Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00461 * 2 1 4 4 H 1.48506 * 109.46781 * 275.54351 * 3 2 1 5 5 H 1.48505 * 109.47018 * 35.54077 * 3 2 1 6 6 H 1.48499 * 109.47719 * 155.54360 * 3 2 1 7 7 C 1.38813 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00013 * 164.97496 * 7 2 1 9 9 N 1.36939 * 120.00482 * 344.97757 * 7 2 1 10 10 C 1.46677 * 121.33494 * 336.01438 * 9 7 2 11 11 C 1.50813 * 109.67782 * 224.32560 * 10 9 7 12 12 C 1.38844 * 117.80358 * 169.06541 * 11 10 9 13 13 C 1.37953 * 120.50943 * 179.42100 * 12 11 10 14 14 C 1.38265 * 119.71499 * 359.84636 * 13 12 11 15 15 C 1.37913 * 119.82521 * 0.20377 * 14 13 12 16 16 C 1.37666 * 122.34949 * 348.64607 * 11 10 9 17 17 C 1.50604 * 122.86116 * 1.20511 * 16 11 10 18 18 C 1.47227 * 121.33971 * 155.98481 * 9 7 2 19 19 H 1.09002 * 109.77852 * 235.41135 * 18 9 7 20 20 C 1.52995 * 109.77792 * 356.16036 * 18 9 7 21 21 N 1.46502 * 109.47427 * 304.99733 * 20 18 9 22 22 C 1.34770 * 120.00306 * 179.97438 * 21 20 18 23 23 O 1.21281 * 120.00186 * 0.02562 * 22 21 20 24 24 C 1.50704 * 120.00043 * 179.97438 * 22 21 20 25 25 C 1.50698 * 109.46912 * 180.02562 * 24 22 21 26 26 C 1.41386 * 126.57831 * 269.71018 * 25 24 22 27 27 C 1.34512 * 106.84096 * 179.83863 * 26 25 24 28 28 O 1.34302 * 108.41857 * 0.43175 * 27 26 25 29 29 C 1.34299 * 109.47760 * 359.72172 * 28 27 26 30 30 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.44416 * 104.26327 * 10 9 7 32 32 H 1.09004 * 109.43903 * 344.38760 * 10 9 7 33 33 H 1.08001 * 119.74586 * 359.45208 * 12 11 10 34 34 H 1.08003 * 120.14505 * 179.86367 * 13 12 11 35 35 H 1.07997 * 120.08973 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.70481 * 180.02562 * 15 14 13 37 37 H 1.09003 * 109.19737 * 219.62028 * 17 16 11 38 38 H 1.08996 * 109.16757 * 100.30505 * 17 16 11 39 39 H 1.09001 * 109.47231 * 64.99959 * 20 18 9 40 40 H 1.09002 * 109.47586 * 184.99673 * 20 18 9 41 41 H 0.97004 * 119.99448 * 0.02562 * 21 20 18 42 42 H 1.08999 * 109.47042 * 300.00186 * 24 22 21 43 43 H 1.08993 * 109.46746 * 60.00226 * 24 22 21 44 44 H 1.08008 * 126.57754 * 0.02562 * 26 25 24 45 45 H 1.07997 * 125.78770 * 180.11657 * 27 26 25 46 46 H 1.08001 * 125.78945 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3806 2.1139 -1.3936 5 1 1.5112 2.6160 0.8139 6 1 3.6015 1.4091 0.5796 7 6 2.0101 -1.2022 0.0005 8 1 3.0625 -1.2184 -0.2419 9 7 1.3606 -2.3677 0.3084 10 6 0.1387 -2.3686 1.1199 11 6 0.2136 -3.4681 2.1494 12 6 -0.7428 -3.4792 3.1559 13 6 -0.7339 -4.4662 4.1197 14 6 0.2332 -5.4535 4.0806 15 6 1.1843 -5.4430 3.0819 16 6 1.1812 -4.4467 2.1130 17 6 2.2602 -4.4904 1.0632 18 6 1.8602 -3.6702 -0.1623 19 1 1.0760 -4.1886 -0.7140 20 6 3.0774 -3.4621 -1.0655 21 7 2.7265 -2.5472 -2.1547 22 6 3.6490 -2.2153 -3.0795 23 8 4.7695 -2.6743 -3.0104 24 6 3.2879 -1.2746 -4.2002 25 6 4.4868 -1.0696 -5.0898 26 6 5.4759 -0.0685 -4.9532 27 6 6.3577 -0.2531 -5.9522 28 8 5.9521 -1.3009 -6.6879 29 6 4.8182 -1.7999 -6.1696 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7247 -2.5335 0.4754 32 1 0.0367 -1.4070 1.6230 33 1 -1.4998 -2.7094 3.1842 34 1 -1.4794 -4.4678 4.9012 35 1 0.2460 -6.2289 4.8323 36 1 1.9385 -6.2154 3.0530 37 1 2.4269 -5.5250 0.7634 38 1 3.1820 -4.0852 1.4804 39 1 3.8941 -3.0365 -0.4824 40 1 3.3890 -4.4200 -1.4819 41 1 1.8305 -2.1798 -2.2098 42 1 2.4717 -1.7008 -4.7835 43 1 2.9756 -0.3168 -3.7841 44 1 5.5174 0.6956 -4.1911 45 1 7.2391 0.3436 -6.1348 46 1 4.2661 -2.6447 -6.5543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281063129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = 14.527010 kcal Electronic energy + Delta-G solvation = -29376.683118 eV Core-core repulsion = 25425.826623 eV Total energy + Delta-G solvation = -3950.856495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41516 -40.94571 -40.27001 -38.09949 -35.34521 -34.85471 -34.47388 -32.94908 -31.91559 -31.25301 -30.44799 -28.83555 -27.36189 -26.42632 -24.53363 -22.89076 -22.69720 -22.45803 -21.82415 -20.90443 -20.53306 -18.68055 -18.21049 -17.73666 -17.56367 -16.93959 -16.68059 -16.52253 -16.20117 -16.02124 -15.76513 -15.57362 -15.36747 -15.14511 -14.64877 -14.35433 -14.16096 -13.98763 -13.77479 -13.68045 -13.56117 -13.33660 -13.23641 -13.08891 -12.74068 -12.60301 -12.54585 -12.37211 -12.24130 -12.15916 -11.86435 -11.60405 -11.29563 -10.97176 -10.64825 -10.47638 -9.79327 -9.53158 -9.39984 -9.25546 -8.71405 -7.86369 -5.25466 0.59168 0.63201 0.90913 1.40329 1.47018 1.52690 1.62582 1.81157 2.31697 2.46651 2.62106 2.98958 3.31731 3.52054 3.84745 3.85724 3.97354 4.10082 4.13157 4.21279 4.23956 4.25641 4.40325 4.42997 4.52311 4.55234 4.67151 4.69112 4.72537 4.81421 4.83787 4.92625 4.93684 5.13841 5.20854 5.24005 5.27705 5.32731 5.44068 5.53345 5.57714 5.65128 5.70880 5.73706 5.75690 6.02520 6.21509 6.28117 6.34589 6.79921 7.15057 7.43566 7.82377 8.36418 9.21148 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.003219 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.348003 B = 8695.713226 C =10115.941008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.034 4.034 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.287 1.287 7 C -0.228 4.228 8 H 0.066 0.934 9 N -0.600 5.600 10 C 0.222 3.778 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.127 4.127 14 C -0.131 4.131 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.085 4.085 18 C 0.160 3.840 19 H 0.045 0.955 20 C 0.142 3.858 21 N -0.696 5.696 22 C 0.509 3.491 23 O -0.590 6.590 24 C -0.067 4.067 25 C -0.180 4.180 26 C -0.232 4.232 27 C -0.039 4.039 28 O -0.186 6.186 29 C -0.033 4.033 30 H 0.249 0.751 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.142 0.858 45 H 0.237 0.763 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 -7.730 -3.904 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.230 4.230 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.213 1.213 7 C -0.358 4.358 8 H 0.084 0.916 9 N -0.324 5.324 10 C 0.096 3.904 11 C -0.110 4.110 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.084 4.084 17 C -0.124 4.124 18 C 0.054 3.946 19 H 0.063 0.937 20 C 0.018 3.982 21 N -0.347 5.347 22 C 0.297 3.703 23 O -0.472 6.472 24 C -0.107 4.107 25 C -0.182 4.182 26 C -0.251 4.251 27 C -0.106 4.106 28 O -0.081 6.081 29 C -0.101 4.101 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.160 0.840 45 H 0.253 0.747 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.664 -8.010 -4.116 9.723 hybrid contribution -0.362 1.804 0.574 1.927 sum 3.302 -6.207 -3.543 7.873 Atomic orbital electron populations 1.70097 1.05766 1.25402 1.56084 1.25324 0.95689 0.99744 1.02272 0.85705 0.77930 0.81927 0.77622 1.20768 1.22379 1.21264 1.19163 0.92051 0.84616 1.39982 0.91632 1.44208 1.28610 1.01472 1.58070 1.19373 0.87622 0.94214 0.89183 1.20789 0.95544 0.97180 0.97472 1.21231 0.98961 0.99880 0.95540 1.21305 0.99778 0.94661 0.98757 1.21327 0.95134 0.99419 0.99035 1.21436 0.99819 0.98528 0.94769 1.19662 0.96303 0.94872 0.97612 1.20832 0.96290 1.00929 0.94334 1.20829 0.93860 0.87153 0.92772 0.93716 1.21169 0.96465 0.92847 0.87713 1.45981 1.15665 1.47259 1.25756 1.20894 0.84392 0.81598 0.83453 1.90621 1.22484 1.56719 1.77329 1.19975 0.96749 1.00064 0.93902 1.20070 0.99727 0.99520 0.98850 1.21962 0.97558 1.02995 1.02599 1.24551 1.01859 0.91072 0.93069 1.84041 1.35802 1.39222 1.49075 1.24245 0.88191 1.01104 0.96534 0.94142 0.96717 0.91820 0.86722 0.83973 0.83414 0.84242 0.88637 0.91575 0.93840 0.90639 0.75008 0.85573 0.88360 0.84006 0.74699 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.69 11.01 21.65 0.24 -49.45 16 2 C -0.03 -1.76 5.02 84.86 0.43 -1.34 16 3 Si 0.94 43.19 29.58 68.60 2.03 45.22 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.23 -11.19 7.12 84.03 0.60 -10.60 16 8 H 0.07 3.33 5.99 -2.91 -0.02 3.31 16 9 N -0.60 -26.90 2.86 -680.34 -1.95 -28.85 16 10 C 0.22 10.14 4.86 85.64 0.42 10.55 16 11 C -0.11 -4.21 5.82 -19.82 -0.12 -4.32 16 12 C -0.14 -4.69 9.62 22.35 0.22 -4.47 16 13 C -0.13 -3.47 10.05 22.21 0.22 -3.24 16 14 C -0.13 -3.28 10.04 22.20 0.22 -3.06 16 15 C -0.13 -3.53 9.59 22.37 0.21 -3.31 16 16 C -0.08 -2.88 5.76 -19.85 -0.11 -2.99 16 17 C -0.08 -2.72 5.21 29.75 0.16 -2.57 16 18 C 0.16 5.87 3.02 44.78 0.14 6.00 16 19 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 20 C 0.14 5.10 4.44 86.38 0.38 5.49 16 21 N -0.70 -25.34 3.94 -463.07 -1.83 -27.17 16 22 C 0.51 18.47 7.82 87.66 0.69 19.15 16 23 O -0.59 -25.09 16.03 -3.03 -0.05 -25.14 16 24 C -0.07 -1.99 6.22 29.10 0.18 -1.81 16 25 C -0.18 -5.32 4.66 -19.94 -0.09 -5.42 16 26 C -0.23 -6.70 10.87 22.19 0.24 -6.46 16 27 C -0.04 -0.91 12.09 66.97 0.81 -0.10 16 28 O -0.19 -4.75 10.65 -2.43 -0.03 -4.77 16 29 C -0.03 -0.85 12.01 66.97 0.80 -0.05 16 30 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 3.33 6.27 -2.38 -0.01 3.32 16 33 H 0.11 3.82 8.05 -2.91 -0.02 3.80 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 3.03 8.05 -2.91 -0.02 3.01 16 37 H 0.10 2.44 8.11 -2.39 -0.02 2.42 16 38 H 0.07 2.23 8.01 -2.39 -0.02 2.21 16 39 H 0.04 1.75 7.32 -2.39 -0.02 1.73 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.41 15.68 7.34 -92.71 -0.68 15.00 16 42 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.24 3.36 8.06 -2.91 -0.02 3.34 16 46 H 0.23 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -65.83 378.08 4.13 -61.71 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.32 Total: 37.00 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.39 Total: -8.54 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.54 Total: -105.47 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.07 Total: -29.91 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.83 4.13 -61.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281063129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.233 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds