Wall clock time and date at job start Sat Apr 11 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47313 * 126.68907 * 2 1 4 4 C 1.51591 * 103.58824 * 179.83720 * 3 2 1 5 5 O 1.21233 * 127.15617 * 180.23921 * 4 3 2 6 6 N 1.34768 * 105.68567 * 0.32608 * 4 3 2 7 7 C 1.46493 * 124.17631 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47111 * 269.70065 * 7 6 4 9 9 O 1.21276 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99723 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99781 * 175.53924 * 10 8 7 12 12 C 1.53006 * 112.94443 * 302.72148 * 11 10 8 13 13 C 1.53000 * 109.46958 * 304.00042 * 12 11 10 14 14 O 1.42900 * 109.46596 * 175.20898 * 13 12 11 15 15 C 1.53940 * 113.74502 * 171.12496 * 11 10 8 16 16 N 1.47804 * 86.04333 * 222.08585 * 15 11 10 17 17 C 1.36936 * 134.46227 * 204.64874 * 16 15 11 18 18 H 1.08003 * 120.00159 * 179.86864 * 17 16 15 19 19 C 1.38811 * 119.99777 * 359.85729 * 17 16 15 20 20 N 1.31624 * 120.00000 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46827 * 60.00427 * 21 19 17 23 23 H 1.48497 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47063 * 300.00505 * 21 19 17 25 25 C 1.47586 * 91.04708 * 24.55016 * 16 15 11 26 26 C 1.33787 * 111.64194 * 359.65418 * 6 4 3 27 27 O 1.21543 * 123.77042 * 180.23066 * 26 6 4 28 28 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47346 * 299.98435 * 1 2 3 30 30 H 1.08999 * 109.46920 * 59.97748 * 1 2 3 31 31 H 1.08993 * 110.60185 * 298.55990 * 3 2 1 32 32 H 1.09004 * 110.59776 * 61.35946 * 3 2 1 33 33 H 1.08996 * 109.47498 * 149.69922 * 7 6 4 34 34 H 1.09002 * 109.47234 * 29.69543 * 7 6 4 35 35 H 0.96998 * 120.00459 * 355.26850 * 10 8 7 36 36 H 1.08992 * 109.47120 * 64.00474 * 12 11 10 37 37 H 1.09006 * 109.46857 * 184.00556 * 12 11 10 38 38 H 1.08997 * 109.47092 * 295.21171 * 13 12 11 39 39 H 1.09004 * 109.46896 * 55.21502 * 13 12 11 40 40 H 0.96702 * 113.99768 * 180.02562 * 14 13 12 41 41 H 1.09004 * 113.76865 * 336.35666 * 15 11 10 42 42 H 1.09006 * 113.76955 * 107.74721 * 15 11 10 43 43 H 0.96999 * 119.99923 * 179.97438 * 20 19 17 44 44 H 1.09007 * 113.76774 * 221.15499 * 25 16 15 45 45 H 1.08996 * 113.87707 * 89.77264 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3452 1.1813 0.0000 4 6 3.7395 0.5865 0.0042 5 8 4.7921 1.1880 0.0096 6 7 3.5656 -0.7499 -0.0013 7 6 4.6612 -1.7223 -0.0004 8 6 5.0378 -2.0562 -1.4209 9 8 4.4486 -1.5337 -2.3432 10 7 6.0286 -2.9363 -1.6662 11 6 6.3297 -3.3351 -3.0434 12 6 5.1237 -3.9377 -3.7670 13 6 4.5862 -5.1229 -2.9625 14 8 3.3948 -5.6156 -3.5789 15 6 7.6154 -4.1707 -3.1797 16 7 7.8987 -3.3515 -4.3769 17 6 8.6383 -3.5386 -5.5141 18 1 8.6836 -2.7615 -6.2627 19 6 9.3298 -4.7270 -5.7045 20 7 9.2743 -5.6742 -4.7922 21 14 10.3393 -4.9821 -7.2554 22 1 11.3916 -3.9375 -7.3384 23 1 10.9749 -6.3236 -7.2173 24 1 9.4536 -4.8880 -8.4436 25 6 7.0627 -2.2524 -3.8560 26 6 2.2688 -1.0787 -0.0008 27 8 1.8622 -2.2241 -0.0011 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5136 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 2.1832 1.7802 -0.8961 32 1 2.1821 1.7810 0.8955 33 1 4.3420 -2.6289 0.5136 34 1 5.5235 -1.2977 0.5138 35 1 6.5450 -3.3026 -0.9314 36 1 4.3444 -3.1821 -3.8656 37 1 5.4270 -4.2783 -4.7571 38 1 5.3356 -5.9139 -2.9362 39 1 4.3625 -4.8002 -1.9457 40 1 2.9978 -6.3692 -3.1209 41 1 8.3254 -4.0204 -2.3664 42 1 7.4343 -5.2231 -3.3988 43 1 9.7572 -6.5048 -4.9254 44 1 6.4411 -1.7759 -4.6141 45 1 7.6084 -1.5361 -3.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282544765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:48 Heat of formation + Delta-G solvation = -49.219724 kcal Electronic energy + Delta-G solvation = -30970.361580 eV Core-core repulsion = 26605.891556 eV Total energy + Delta-G solvation = -4364.470024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56357 -39.99434 -38.80661 -37.91262 -36.37528 -36.31154 -35.29733 -33.70431 -32.03113 -30.67659 -30.05239 -27.90949 -26.99850 -26.41392 -25.06353 -23.40283 -22.69606 -21.90960 -21.00101 -20.02786 -18.75033 -17.92476 -17.69139 -17.07346 -16.89876 -16.79352 -16.58844 -15.84998 -15.37980 -15.23665 -14.94991 -14.73071 -14.62773 -14.46493 -14.29366 -14.15201 -13.79510 -13.60939 -13.49178 -12.92465 -12.75295 -12.62956 -12.34349 -11.90539 -11.73294 -11.51260 -11.16618 -11.04585 -10.94378 -10.76763 -10.67666 -10.53943 -10.46666 -10.17436 -9.95665 -9.65194 -9.55569 -9.34997 -9.11860 -8.89387 -8.61745 -6.93750 -5.80919 -3.12764 1.42954 1.72821 2.60344 2.74994 2.78502 3.38226 3.41934 3.44482 3.46914 3.75416 4.35792 4.44487 4.52604 4.63865 4.75743 4.80658 4.83392 4.96198 5.03336 5.15218 5.22458 5.26998 5.30084 5.48136 5.55145 5.60020 5.77093 5.83270 5.98448 6.08490 6.31153 6.46100 6.49569 6.62881 6.78472 6.83538 6.84300 7.09658 7.11783 7.28410 7.47086 7.72043 7.84919 7.93391 7.96745 8.40696 9.00972 9.66988 10.53033 11.36698 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002929 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.863704 B = 9558.438558 C =10366.291608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.630 5.630 3 C 0.067 3.933 4 C 0.527 3.473 5 O -0.465 6.465 6 N -0.560 5.560 7 C 0.098 3.902 8 C 0.499 3.501 9 O -0.524 6.524 10 N -0.710 5.710 11 C 0.125 3.875 12 C -0.096 4.096 13 C 0.084 3.916 14 O -0.574 6.574 15 C 0.167 3.833 16 N -0.604 5.604 17 C -0.220 4.220 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.124 3.876 26 C 0.706 3.294 27 O -0.538 6.538 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.035 0.965 40 H 0.372 0.628 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.255 0.745 44 H 0.050 0.950 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.311 9.650 16.182 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.370 5.370 3 C -0.059 4.059 4 C 0.314 3.686 5 O -0.335 6.335 6 N -0.305 5.305 7 C -0.028 4.028 8 C 0.283 3.717 9 O -0.399 6.399 10 N -0.362 5.362 11 C 0.039 3.961 12 C -0.134 4.134 13 C 0.006 3.994 14 O -0.379 6.379 15 C 0.041 3.959 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.002 4.002 26 C 0.408 3.592 27 O -0.411 6.411 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.233 0.767 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.217 0.783 41 H 0.049 0.951 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.131 9.980 14.848 24.088 hybrid contribution 0.946 -0.706 0.031 1.181 sum -15.185 9.273 14.879 23.194 Atomic orbital electron populations 1.21534 0.74034 1.04547 1.01992 1.47390 1.06695 1.05261 1.77671 1.22459 0.86486 0.90391 1.06569 1.20832 0.91519 0.82005 0.74215 1.90840 1.30870 1.65991 1.45755 1.45813 1.07551 1.08839 1.68283 1.21528 0.89982 0.94211 0.97057 1.20598 0.80586 0.79798 0.90734 1.90705 1.52669 1.51103 1.45462 1.46119 1.35046 1.44969 1.10098 1.23012 0.95363 0.98315 0.79382 1.21326 0.96076 0.96290 0.99723 1.22103 0.85886 0.96316 0.95060 1.86491 1.42477 1.52491 1.56398 1.22586 0.87486 0.97187 0.88618 1.45674 1.56690 1.13269 1.17372 1.18956 1.21685 1.00329 0.93800 0.90049 1.24770 1.00524 0.96460 0.98530 1.69773 1.46263 1.06654 1.34298 0.86164 0.79930 0.76985 0.82488 1.21170 1.21537 1.20991 1.22851 0.91138 0.91718 0.94540 1.15748 0.80591 0.85414 0.77421 1.90989 1.76707 1.18666 1.54752 0.89120 0.91424 0.91316 0.85885 0.86054 0.85757 0.85858 0.76673 0.90411 0.89264 0.93355 0.94628 0.78263 0.95088 0.89932 0.93524 0.93173 0.94584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.66 11.33 59.85 0.68 1.34 16 2 N -0.63 -5.51 3.42 -187.94 -0.64 -6.16 16 3 C 0.07 0.45 7.66 -4.31 -0.03 0.42 16 4 C 0.53 5.85 8.32 -10.55 -0.09 5.76 16 5 O -0.47 -6.43 17.75 5.60 0.10 -6.33 16 6 N -0.56 -6.75 2.09 -122.03 -0.26 -7.00 16 7 C 0.10 1.10 6.18 -5.20 -0.03 1.07 16 8 C 0.50 7.69 7.50 -10.98 -0.08 7.61 16 9 O -0.52 -10.16 14.61 5.56 0.08 -10.08 16 10 N -0.71 -10.63 4.52 -49.07 -0.22 -10.85 16 11 C 0.13 2.41 0.68 -134.03 -0.09 2.32 16 12 C -0.10 -1.93 4.68 -26.73 -0.13 -2.05 16 13 C 0.08 1.46 6.86 37.16 0.25 1.71 16 14 O -0.57 -9.89 13.66 -35.23 -0.48 -10.37 16 15 C 0.17 3.75 6.69 -2.85 -0.02 3.73 16 16 N -0.60 -15.47 3.55 -177.49 -0.63 -16.10 16 17 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 18 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -26.74 11.39 55.49 0.63 -26.11 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 C 0.12 2.75 8.02 -2.96 -0.02 2.72 16 26 C 0.71 8.90 8.31 -88.03 -0.73 8.17 16 27 O -0.54 -8.48 16.92 5.33 0.09 -8.39 16 28 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.12 1.16 7.86 -51.93 -0.41 0.75 16 34 H 0.12 1.08 8.00 -51.93 -0.42 0.67 16 35 H 0.40 4.63 8.67 -40.82 -0.35 4.28 16 36 H 0.08 1.68 6.55 -51.93 -0.34 1.34 16 37 H 0.09 2.05 8.02 -51.93 -0.42 1.64 16 38 H 0.05 0.83 7.60 -51.93 -0.39 0.44 16 39 H 0.04 0.57 7.46 -51.93 -0.39 0.18 16 40 H 0.37 4.41 9.12 45.56 0.42 4.82 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 2.03 6.58 -51.93 -0.34 1.69 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.05 1.14 8.10 -51.92 -0.42 0.72 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -39.19 381.84 -6.69 -45.88 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.54 Total: 6.41 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: -0.55 Total: 26.16 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -1.12 Total: -66.22 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.21 Total: -35.17 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.19 -6.69 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282544765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.343 kcal (2) G-P(sol) polarization free energy of solvation -39.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds