Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00461 * 2 1 4 4 H 1.48506 * 109.46781 * 275.54351 * 3 2 1 5 5 H 1.48505 * 109.47018 * 35.54077 * 3 2 1 6 6 H 1.48499 * 109.47719 * 155.54360 * 3 2 1 7 7 C 1.38813 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00013 * 164.97496 * 7 2 1 9 9 N 1.36939 * 120.00482 * 344.97757 * 7 2 1 10 10 C 1.46677 * 121.33494 * 336.01438 * 9 7 2 11 11 C 1.50813 * 109.67782 * 224.32560 * 10 9 7 12 12 C 1.38844 * 117.80358 * 169.06541 * 11 10 9 13 13 C 1.37953 * 120.50943 * 179.42100 * 12 11 10 14 14 C 1.38265 * 119.71499 * 359.84636 * 13 12 11 15 15 C 1.37913 * 119.82521 * 0.20377 * 14 13 12 16 16 C 1.37666 * 122.34949 * 348.64607 * 11 10 9 17 17 C 1.50604 * 122.86116 * 1.20511 * 16 11 10 18 18 C 1.47227 * 121.33971 * 155.98481 * 9 7 2 19 19 H 1.09002 * 109.77852 * 235.41135 * 18 9 7 20 20 C 1.52995 * 109.77792 * 356.16036 * 18 9 7 21 21 N 1.46502 * 109.47427 * 304.99733 * 20 18 9 22 22 C 1.34770 * 120.00306 * 179.97438 * 21 20 18 23 23 O 1.21281 * 120.00186 * 0.02562 * 22 21 20 24 24 C 1.50704 * 120.00043 * 179.97438 * 22 21 20 25 25 C 1.50698 * 109.46912 * 180.02562 * 24 22 21 26 26 C 1.41386 * 126.57831 * 269.71018 * 25 24 22 27 27 C 1.34512 * 106.84096 * 179.83863 * 26 25 24 28 28 O 1.34302 * 108.41857 * 0.43175 * 27 26 25 29 29 C 1.34299 * 109.47760 * 359.72172 * 28 27 26 30 30 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.44416 * 104.26327 * 10 9 7 32 32 H 1.09004 * 109.43903 * 344.38760 * 10 9 7 33 33 H 1.08001 * 119.74586 * 359.45208 * 12 11 10 34 34 H 1.08003 * 120.14505 * 179.86367 * 13 12 11 35 35 H 1.07997 * 120.08973 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.70481 * 180.02562 * 15 14 13 37 37 H 1.09003 * 109.19737 * 219.62028 * 17 16 11 38 38 H 1.08996 * 109.16757 * 100.30505 * 17 16 11 39 39 H 1.09001 * 109.47231 * 64.99959 * 20 18 9 40 40 H 1.09002 * 109.47586 * 184.99673 * 20 18 9 41 41 H 0.97004 * 119.99448 * 0.02562 * 21 20 18 42 42 H 1.08999 * 109.47042 * 300.00186 * 24 22 21 43 43 H 1.08993 * 109.46746 * 60.00226 * 24 22 21 44 44 H 1.08008 * 126.57754 * 0.02562 * 26 25 24 45 45 H 1.07997 * 125.78770 * 180.11657 * 27 26 25 46 46 H 1.08001 * 125.78945 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3806 2.1139 -1.3936 5 1 1.5112 2.6160 0.8139 6 1 3.6015 1.4091 0.5796 7 6 2.0101 -1.2022 0.0005 8 1 3.0625 -1.2184 -0.2419 9 7 1.3606 -2.3677 0.3084 10 6 0.1387 -2.3686 1.1199 11 6 0.2136 -3.4681 2.1494 12 6 -0.7428 -3.4792 3.1559 13 6 -0.7339 -4.4662 4.1197 14 6 0.2332 -5.4535 4.0806 15 6 1.1843 -5.4430 3.0819 16 6 1.1812 -4.4467 2.1130 17 6 2.2602 -4.4904 1.0632 18 6 1.8602 -3.6702 -0.1623 19 1 1.0760 -4.1886 -0.7140 20 6 3.0774 -3.4621 -1.0655 21 7 2.7265 -2.5472 -2.1547 22 6 3.6490 -2.2153 -3.0795 23 8 4.7695 -2.6743 -3.0104 24 6 3.2879 -1.2746 -4.2002 25 6 4.4868 -1.0696 -5.0898 26 6 5.4759 -0.0685 -4.9532 27 6 6.3577 -0.2531 -5.9522 28 8 5.9521 -1.3009 -6.6879 29 6 4.8182 -1.7999 -6.1696 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7247 -2.5335 0.4754 32 1 0.0367 -1.4070 1.6230 33 1 -1.4998 -2.7094 3.1842 34 1 -1.4794 -4.4678 4.9012 35 1 0.2460 -6.2289 4.8323 36 1 1.9385 -6.2154 3.0530 37 1 2.4269 -5.5250 0.7634 38 1 3.1820 -4.0852 1.4804 39 1 3.8941 -3.0365 -0.4824 40 1 3.3890 -4.4200 -1.4819 41 1 1.8305 -2.1798 -2.2098 42 1 2.4717 -1.7008 -4.7835 43 1 2.9756 -0.3168 -3.7841 44 1 5.5174 0.6956 -4.1911 45 1 7.2391 0.3436 -6.1348 46 1 4.2661 -2.6447 -6.5543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281063129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = 29.856780 kcal Electronic energy + Delta-G solvation = -29376.018370 eV Core-core repulsion = 25425.826623 eV Total energy + Delta-G solvation = -3950.191746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38123 -39.51665 -38.86223 -36.60366 -33.87514 -33.58478 -32.92444 -31.43663 -30.57452 -30.00667 -28.99692 -27.66044 -25.65318 -25.07105 -22.86826 -21.57793 -21.45477 -21.30304 -20.54382 -19.59654 -19.03268 -17.40582 -16.83075 -16.26247 -16.09629 -15.59772 -15.43430 -15.18475 -14.66067 -14.60173 -14.48583 -14.22739 -14.03692 -13.57712 -13.11573 -12.85792 -12.77401 -12.64491 -12.63014 -12.45761 -12.27446 -12.07631 -11.72316 -11.57363 -11.26749 -11.10782 -10.91372 -10.87337 -10.71763 -10.52623 -10.22262 -10.02777 -9.73224 -9.67280 -9.17545 -8.80946 -8.36925 -8.29076 -8.22506 -7.86822 -6.90457 -5.95211 -3.34710 1.84846 1.92289 1.92563 2.73842 3.23495 3.27413 3.27969 3.36667 3.40448 3.97708 4.27028 4.35301 4.91210 4.97892 5.11121 5.19670 5.20105 5.25683 5.34887 5.45167 5.51394 5.55846 5.59941 5.70491 5.79002 5.86387 5.90854 5.92520 6.03138 6.05970 6.17152 6.18970 6.28476 6.31206 6.35308 6.53389 6.60530 6.65015 6.79110 6.92565 6.93650 7.11688 7.14374 7.18333 7.25010 7.47732 7.61686 7.69697 8.19781 8.29046 8.90295 9.03839 9.64816 10.21190 11.13981 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.003219 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.348003 B = 8695.713226 C =10115.941008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.206 3.794 11 C -0.077 4.077 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.090 4.090 18 C 0.158 3.842 19 H 0.042 0.958 20 C 0.137 3.863 21 N -0.696 5.696 22 C 0.510 3.490 23 O -0.558 6.558 24 C -0.074 4.074 25 C -0.150 4.150 26 C -0.196 4.196 27 C -0.051 4.051 28 O -0.181 6.181 29 C -0.036 4.036 30 H 0.255 0.745 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.416 0.584 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.145 0.855 45 H 0.199 0.801 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -5.535 -4.188 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.081 3.919 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.060 0.940 20 C 0.012 3.988 21 N -0.347 5.347 22 C 0.295 3.705 23 O -0.437 6.437 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.215 4.215 27 C -0.118 4.118 28 O -0.077 6.077 29 C -0.103 4.103 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.163 0.837 45 H 0.216 0.784 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.004 -5.798 -4.398 7.873 hybrid contribution -0.179 1.209 0.593 1.358 sum 2.826 -4.589 -3.805 6.597 Atomic orbital electron populations 1.69983 1.05032 1.25661 1.54331 1.24921 0.95276 0.98011 1.01174 0.86375 0.79387 0.83967 0.77754 1.21341 1.21545 1.20487 1.19191 0.92570 0.83763 1.41780 0.90711 1.44074 1.28763 1.00706 1.57692 1.19810 0.88427 0.94616 0.89089 1.21005 0.93178 0.96865 0.96840 1.21116 0.99189 0.98824 0.95071 1.20951 0.99103 0.95664 0.99130 1.20851 0.96550 0.99341 0.99094 1.21126 0.99029 0.98868 0.95544 1.19485 0.96496 0.94400 0.96438 1.20888 0.96953 0.99620 0.95535 1.20703 0.93867 0.88582 0.91749 0.94035 1.21217 0.97472 0.92188 0.87889 1.45933 1.15809 1.47287 1.25697 1.20369 0.85103 0.81831 0.83148 1.90648 1.21273 1.55325 1.76466 1.20007 0.95583 1.01191 0.94657 1.19880 0.99169 0.98343 0.97823 1.21733 0.96316 1.02199 1.01288 1.23870 1.01656 0.91858 0.94437 1.84017 1.35751 1.38975 1.48920 1.23714 0.88433 1.00976 0.97211 0.93461 0.94106 0.88204 0.86467 0.86992 0.87127 0.87091 0.91867 0.90801 0.91681 0.92560 0.74631 0.88469 0.87731 0.83691 0.78439 0.78487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.25 11.01 55.49 0.61 -22.64 16 2 C 0.00 0.11 5.02 -17.43 -0.09 0.03 16 3 Si 0.90 20.40 29.58 -169.99 -5.03 15.38 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -5.80 7.12 -15.06 -0.11 -5.91 16 8 H 0.08 1.84 5.99 -52.49 -0.31 1.53 16 9 N -0.59 -12.82 2.86 -166.39 -0.48 -13.30 16 10 C 0.21 4.49 4.86 -5.04 -0.02 4.47 16 11 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 12 C -0.12 -2.12 9.62 -39.46 -0.38 -2.50 16 13 C -0.13 -1.96 10.05 -39.68 -0.40 -2.36 16 14 C -0.14 -2.04 10.04 -39.69 -0.40 -2.44 16 15 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 16 C -0.07 -1.21 5.76 -104.61 -0.60 -1.81 16 17 C -0.09 -1.52 5.21 -28.04 -0.15 -1.66 16 18 C 0.16 2.91 3.02 -67.64 -0.20 2.70 16 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.14 2.45 4.44 -4.04 -0.02 2.44 16 21 N -0.70 -12.55 3.94 -60.29 -0.24 -12.79 16 22 C 0.51 9.22 7.82 -10.99 -0.09 9.13 16 23 O -0.56 -11.83 16.03 5.56 0.09 -11.74 16 24 C -0.07 -1.11 6.22 -29.03 -0.18 -1.29 16 25 C -0.15 -2.27 4.66 -104.74 -0.49 -2.75 16 26 C -0.20 -2.86 10.87 -39.70 -0.43 -3.29 16 27 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 28 O -0.18 -2.47 10.65 5.72 0.06 -2.41 16 29 C -0.04 -0.48 12.01 29.41 0.35 -0.13 16 30 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 2.46 6.27 -51.93 -0.33 2.13 16 33 H 0.12 1.89 8.05 -52.49 -0.42 1.47 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 37 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 38 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 39 H 0.06 1.29 7.32 -51.93 -0.38 0.91 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.42 7.75 7.34 -40.82 -0.30 7.45 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 45 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -29.36 378.08 -9.48 -38.84 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.37 Total: 13.08 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.83 Total: -10.13 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.10 Total: -48.72 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.15 Total: -14.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.36 -9.48 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281063129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.700 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds