 0.35 -0.02 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.72 3.96 -51.93 -0.21 1.52 16 33 H 0.12 1.79 8.05 -52.48 -0.42 1.37 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.49 8.05 -52.48 -0.42 1.07 16 37 H 0.08 1.42 8.01 -51.93 -0.42 1.01 16 38 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.07 1.50 7.89 -51.93 -0.41 1.09 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.41 6.91 7.12 -40.82 -0.29 6.62 16 42 H 0.11 1.52 8.14 -51.92 -0.42 1.09 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.20 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -32.27 370.52 -8.20 -40.47 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.28 Total: 11.81 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.67 Total: -10.86 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.17 Total: -50.11 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.15 Total: -14.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.27 -8.20 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281063128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.718 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds