Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48497 * 109.46913 * 275.36188 * 3 2 1 5 5 H 1.48503 * 109.46771 * 35.35806 * 3 2 1 6 6 H 1.48494 * 109.47198 * 155.35995 * 3 2 1 7 7 C 1.38807 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00204 * 338.38419 * 7 2 1 9 9 N 1.36938 * 120.00005 * 158.38724 * 7 2 1 10 10 C 1.46682 * 121.32924 * 324.29346 * 9 7 2 11 11 C 1.50813 * 109.69056 * 135.69833 * 10 9 7 12 12 C 1.38836 * 117.81749 * 191.35950 * 11 10 9 13 13 C 1.37951 * 120.51188 * 180.46863 * 12 11 10 14 14 C 1.38271 * 119.71778 * 0.07625 * 13 12 11 15 15 C 1.37911 * 119.82147 * 359.76252 * 14 13 12 16 16 C 1.37671 * 122.34267 * 11.45107 * 11 10 9 17 17 C 1.50595 * 122.85956 * 358.57383 * 16 11 10 18 18 C 1.47233 * 121.33202 * 144.31688 * 9 7 2 19 19 H 1.08996 * 109.77576 * 124.54965 * 18 9 7 20 20 C 1.53003 * 109.77362 * 3.80245 * 18 9 7 21 21 N 1.46497 * 109.47412 * 55.00033 * 20 18 9 22 22 C 1.34775 * 120.00175 * 179.97438 * 21 20 18 23 23 O 1.21277 * 119.99653 * 0.02562 * 22 21 20 24 24 C 1.50698 * 120.00062 * 179.97438 * 22 21 20 25 25 C 1.50699 * 109.47314 * 180.02562 * 24 22 21 26 26 C 1.41383 * 126.57650 * 269.71395 * 25 24 22 27 27 C 1.34514 * 106.83719 * 179.83227 * 26 25 24 28 28 O 1.34303 * 108.42175 * 0.42632 * 27 26 25 29 29 C 1.34303 * 109.47776 * 359.72741 * 28 27 26 30 30 H 0.97001 * 120.00260 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.43598 * 255.76529 * 10 9 7 32 32 H 1.08996 * 109.43313 * 15.67779 * 10 9 7 33 33 H 1.08004 * 119.74341 * 0.48587 * 12 11 10 34 34 H 1.07998 * 120.14710 * 180.02562 * 13 12 11 35 35 H 1.07996 * 120.08451 * 179.77861 * 14 13 12 36 36 H 1.08003 * 119.70385 * 179.97438 * 15 14 13 37 37 H 1.09003 * 109.20201 * 259.87188 * 17 16 11 38 38 H 1.09002 * 109.20977 * 140.57313 * 17 16 11 39 39 H 1.09004 * 109.46795 * 294.99469 * 20 18 9 40 40 H 1.09000 * 109.46683 * 175.00024 * 20 18 9 41 41 H 0.97004 * 119.99230 * 0.02562 * 21 20 18 42 42 H 1.09008 * 109.46935 * 300.00378 * 24 22 21 43 43 H 1.09004 * 109.47101 * 59.99990 * 24 22 21 44 44 H 1.07996 * 126.57903 * 359.97438 * 26 25 24 45 45 H 1.08000 * 125.78841 * 180.11426 * 27 26 25 46 46 H 1.07997 * 125.78988 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3843 2.1118 -1.3939 5 1 1.5087 2.6173 0.8102 6 1 3.5997 1.4102 0.5837 7 6 2.0102 -1.2021 -0.0005 8 1 1.5272 -2.1046 0.3436 9 7 3.3074 -1.2436 -0.4374 10 6 3.7656 -0.4015 -1.5475 11 6 5.0973 0.2158 -1.2010 12 6 5.5750 1.2288 -2.0215 13 6 6.7912 1.8256 -1.7616 14 6 7.5407 1.4102 -0.6764 15 6 7.0657 0.4063 0.1412 16 6 5.8380 -0.1925 -0.1147 17 6 5.3721 -1.2635 0.8360 18 6 4.2977 -2.1356 0.1881 19 1 4.7488 -2.7754 -0.5703 20 6 3.6179 -2.9971 1.2543 21 7 2.4881 -3.7129 0.6564 22 6 1.7369 -4.5380 1.4123 23 8 1.9960 -4.6875 2.5876 24 6 0.5744 -5.2738 0.7973 25 6 -0.0951 -6.1225 1.8474 26 6 0.2133 -7.4643 2.1687 27 6 -0.6199 -7.8290 3.1597 28 8 -1.4183 -6.7881 3.4476 29 6 -1.1046 -5.7505 2.6548 30 1 -0.4850 0.8400 0.0004 31 1 3.8708 -1.0105 -2.4453 32 1 3.0366 0.3884 -1.7284 33 1 4.9896 1.5523 -2.8696 34 1 7.1570 2.6134 -2.4035 35 1 8.4953 1.8709 -0.4696 36 1 7.6528 0.0831 0.9881 37 1 4.9621 -0.7950 1.7308 38 1 6.2203 -1.8883 1.1159 39 1 3.2578 -2.3592 2.0615 40 1 4.3344 -3.7162 1.6515 41 1 2.2812 -3.5935 -0.2838 42 1 -0.1422 -4.5544 0.4008 43 1 0.9342 -5.9112 -0.0104 44 1 0.9736 -8.0779 1.7084 45 1 -0.6460 -8.7965 3.6389 46 1 -1.5816 -4.7816 2.6643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281063128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = 24.099814 kcal Electronic energy + Delta-G solvation = -29479.849983 eV Core-core repulsion = 25529.408596 eV Total energy + Delta-G solvation = -3950.441387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.39024 -41.13431 -40.35899 -38.20910 -35.39873 -34.84322 -34.52377 -33.39220 -32.04447 -31.36196 -30.71301 -28.85257 -27.33125 -26.42456 -24.82255 -23.01682 -22.69522 -22.41609 -21.91746 -20.95309 -20.50482 -18.93166 -18.29578 -17.73300 -17.59021 -17.03170 -16.89119 -16.68223 -16.48697 -16.03808 -15.93690 -15.55815 -15.41117 -15.13327 -14.60906 -14.56735 -14.23903 -14.18727 -13.95720 -13.85647 -13.63436 -13.56274 -13.31545 -13.06112 -12.88457 -12.74902 -12.57671 -12.36243 -12.24944 -12.12862 -11.86267 -11.56458 -11.41230 -10.96807 -10.65124 -10.44610 -9.77166 -9.63072 -9.38705 -9.37619 -8.77583 -8.11892 -5.48414 0.48319 0.50350 0.92513 1.25995 1.40465 1.52367 1.66397 1.82350 2.34312 2.44138 2.58005 2.86927 3.10041 3.25117 3.77305 3.88990 3.91561 3.99997 4.09002 4.12902 4.16692 4.24323 4.33784 4.38960 4.42234 4.56572 4.61072 4.64093 4.69369 4.71874 4.82986 4.83498 4.88892 4.89283 4.94506 5.15101 5.17864 5.19847 5.33748 5.35736 5.58577 5.61286 5.64188 5.66278 5.80885 5.97427 6.16792 6.25507 6.30696 6.74781 6.96379 7.43087 7.64139 8.11468 9.03290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.003079 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.314722 B = 9092.245748 C =10140.015234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.016 4.016 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.329 1.329 6 H -0.258 1.258 7 C -0.247 4.247 8 H 0.108 0.892 9 N -0.611 5.611 10 C 0.168 3.832 11 C -0.109 4.109 12 C -0.142 4.142 13 C -0.128 4.128 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.079 4.079 17 C -0.092 4.092 18 C 0.162 3.838 19 H 0.073 0.927 20 C 0.142 3.858 21 N -0.700 5.700 22 C 0.509 3.491 23 O -0.589 6.589 24 C -0.065 4.065 25 C -0.174 4.174 26 C -0.218 4.218 27 C -0.045 4.045 28 O -0.191 6.191 29 C -0.049 4.049 30 H 0.256 0.744 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.415 0.585 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.162 0.838 45 H 0.239 0.761 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -9.295 -2.199 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.212 4.212 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.259 1.259 6 H -0.182 1.182 7 C -0.376 4.376 8 H 0.125 0.875 9 N -0.336 5.336 10 C 0.043 3.957 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.147 4.147 16 C -0.079 4.079 17 C -0.131 4.131 18 C 0.057 3.943 19 H 0.091 0.909 20 C 0.018 3.982 21 N -0.352 5.352 22 C 0.297 3.703 23 O -0.470 6.470 24 C -0.105 4.105 25 C -0.176 4.176 26 C -0.237 4.237 27 C -0.111 4.111 28 O -0.087 6.087 29 C -0.116 4.116 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.253 0.747 42 H 0.124 0.876 43 H 0.145 0.855 44 H 0.180 0.820 45 H 0.255 0.745 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.711 -9.331 -1.160 13.517 hybrid contribution -0.143 1.840 -0.414 1.891 sum 9.568 -7.491 -1.575 12.253 Atomic orbital electron populations 1.69897 1.06918 1.26487 1.55479 1.25930 0.95430 0.99597 1.00216 0.86404 0.79963 0.82811 0.76668 1.21261 1.25929 1.18168 1.19596 0.86079 0.94812 1.37144 0.87523 1.44555 1.06913 1.47047 1.35065 1.20057 0.90926 0.93586 0.91101 1.20360 0.97156 0.97382 0.96121 1.21303 0.97630 0.96998 1.00155 1.21338 0.94254 1.00370 0.98621 1.21378 1.00825 0.97251 0.95059 1.21474 0.95459 0.97296 1.00517 1.19672 0.94680 0.98297 0.95230 1.20905 0.99395 0.96048 0.96795 1.21002 0.89012 0.90826 0.93466 0.90877 1.21173 0.87803 0.93879 0.95387 1.46102 1.31021 1.43588 1.14478 1.20972 0.83887 0.79095 0.86352 1.90631 1.72086 1.66364 1.17940 1.19997 0.94989 0.98392 0.97130 1.20095 0.99538 0.96083 1.01904 1.21962 1.04034 0.95758 1.01921 1.24712 0.93326 0.93103 0.99972 1.84041 1.51985 1.20707 1.51928 1.24125 1.00997 0.92691 0.93817 0.93489 0.92351 0.93239 0.86113 0.83677 0.83254 0.84155 0.92398 0.88095 0.94318 0.90275 0.74710 0.87564 0.85473 0.82041 0.74451 0.77716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.01 13.97 21.65 0.30 -55.71 16 2 C -0.02 -0.86 5.27 84.86 0.45 -0.41 16 3 Si 0.91 46.05 24.41 68.60 1.67 47.72 16 4 H -0.28 -13.98 6.70 99.48 0.67 -13.31 16 5 H -0.33 -17.73 7.11 99.48 0.71 -17.03 16 6 H -0.26 -12.82 6.21 99.48 0.62 -12.20 16 7 C -0.25 -12.20 8.35 84.03 0.70 -11.50 16 8 H 0.11 5.35 4.86 -2.91 -0.01 5.34 16 9 N -0.61 -25.16 2.46 -680.33 -1.67 -26.84 16 10 C 0.17 6.65 5.14 85.63 0.44 7.09 16 11 C -0.11 -3.89 4.22 -19.82 -0.08 -3.97 16 12 C -0.14 -4.50 9.62 22.34 0.21 -4.29 16 13 C -0.13 -3.31 10.05 22.21 0.22 -3.08 16 14 C -0.13 -3.07 10.05 22.20 0.22 -2.84 16 15 C -0.13 -3.49 9.59 22.37 0.21 -3.28 16 16 C -0.08 -2.58 5.62 -19.85 -0.11 -2.69 16 17 C -0.09 -2.88 5.21 29.75 0.15 -2.73 16 18 C 0.16 5.42 3.02 44.78 0.14 5.55 16 19 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 20 C 0.14 4.91 4.56 86.38 0.39 5.31 16 21 N -0.70 -23.95 3.28 -463.06 -1.52 -25.47 16 22 C 0.51 18.15 7.80 87.66 0.68 18.83 16 23 O -0.59 -25.40 16.03 -3.02 -0.05 -25.45 16 24 C -0.07 -1.86 6.22 29.10 0.18 -1.68 16 25 C -0.17 -5.17 4.66 -19.94 -0.09 -5.26 16 26 C -0.22 -5.51 10.87 22.19 0.24 -5.27 16 27 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 28 O -0.19 -5.34 10.65 -2.49 -0.03 -5.37 16 29 C -0.05 -1.46 12.01 66.97 0.80 -0.66 16 30 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.23 3.96 -2.39 -0.01 2.22 16 33 H 0.12 3.57 8.05 -2.91 -0.02 3.55 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.14 3.00 8.05 -2.91 -0.02 2.98 16 37 H 0.06 2.04 8.01 -2.39 -0.02 2.03 16 38 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 39 H 0.04 1.61 7.89 -2.38 -0.02 1.59 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.41 13.64 7.12 -92.71 -0.66 12.98 16 42 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 43 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 45 H 0.24 2.99 8.06 -2.91 -0.02 2.96 16 46 H 0.21 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -72.40 370.52 4.51 -67.90 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.22 Total: 34.29 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.58 Total: -11.08 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -2.89 Total: -108.01 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.82 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.67 Total: 47.72 kcal Total: -72.40 4.51 -67.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281063128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.995 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds