Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28780 * 125.44750 * 2 1 4 4 N 1.28998 * 108.72229 * 179.83191 * 3 2 1 5 5 C 1.33314 * 107.35586 * 0.42702 * 4 3 2 6 6 C 1.50703 * 126.55155 * 179.74014 * 5 4 3 7 7 N 1.46902 * 109.47071 * 269.99709 * 6 5 4 8 8 C 1.46899 * 110.99849 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47099 * 180.02562 * 8 7 6 10 10 C 1.53777 * 113.61238 * 274.13989 * 9 8 7 11 11 C 1.53960 * 87.01699 * 220.04434 * 10 9 8 12 12 N 1.46492 * 113.53934 * 270.81369 * 11 10 9 13 13 C 1.34782 * 119.99780 * 252.49465 * 12 11 10 14 14 O 1.21277 * 120.00253 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99633 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46512 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99702 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99869 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00042 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47146 * 119.99917 * 21 19 17 24 24 H 1.48502 * 109.47030 * 239.99730 * 21 19 17 25 25 C 1.53772 * 113.61549 * 176.52796 * 9 8 7 26 26 N 1.28884 * 125.44412 * 180.31164 * 2 1 3 27 27 H 1.09001 * 109.47060 * 269.69665 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.69154 * 1 2 3 29 29 H 1.09000 * 109.47212 * 149.69236 * 1 2 3 30 30 H 1.08997 * 109.47225 * 30.00040 * 6 5 4 31 31 H 1.08998 * 109.47045 * 149.99723 * 6 5 4 32 32 H 1.00898 * 110.99538 * 56.04829 * 7 6 5 33 33 H 1.09001 * 109.47408 * 300.00563 * 8 7 6 34 34 H 1.08996 * 109.47183 * 60.00309 * 8 7 6 35 35 H 1.08997 * 112.84628 * 45.33142 * 9 8 7 36 36 H 1.08997 * 113.61878 * 334.56189 * 10 9 8 37 37 H 1.09002 * 113.61511 * 105.47029 * 10 9 8 38 38 H 1.09003 * 113.73891 * 139.94325 * 11 10 9 39 39 H 0.97003 * 120.00190 * 72.49579 * 12 11 10 40 40 H 1.08999 * 109.47004 * 299.99247 * 15 13 12 41 41 H 1.08997 * 109.47348 * 60.00322 * 15 13 12 42 42 H 0.97002 * 119.99899 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61943 * 254.53372 * 25 9 8 44 44 H 1.09001 * 113.61320 * 25.43707 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6779 0.0036 5 6 3.4620 -0.6552 -0.0036 6 6 4.6825 -1.5393 -0.0084 7 7 5.0790 -1.8191 -1.3949 8 6 6.2686 -2.6799 -1.4387 9 6 6.6506 -2.9481 -2.8958 10 6 5.9021 -4.1376 -3.5199 11 6 7.2308 -4.5127 -4.2012 12 7 7.4168 -3.8796 -5.5091 13 6 7.3170 -4.6151 -6.6341 14 8 7.0738 -5.8011 -6.5637 15 6 7.5090 -3.9638 -7.9796 16 16 7.3138 -5.2041 -9.2834 17 6 7.5806 -4.1979 -10.7051 18 1 7.7893 -3.1446 -10.5897 19 6 7.5214 -4.7588 -11.9733 20 7 7.2665 -6.0425 -12.1139 21 14 7.8049 -3.6923 -13.4804 22 1 8.0710 -2.2946 -13.0549 23 1 8.9712 -4.2094 -14.2405 24 1 6.5974 -3.7248 -14.3442 25 6 7.9383 -3.7739 -3.0530 26 7 2.2125 -1.0500 -0.0057 27 1 -0.3633 -0.0054 1.0277 28 1 -0.3633 0.8928 -0.5091 29 1 -0.3634 -0.8872 -0.5186 30 1 5.4988 -1.0345 0.5082 31 1 4.4546 -2.4759 0.5005 32 1 5.2333 -0.9633 -1.9065 33 1 7.0958 -2.1826 -0.9322 34 1 6.0522 -3.6244 -0.9397 35 1 6.6310 -2.0485 -3.5109 36 1 5.5634 -4.8723 -2.7894 37 1 5.1197 -3.8428 -4.2193 38 1 7.4281 -5.5846 -4.2179 39 1 7.6117 -2.9310 -5.5655 40 1 6.7655 -3.1778 -8.1121 41 1 8.5082 -3.5320 -8.0350 42 1 7.2248 -6.4345 -13.0002 43 1 8.7974 -3.1859 -3.3759 44 1 8.1572 -4.4089 -2.1946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281985920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 115.407216 kcal Electronic energy + Delta-G solvation = -25296.110565 eV Core-core repulsion = 21413.824923 eV Total energy + Delta-G solvation = -3882.285642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.72840 -40.13519 -38.26058 -36.68200 -35.28523 -33.62959 -32.86473 -32.41486 -30.03597 -29.09944 -27.91332 -25.85423 -25.54580 -25.29285 -23.47482 -22.48435 -22.36372 -20.76505 -19.28448 -17.96375 -17.87956 -17.81404 -16.69016 -16.21856 -15.98799 -15.48427 -15.30942 -14.79590 -14.79470 -14.54554 -14.45418 -14.18041 -13.95462 -13.82337 -13.55487 -13.12023 -13.08525 -12.78157 -12.58178 -12.41797 -12.22666 -12.12101 -11.67218 -11.38182 -11.33710 -11.13334 -11.06199 -11.00553 -10.74636 -10.73327 -10.48394 -10.31884 -9.78588 -9.37293 -9.06488 -8.92204 -8.79473 -8.21440 -6.48285 -6.20599 -3.90808 0.81111 1.51053 1.70219 3.04694 3.10336 3.22430 3.29162 3.33786 3.34199 3.71524 3.73320 3.90109 4.21532 4.30690 4.32487 4.39294 4.48965 4.62353 4.64076 4.78729 4.83838 5.05399 5.14640 5.15444 5.17619 5.24228 5.26564 5.30001 5.37939 5.55392 5.60592 5.61685 5.69639 5.87197 5.90736 5.99243 6.03547 6.14504 6.17213 6.44777 6.76981 6.84437 7.61204 7.75446 7.94828 8.36737 8.65262 9.24901 10.86898 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.001661 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.134286 B =16850.880200 C =18050.875039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.141 5.141 3 N -0.064 5.064 4 N -0.282 5.282 5 C 0.170 3.830 6 C 0.158 3.842 7 N -0.682 5.682 8 C 0.072 3.928 9 C -0.108 4.108 10 C -0.137 4.137 11 C 0.121 3.879 12 N -0.721 5.721 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.140 4.140 26 N -0.290 5.290 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.347 0.653 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 12.359 29.263 32.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.054 5.054 3 N -0.057 5.057 4 N -0.154 5.154 5 C -0.113 4.113 6 C 0.026 3.974 7 N -0.315 5.315 8 C -0.057 4.057 9 C -0.127 4.127 10 C -0.175 4.175 11 C 0.015 3.985 12 N -0.374 5.374 13 C 0.320 3.680 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.179 4.179 26 N -0.141 5.141 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.165 0.835 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.743 10.248 29.187 32.432 hybrid contribution 1.245 2.820 -0.824 3.191 sum -8.498 13.068 28.363 32.365 Atomic orbital electron populations 1.22468 0.68987 1.07105 1.06038 1.50093 1.10856 1.00935 1.43474 1.78975 0.96473 1.14375 1.15915 1.75838 1.10129 1.11254 1.18217 1.25464 0.93289 0.90307 1.02256 1.20066 0.88905 0.96662 0.91759 1.60400 1.37735 1.21827 1.11515 1.22003 0.89647 0.97296 0.96724 1.22574 0.96531 0.98265 0.95318 1.23420 0.97266 0.97178 0.99673 1.21793 0.95991 0.98642 0.82114 1.45697 1.74501 1.12376 1.04843 1.20315 0.75450 0.87011 0.85175 1.90696 1.46110 1.15317 1.86905 1.23535 1.04809 1.05461 0.96611 1.85401 1.93121 1.10380 0.94463 1.22916 1.56081 0.97173 0.92145 0.90881 1.24994 0.94642 0.95358 0.98628 1.70030 1.45758 1.10779 1.23712 0.86117 0.78023 0.79950 0.81398 1.19626 1.20562 1.20584 1.23343 0.96865 0.99001 0.98697 1.74744 1.03319 1.15051 1.20979 0.87994 0.86870 0.86919 0.91704 0.87996 0.83516 0.94612 0.90265 0.89239 0.89339 0.90957 0.88057 0.76877 0.89245 0.89223 0.92249 0.90834 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.20 11.63 59.85 0.70 0.90 16 2 N -0.14 -1.12 4.40 -16.69 -0.07 -1.19 16 3 N -0.06 -0.64 13.25 60.35 0.80 0.16 16 4 N -0.28 -3.07 12.50 32.45 0.41 -2.66 16 5 C 0.17 1.61 7.88 -156.62 -1.23 0.38 16 6 C 0.16 1.09 6.31 -4.97 -0.03 1.06 16 7 N -0.68 -5.11 6.49 -115.06 -0.75 -5.86 16 8 C 0.07 0.46 5.51 -3.82 -0.02 0.44 16 9 C -0.11 -0.82 3.77 -89.81 -0.34 -1.16 16 10 C -0.14 -1.38 7.44 -25.83 -0.19 -1.58 16 11 C 0.12 1.39 4.33 -67.03 -0.29 1.10 16 12 N -0.72 -9.63 5.26 -52.93 -0.28 -9.90 16 13 C 0.53 10.04 7.85 -10.98 -0.09 9.95 16 14 O -0.52 -11.84 15.46 5.56 0.09 -11.75 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.14 -1.09 7.39 -25.92 -0.19 -1.28 16 26 N -0.29 -2.76 12.13 32.47 0.39 -2.37 16 27 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.35 2.67 8.72 -39.29 -0.34 2.32 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.48 7.88 -51.93 -0.41 0.08 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.38 7.46 -51.93 -0.39 0.99 16 39 H 0.40 4.19 8.70 -40.82 -0.36 3.83 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -38.03 391.88 -7.80 -45.83 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.52 Total: 0.89 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.27 Total: -6.14 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 1.23 Total: -47.39 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.03 -7.80 -45.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281985920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.239 kcal (2) G-P(sol) polarization free energy of solvation -38.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds