Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47313 * 126.68907 * 2 1 4 4 C 1.51591 * 103.58824 * 179.83720 * 3 2 1 5 5 O 1.21233 * 127.15617 * 180.23921 * 4 3 2 6 6 N 1.34768 * 105.68567 * 0.32608 * 4 3 2 7 7 C 1.46493 * 124.17631 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47111 * 269.70065 * 7 6 4 9 9 O 1.21276 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99723 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99781 * 175.53924 * 10 8 7 12 12 C 1.53006 * 112.94443 * 302.72148 * 11 10 8 13 13 C 1.53000 * 109.46958 * 304.00042 * 12 11 10 14 14 O 1.42900 * 109.46596 * 175.20898 * 13 12 11 15 15 C 1.53940 * 113.74502 * 171.12496 * 11 10 8 16 16 N 1.47804 * 86.04333 * 222.08585 * 15 11 10 17 17 C 1.36936 * 134.46227 * 204.64874 * 16 15 11 18 18 H 1.08003 * 120.00159 * 179.86864 * 17 16 15 19 19 C 1.38811 * 119.99777 * 359.85729 * 17 16 15 20 20 N 1.31624 * 120.00000 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46827 * 60.00427 * 21 19 17 23 23 H 1.48497 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47063 * 300.00505 * 21 19 17 25 25 C 1.47586 * 91.04708 * 24.55016 * 16 15 11 26 26 C 1.33787 * 111.64194 * 359.65418 * 6 4 3 27 27 O 1.21543 * 123.77042 * 180.23066 * 26 6 4 28 28 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47346 * 299.98435 * 1 2 3 30 30 H 1.08999 * 109.46920 * 59.97748 * 1 2 3 31 31 H 1.08993 * 110.60185 * 298.55990 * 3 2 1 32 32 H 1.09004 * 110.59776 * 61.35946 * 3 2 1 33 33 H 1.08996 * 109.47498 * 149.69922 * 7 6 4 34 34 H 1.09002 * 109.47234 * 29.69543 * 7 6 4 35 35 H 0.96998 * 120.00459 * 355.26850 * 10 8 7 36 36 H 1.08992 * 109.47120 * 64.00474 * 12 11 10 37 37 H 1.09006 * 109.46857 * 184.00556 * 12 11 10 38 38 H 1.08997 * 109.47092 * 295.21171 * 13 12 11 39 39 H 1.09004 * 109.46896 * 55.21502 * 13 12 11 40 40 H 0.96702 * 113.99768 * 180.02562 * 14 13 12 41 41 H 1.09004 * 113.76865 * 336.35666 * 15 11 10 42 42 H 1.09006 * 113.76955 * 107.74721 * 15 11 10 43 43 H 0.96999 * 119.99923 * 179.97438 * 20 19 17 44 44 H 1.09007 * 113.76774 * 221.15499 * 25 16 15 45 45 H 1.08996 * 113.87707 * 89.77264 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3452 1.1813 0.0000 4 6 3.7395 0.5865 0.0042 5 8 4.7921 1.1880 0.0096 6 7 3.5656 -0.7499 -0.0013 7 6 4.6612 -1.7223 -0.0004 8 6 5.0378 -2.0562 -1.4209 9 8 4.4486 -1.5337 -2.3432 10 7 6.0286 -2.9363 -1.6662 11 6 6.3297 -3.3351 -3.0434 12 6 5.1237 -3.9377 -3.7670 13 6 4.5862 -5.1229 -2.9625 14 8 3.3948 -5.6156 -3.5789 15 6 7.6154 -4.1707 -3.1797 16 7 7.8987 -3.3515 -4.3769 17 6 8.6383 -3.5386 -5.5141 18 1 8.6836 -2.7615 -6.2627 19 6 9.3298 -4.7270 -5.7045 20 7 9.2743 -5.6742 -4.7922 21 14 10.3393 -4.9821 -7.2554 22 1 11.3916 -3.9375 -7.3384 23 1 10.9749 -6.3236 -7.2173 24 1 9.4536 -4.8880 -8.4436 25 6 7.0627 -2.2524 -3.8560 26 6 2.2688 -1.0787 -0.0008 27 8 1.8622 -2.2241 -0.0011 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5136 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 2.1832 1.7802 -0.8961 32 1 2.1821 1.7810 0.8955 33 1 4.3420 -2.6289 0.5136 34 1 5.5235 -1.2977 0.5138 35 1 6.5450 -3.3026 -0.9314 36 1 4.3444 -3.1821 -3.8656 37 1 5.4270 -4.2783 -4.7571 38 1 5.3356 -5.9139 -2.9362 39 1 4.3625 -4.8002 -1.9457 40 1 2.9978 -6.3692 -3.1209 41 1 8.3254 -4.0204 -2.3664 42 1 7.4343 -5.2231 -3.3988 43 1 9.7572 -6.5048 -4.9254 44 1 6.4411 -1.7759 -4.6141 45 1 7.6084 -1.5361 -3.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282544765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = -81.996761 kcal Electronic energy + Delta-G solvation = -30971.782899 eV Core-core repulsion = 26605.891556 eV Total energy + Delta-G solvation = -4365.891343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.39952 -41.48371 -39.72745 -39.41596 -37.74529 -37.26524 -36.16046 -35.32647 -33.87816 -32.12414 -31.01730 -29.17419 -28.43565 -27.16939 -26.88626 -25.08930 -23.55065 -23.39646 -22.35745 -21.05470 -20.28598 -18.98649 -18.77555 -18.64813 -18.32540 -17.77537 -17.61827 -17.15766 -16.74239 -16.56527 -16.31013 -15.92591 -15.85227 -15.59667 -15.45363 -15.22982 -15.12557 -15.02320 -14.53005 -14.40858 -13.78428 -13.46387 -13.38624 -13.37135 -13.22463 -13.15920 -12.88071 -12.79931 -12.62400 -12.30379 -12.12580 -12.07090 -11.80840 -11.63464 -11.42320 -11.35482 -10.98692 -10.88768 -10.54237 -10.11957 -9.95204 -8.98826 -7.94903 -5.28101 0.60512 0.94160 1.44806 1.47969 1.51380 1.53804 1.77038 2.03223 2.21929 2.48445 3.03646 3.09958 3.23341 3.34360 3.58303 3.68147 3.69843 4.08101 4.12960 4.18211 4.20812 4.25498 4.29227 4.34975 4.38390 4.43646 4.65858 4.68029 4.70911 4.79663 4.91459 4.96327 4.96703 5.09686 5.12631 5.18556 5.41507 5.44937 5.64313 5.87100 6.02954 6.29920 6.51341 6.86125 6.88308 6.97611 7.19042 7.54492 8.47436 9.21769 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002929 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.863704 B = 9558.438558 C =10366.291608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.623 5.623 3 C 0.075 3.925 4 C 0.519 3.481 5 O -0.499 6.499 6 N -0.567 5.567 7 C 0.101 3.899 8 C 0.497 3.503 9 O -0.566 6.566 10 N -0.699 5.699 11 C 0.156 3.844 12 C -0.088 4.088 13 C 0.094 3.906 14 O -0.593 6.593 15 C 0.174 3.826 16 N -0.630 5.630 17 C -0.240 4.240 18 H 0.078 0.922 19 C -0.057 4.057 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.122 3.878 26 C 0.695 3.305 27 O -0.580 6.580 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.419 0.581 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.396 0.604 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.252 0.748 44 H 0.035 0.965 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 10.792 17.894 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.362 5.362 3 C -0.049 4.049 4 C 0.309 3.691 5 O -0.371 6.371 6 N -0.312 5.312 7 C -0.024 4.024 8 C 0.283 3.717 9 O -0.444 6.444 10 N -0.353 5.353 11 C 0.068 3.932 12 C -0.127 4.127 13 C 0.016 3.984 14 O -0.401 6.401 15 C 0.049 3.951 16 N -0.357 5.357 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.250 4.250 20 N -0.594 5.594 21 Si 0.806 3.194 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.206 1.206 25 C -0.004 4.004 26 C 0.397 3.603 27 O -0.457 6.457 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.183 0.817 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.246 0.754 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.207 11.155 16.618 26.394 hybrid contribution 1.177 -0.991 -0.499 1.618 sum -16.030 10.164 16.119 24.901 Atomic orbital electron populations 1.21817 0.72127 1.04235 1.04469 1.47661 1.07735 1.04784 1.75990 1.22712 0.83060 0.89612 1.09536 1.21546 0.92839 0.81666 0.73040 1.90823 1.32482 1.66386 1.47381 1.45990 1.07629 1.09486 1.68060 1.21630 0.91203 0.95689 0.93902 1.21351 0.79479 0.78619 0.92254 1.90692 1.53936 1.52532 1.47256 1.45837 1.35571 1.45139 1.08731 1.22237 0.93766 0.95872 0.81285 1.21166 0.95808 0.97095 0.98631 1.21933 0.86121 0.95139 0.95163 1.86430 1.42339 1.53942 1.57376 1.22470 0.88978 0.95958 0.87739 1.45945 1.56850 1.15111 1.17839 1.19263 1.22041 1.00567 0.94962 0.90403 1.25549 1.01750 0.96214 1.01536 1.69924 1.46905 1.06773 1.35777 0.85167 0.78435 0.76794 0.78998 1.20380 1.21455 1.20639 1.22923 0.90923 0.91895 0.94656 1.16036 0.81013 0.85755 0.77511 1.90950 1.77324 1.20410 1.56983 0.90843 0.88091 0.89652 0.83844 0.81700 0.83522 0.83067 0.74297 0.92008 0.92955 0.93203 0.92623 0.75440 0.94215 0.92236 0.93891 0.94637 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.93 11.33 127.77 1.45 2.38 16 2 N -0.62 -9.30 3.42 -866.95 -2.96 -12.27 16 3 C 0.08 0.77 7.66 85.76 0.66 1.42 16 4 C 0.52 10.51 8.32 87.94 0.73 11.25 16 5 O -0.50 -13.09 17.75 -2.88 -0.05 -13.14 16 6 N -0.57 -12.75 2.09 -777.23 -1.63 -14.38 16 7 C 0.10 2.08 6.18 85.64 0.53 2.61 16 8 C 0.50 14.85 7.50 87.66 0.66 15.51 16 9 O -0.57 -21.99 14.61 -3.02 -0.04 -22.04 16 10 N -0.70 -20.23 4.52 -427.54 -1.93 -22.16 16 11 C 0.16 6.07 0.68 5.36 0.00 6.07 16 12 C -0.09 -3.65 4.68 30.60 0.14 -3.51 16 13 C 0.09 3.23 6.86 71.98 0.49 3.73 16 14 O -0.59 -20.10 13.66 -148.98 -2.03 -22.13 16 15 C 0.17 7.92 6.69 86.44 0.58 8.50 16 16 N -0.63 -33.17 3.55 -715.46 -2.54 -35.71 16 17 C -0.24 -13.84 10.70 84.03 0.90 -12.94 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 20 N -0.95 -55.63 11.39 21.65 0.25 -55.38 16 21 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 C 0.12 5.54 8.02 86.48 0.69 6.23 16 26 C 0.69 16.54 8.31 179.44 1.49 18.03 16 27 O -0.58 -17.95 16.92 -3.85 -0.07 -18.01 16 28 H 0.07 0.90 7.67 -2.39 -0.02 0.89 16 29 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.17 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.15 2.39 7.86 -2.39 -0.02 2.37 16 34 H 0.15 2.27 8.00 -2.39 -0.02 2.25 16 35 H 0.42 8.91 8.67 -92.71 -0.80 8.11 16 36 H 0.06 2.76 6.55 -2.39 -0.02 2.74 16 37 H 0.05 2.53 8.02 -2.38 -0.02 2.51 16 38 H 0.05 1.70 7.60 -2.39 -0.02 1.69 16 39 H 0.06 1.69 7.46 -2.39 -0.02 1.68 16 40 H 0.40 8.86 9.12 -74.06 -0.68 8.18 16 41 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.06 3.00 6.58 -2.38 -0.02 2.98 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 45 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -88.33 381.84 -0.62 -88.95 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.43 Total: 21.59 kcal Atomic # 6 Polarization: 47.73 SS G_CDS: 8.79 Total: 56.52 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -8.81 Total: -139.91 kcal Atomic # 8 Polarization: -73.13 SS G_CDS: -2.20 Total: -75.33 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -88.33 -0.62 -88.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282544765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.956 kcal (2) G-P(sol) polarization free energy of solvation -88.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds