Wall clock time and date at job start Sat Apr 11 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 6 6 O 1.42895 * 109.47316 * 300.00507 * 4 3 2 7 7 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 8 8 N 1.46901 * 109.47389 * 185.00253 * 7 4 3 9 9 C 1.46901 * 110.99977 * 180.02562 * 8 7 4 10 10 C 1.50695 * 109.47028 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00017 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99574 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00938 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99463 * 179.97438 * 13 12 10 16 16 N 1.31402 * 120.00153 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99948 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46830 * 90.00276 * 17 15 13 19 19 H 1.48498 * 109.47432 * 210.00356 * 17 15 13 20 20 H 1.48509 * 109.47136 * 330.00692 * 17 15 13 21 21 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99750 * 180.02562 * 21 2 1 23 23 C 1.50702 * 119.99928 * 0.28128 * 21 2 1 24 24 C 1.50700 * 109.46869 * 179.72354 * 23 21 2 25 25 C 1.41379 * 128.00999 * 90.00086 * 24 23 21 26 26 N 1.30168 * 106.39866 * 179.97438 * 25 24 23 27 27 O 1.20924 * 111.60238 * 0.02562 * 26 25 24 28 28 C 1.34042 * 111.56790 * 359.76007 * 27 26 25 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 0.96693 * 114.00024 * 299.99568 * 6 4 3 35 35 H 1.09002 * 109.47498 * 305.00803 * 7 4 3 36 36 H 1.09005 * 109.47199 * 65.00294 * 7 4 3 37 37 H 1.00897 * 110.99602 * 56.04900 * 8 7 4 38 38 H 1.09010 * 109.46937 * 299.99802 * 9 8 7 39 39 H 1.08994 * 109.47179 * 59.99826 * 9 8 7 40 40 H 0.96996 * 119.99695 * 0.02562 * 12 10 9 41 41 H 0.97007 * 120.00328 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46965 * 299.72211 * 23 21 2 43 43 H 1.08994 * 109.46990 * 59.72065 * 23 21 2 44 44 H 1.08007 * 126.79948 * 359.97438 * 25 24 23 45 45 H 1.08005 * 126.77716 * 180.28804 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5001 1.8406 -1.9564 6 8 3.2249 0.7145 -2.1161 7 6 3.2169 3.0357 -1.4426 8 7 3.3572 3.5201 -2.8224 9 6 4.0884 4.7936 -2.8615 10 6 4.2117 5.2583 -4.2897 11 8 3.7368 4.5942 -5.1867 12 7 4.8489 6.4124 -4.5702 13 6 4.9606 6.8354 -5.8695 14 1 4.5385 6.2437 -6.6683 15 6 5.6171 8.0255 -6.1586 16 7 6.1311 8.7452 -5.1868 17 14 5.7700 8.6015 -7.9290 18 1 4.6020 9.4505 -8.2759 19 1 7.0189 9.3892 -8.0872 20 1 5.8105 7.4228 -8.8314 21 6 2.1390 -1.1672 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4723 -0.0053 24 6 2.3649 -3.6176 -0.0103 25 6 2.9306 -4.2843 1.1007 26 7 3.7168 -5.2023 0.6173 27 8 3.7169 -5.1966 -0.5919 28 6 2.9033 -4.2499 -1.0803 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 4.0873 0.5461 -1.7126 35 1 2.6691 3.7712 -0.8533 36 1 4.2052 2.8853 -1.0081 37 1 2.4564 3.6061 -3.2687 38 1 3.5469 5.5414 -2.2819 39 1 5.0826 4.6549 -2.4370 40 1 5.2283 6.9436 -3.8528 41 1 6.5897 9.5758 -5.3886 42 1 0.7588 -2.5340 0.8844 43 1 0.7590 -2.5261 -0.8955 44 1 2.7469 -4.0735 2.1440 45 1 2.7152 -4.0333 -2.1216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284436007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:04 Heat of formation + Delta-G solvation = -47.698861 kcal Electronic energy + Delta-G solvation = -28651.311327 eV Core-core repulsion = 24286.907252 eV Total energy + Delta-G solvation = -4364.404074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.20509 -40.35534 -38.41119 -37.65080 -35.67092 -34.93981 -34.69003 -33.76357 -32.47003 -31.24613 -30.85949 -29.19165 -27.75215 -26.57916 -24.91310 -23.49524 -23.16088 -22.11921 -21.63572 -19.63948 -19.23493 -18.16631 -17.93078 -17.88996 -17.36573 -17.05726 -16.41143 -16.07460 -15.87732 -15.36600 -15.15739 -14.86031 -14.72226 -14.41411 -14.03412 -13.79386 -13.69032 -13.43530 -13.37126 -13.31145 -13.12130 -12.75173 -12.57236 -12.39058 -12.00748 -11.81891 -11.55170 -11.52941 -11.49170 -11.16451 -11.02880 -10.67384 -10.38607 -10.32053 -10.21348 -10.14370 -9.66610 -9.50089 -8.91503 -8.43289 -8.03600 -7.94750 -6.40939 -3.81643 1.21447 1.89399 2.31954 2.64161 2.98099 3.18465 3.27053 3.33498 3.91608 3.94469 4.01960 4.16910 4.25027 4.30493 4.40615 4.50733 4.62465 4.74771 4.77004 4.84340 4.92540 4.98478 5.02779 5.10699 5.20833 5.22355 5.26426 5.28490 5.35081 5.39356 5.53211 5.67430 5.78023 5.94000 5.97284 6.04604 6.26799 6.96970 7.18573 7.56079 7.62151 7.80104 7.88008 7.95635 8.07301 8.62390 9.18879 9.55204 10.06961 10.76841 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.001687 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.055171 B =16596.608597 C =17255.480706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.083 3.917 4 C 0.098 3.902 5 H 0.095 0.905 6 O -0.539 6.539 7 C 0.029 3.971 8 N -0.658 5.658 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.520 3.480 22 O -0.525 6.525 23 C -0.061 4.061 24 C -0.189 4.189 25 C 0.003 3.997 26 N -0.367 5.367 27 O 0.097 5.903 28 C -0.038 4.038 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.376 0.624 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.349 0.651 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.187 0.813 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 -19.847 17.086 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C -0.041 4.041 4 C 0.037 3.963 5 H 0.113 0.887 6 O -0.344 6.344 7 C -0.102 4.102 8 N -0.290 5.290 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.308 3.692 22 O -0.400 6.400 23 C -0.101 4.101 24 C -0.194 4.194 25 C -0.176 4.176 26 N -0.071 5.071 27 O 0.033 5.967 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.224 0.776 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.168 0.832 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.204 0.796 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.597 -21.450 16.493 29.847 hybrid contribution -0.554 2.365 0.286 2.445 sum -13.151 -19.086 16.779 28.614 Atomic orbital electron populations 1.21862 0.79308 1.03765 1.01881 1.47648 1.06882 1.05764 1.74223 1.22234 0.98608 0.85123 0.98139 1.22213 0.95282 0.87313 0.91494 0.88747 1.86573 1.33143 1.58254 1.56419 1.22629 1.00619 0.95907 0.91015 1.59933 1.25467 1.29076 1.14566 1.21688 0.99583 0.90197 0.96723 1.19802 0.84551 0.83304 0.89722 1.90533 1.52107 1.56283 1.47593 1.41863 1.49518 1.19546 1.09200 1.19712 1.33726 1.04919 0.84503 0.87914 1.25264 0.96732 0.96244 0.99752 1.69610 1.37515 1.15172 1.32088 0.85850 0.77575 0.78781 0.82039 1.20451 1.20922 1.19385 1.20387 0.88069 0.84819 0.75928 1.90703 1.13832 1.87029 1.48483 1.19900 0.96164 0.88584 1.05434 1.20703 1.04773 1.01365 0.92523 1.24874 0.96620 0.94324 1.01789 1.73867 1.20048 1.21714 0.91424 1.84823 1.50648 1.45434 1.15807 1.25832 0.93518 0.91273 1.01322 0.92368 0.90685 0.90789 0.89670 0.89330 0.77606 0.94862 0.90648 0.83184 0.94034 0.89660 0.77488 0.91897 0.87627 0.87352 0.79621 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 10.25 59.85 0.61 0.88 16 2 N -0.61 -4.30 2.83 -181.57 -0.51 -4.81 16 3 C 0.08 0.64 5.15 -4.04 -0.02 0.62 16 4 C 0.10 1.01 3.41 -26.73 -0.09 0.92 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 6 O -0.54 -7.22 12.10 -43.92 -0.53 -7.76 16 7 C 0.03 0.33 5.32 -3.83 -0.02 0.31 16 8 N -0.66 -10.71 6.07 -115.06 -0.70 -11.41 16 9 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 10 C 0.44 10.59 7.82 -10.98 -0.09 10.50 16 11 O -0.58 -16.14 15.78 5.54 0.09 -16.05 16 12 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 13 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 14 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 17 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 21 C 0.52 4.56 7.18 -10.98 -0.08 4.48 16 22 O -0.53 -6.70 14.40 -3.13 -0.05 -6.74 16 23 C -0.06 -0.33 4.84 -29.03 -0.14 -0.47 16 24 C -0.19 -1.48 4.82 -104.42 -0.50 -1.98 16 25 C 0.00 0.03 12.16 -17.06 -0.21 -0.18 16 26 N -0.37 -4.05 12.07 30.35 0.37 -3.68 16 27 O 0.10 0.98 11.20 17.17 0.19 1.17 16 28 C -0.04 -0.29 12.26 29.74 0.36 0.08 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 31 H 0.07 0.15 6.43 -51.93 -0.33 -0.18 16 32 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.09 0.79 7.42 -51.93 -0.39 0.41 16 34 H 0.38 4.80 8.45 45.56 0.39 5.19 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 38 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.11 0.32 8.11 -51.93 -0.42 -0.10 16 43 H 0.11 0.37 7.40 -51.93 -0.38 -0.01 16 44 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.22 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -37.36 388.93 -5.60 -42.97 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.52 Total: 14.86 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.44 Total: 7.92 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.18 Total: -58.42 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.30 Total: -29.38 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.36 -5.60 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284436007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.732 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds