Wall clock time and date at job start Sat Apr 11 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28780 * 125.44750 * 2 1 4 4 N 1.28998 * 108.72229 * 179.83191 * 3 2 1 5 5 C 1.33314 * 107.35586 * 0.42702 * 4 3 2 6 6 C 1.50703 * 126.55155 * 179.74014 * 5 4 3 7 7 N 1.46902 * 109.47071 * 269.99709 * 6 5 4 8 8 C 1.46899 * 110.99849 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47099 * 180.02562 * 8 7 6 10 10 C 1.53777 * 113.61238 * 274.13989 * 9 8 7 11 11 C 1.53960 * 87.01699 * 220.04434 * 10 9 8 12 12 N 1.46492 * 113.53934 * 270.81369 * 11 10 9 13 13 C 1.34782 * 119.99780 * 252.49465 * 12 11 10 14 14 O 1.21277 * 120.00253 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99633 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46512 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99702 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99869 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00042 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47146 * 119.99917 * 21 19 17 24 24 H 1.48502 * 109.47030 * 239.99730 * 21 19 17 25 25 C 1.53772 * 113.61549 * 176.52796 * 9 8 7 26 26 N 1.28884 * 125.44412 * 180.31164 * 2 1 3 27 27 H 1.09001 * 109.47060 * 269.69665 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.69154 * 1 2 3 29 29 H 1.09000 * 109.47212 * 149.69236 * 1 2 3 30 30 H 1.08997 * 109.47225 * 30.00040 * 6 5 4 31 31 H 1.08998 * 109.47045 * 149.99723 * 6 5 4 32 32 H 1.00898 * 110.99538 * 56.04829 * 7 6 5 33 33 H 1.09001 * 109.47408 * 300.00563 * 8 7 6 34 34 H 1.08996 * 109.47183 * 60.00309 * 8 7 6 35 35 H 1.08997 * 112.84628 * 45.33142 * 9 8 7 36 36 H 1.08997 * 113.61878 * 334.56189 * 10 9 8 37 37 H 1.09002 * 113.61511 * 105.47029 * 10 9 8 38 38 H 1.09003 * 113.73891 * 139.94325 * 11 10 9 39 39 H 0.97003 * 120.00190 * 72.49579 * 12 11 10 40 40 H 1.08999 * 109.47004 * 299.99247 * 15 13 12 41 41 H 1.08997 * 109.47348 * 60.00322 * 15 13 12 42 42 H 0.97002 * 119.99899 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61943 * 254.53372 * 25 9 8 44 44 H 1.09001 * 113.61320 * 25.43707 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6779 0.0036 5 6 3.4620 -0.6552 -0.0036 6 6 4.6825 -1.5393 -0.0084 7 7 5.0790 -1.8191 -1.3949 8 6 6.2686 -2.6799 -1.4387 9 6 6.6506 -2.9481 -2.8958 10 6 5.9021 -4.1376 -3.5199 11 6 7.2308 -4.5127 -4.2012 12 7 7.4168 -3.8796 -5.5091 13 6 7.3170 -4.6151 -6.6341 14 8 7.0738 -5.8011 -6.5637 15 6 7.5090 -3.9638 -7.9796 16 16 7.3138 -5.2041 -9.2834 17 6 7.5806 -4.1979 -10.7051 18 1 7.7893 -3.1446 -10.5897 19 6 7.5214 -4.7588 -11.9733 20 7 7.2665 -6.0425 -12.1139 21 14 7.8049 -3.6923 -13.4804 22 1 8.0710 -2.2946 -13.0549 23 1 8.9712 -4.2094 -14.2405 24 1 6.5974 -3.7248 -14.3442 25 6 7.9383 -3.7739 -3.0530 26 7 2.2125 -1.0500 -0.0057 27 1 -0.3633 -0.0054 1.0277 28 1 -0.3633 0.8928 -0.5091 29 1 -0.3634 -0.8872 -0.5186 30 1 5.4988 -1.0345 0.5082 31 1 4.4546 -2.4759 0.5005 32 1 5.2333 -0.9633 -1.9065 33 1 7.0958 -2.1826 -0.9322 34 1 6.0522 -3.6244 -0.9397 35 1 6.6310 -2.0485 -3.5109 36 1 5.5634 -4.8723 -2.7894 37 1 5.1197 -3.8428 -4.2193 38 1 7.4281 -5.5846 -4.2179 39 1 7.6117 -2.9310 -5.5655 40 1 6.7655 -3.1778 -8.1121 41 1 8.5082 -3.5320 -8.0350 42 1 7.2248 -6.4345 -13.0002 43 1 8.7974 -3.1859 -3.3759 44 1 8.1572 -4.4089 -2.1946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281985920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:45 Heat of formation + Delta-G solvation = 85.091114 kcal Electronic energy + Delta-G solvation = -25297.425170 eV Core-core repulsion = 21413.824923 eV Total energy + Delta-G solvation = -3883.600247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.36123 -41.19513 -39.44655 -37.31418 -35.86726 -34.60302 -34.51101 -33.85717 -30.99599 -30.07271 -28.57864 -27.66900 -26.59114 -26.05439 -24.03640 -23.17452 -23.00916 -22.09159 -20.20180 -19.82059 -18.49174 -18.44312 -17.93315 -17.08780 -17.01044 -16.88263 -16.46003 -16.28963 -15.79975 -15.69629 -15.24046 -15.01323 -14.83643 -14.62706 -14.39388 -14.21383 -14.04559 -13.83198 -13.47051 -13.27975 -13.16258 -13.12633 -12.91748 -12.80790 -12.59957 -12.56787 -12.03947 -12.00024 -11.80932 -11.69264 -11.47462 -11.16209 -11.15203 -11.05995 -10.93405 -10.27623 -9.99946 -9.40286 -8.66995 -8.35104 -6.13167 0.17351 1.01846 1.13424 1.26893 1.41192 1.46939 1.58274 1.60812 2.25697 2.30345 2.79231 2.99048 3.20055 3.31861 3.33374 3.63006 3.82872 3.90989 3.98866 4.04005 4.09713 4.22775 4.28685 4.30817 4.49272 4.50547 4.53515 4.60098 4.67371 4.72524 4.75221 4.81013 4.90067 4.93511 4.97098 5.17401 5.19454 5.27290 5.34571 5.41886 5.71839 5.95271 6.19822 6.30933 6.53440 7.06252 7.27300 7.29411 8.74439 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.001661 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.134286 B =16850.880200 C =18050.875039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.130 5.130 3 N -0.083 5.083 4 N -0.310 5.310 5 C 0.164 3.836 6 C 0.161 3.839 7 N -0.694 5.694 8 C 0.077 3.923 9 C -0.094 4.094 10 C -0.136 4.136 11 C 0.101 3.899 12 N -0.695 5.695 13 C 0.535 3.465 14 O -0.566 6.566 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.119 4.119 26 N -0.307 5.307 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.344 0.656 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.415 0.585 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.085 0.915 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 14.631 30.529 34.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.045 5.045 3 N -0.076 5.076 4 N -0.181 5.181 5 C -0.120 4.120 6 C 0.029 3.971 7 N -0.327 5.327 8 C -0.052 4.052 9 C -0.113 4.113 10 C -0.175 4.175 11 C -0.004 4.004 12 N -0.348 5.348 13 C 0.321 3.679 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.158 4.158 26 N -0.160 5.160 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.252 0.748 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.377 12.580 30.506 34.305 hybrid contribution 1.024 2.116 -1.080 2.587 sum -8.353 14.696 29.426 33.936 Atomic orbital electron populations 1.23016 0.66240 1.08658 1.08065 1.50579 1.12275 1.00111 1.41504 1.78893 0.96703 1.15167 1.16859 1.75789 1.10749 1.12101 1.19441 1.25924 0.94034 0.90216 1.01782 1.20164 0.88437 0.96812 0.91641 1.60391 1.38441 1.21928 1.11923 1.21969 0.89881 0.97600 0.95707 1.22474 0.95420 0.97201 0.96196 1.23417 0.95864 0.98800 0.99397 1.22076 0.98501 0.97837 0.82034 1.45435 1.72255 1.12884 1.04220 1.20073 0.75414 0.86481 0.85919 1.90682 1.48885 1.17391 1.87496 1.23375 1.06567 1.03309 0.94827 1.85582 1.93602 1.15216 0.98049 1.23244 1.56109 0.97490 0.92562 0.89922 1.26138 0.93970 0.96793 1.02300 1.70191 1.46886 1.12974 1.24713 0.84894 0.78081 0.78332 0.76562 1.18049 1.19843 1.19947 1.23279 0.96970 0.98422 0.97088 1.74721 1.03680 1.15825 1.21746 0.85672 0.85070 0.85678 0.90310 0.87095 0.83795 0.92770 0.89682 0.89019 0.88568 0.93354 0.90562 0.74811 0.87417 0.87114 0.91980 0.89667 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 11.63 127.77 1.49 1.70 16 2 N -0.13 -1.93 4.40 -206.71 -0.91 -2.84 16 3 N -0.08 -1.62 13.25 37.02 0.49 -1.13 16 4 N -0.31 -6.58 12.50 -51.26 -0.64 -7.22 16 5 C 0.16 2.96 7.88 138.55 1.09 4.05 16 6 C 0.16 1.95 6.31 85.56 0.54 2.49 16 7 N -0.69 -9.05 6.49 -517.93 -3.36 -12.41 16 8 C 0.08 0.74 5.51 86.30 0.48 1.22 16 9 C -0.09 -1.18 3.77 -10.27 -0.04 -1.22 16 10 C -0.14 -2.61 7.44 31.18 0.23 -2.37 16 11 C 0.10 2.22 4.33 45.58 0.20 2.42 16 12 N -0.70 -17.71 5.26 -439.75 -2.31 -20.02 16 13 C 0.54 20.14 7.85 87.66 0.69 20.83 16 14 O -0.57 -26.87 15.46 -3.02 -0.05 -26.92 16 15 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 16 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 17 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 21 Si 1.00 43.95 29.55 68.60 2.03 45.97 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.12 -1.49 7.39 31.12 0.23 -1.26 16 26 N -0.31 -5.60 12.13 -51.20 -0.62 -6.22 16 27 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.13 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.34 4.72 8.72 -89.70 -0.78 3.94 16 33 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.77 7.88 -2.39 -0.02 0.75 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.69 7.92 -2.39 -0.02 1.67 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 2.10 7.46 -2.39 -0.02 2.08 16 39 H 0.41 7.73 8.70 -92.71 -0.81 6.92 16 40 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 41 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.11 1.06 8.10 -2.39 -0.02 1.04 16 Total: -1.00 -86.20 391.88 -0.35 -86.55 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.55 Total: 16.68 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.45 Total: -6.61 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -7.07 Total: -105.98 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -86.20 -0.35 -86.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281985920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.643 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds