Wall clock time and date at job start Sat Apr 11 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.09005 * 109.46685 * 60.00344 * 4 3 2 6 6 O 1.42895 * 109.47316 * 300.00507 * 4 3 2 7 7 C 1.52995 * 109.47427 * 179.97438 * 4 3 2 8 8 N 1.46901 * 109.47389 * 185.00253 * 7 4 3 9 9 C 1.46901 * 110.99977 * 180.02562 * 8 7 4 10 10 C 1.50695 * 109.47028 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00017 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99574 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00938 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99463 * 179.97438 * 13 12 10 16 16 N 1.31402 * 120.00153 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99948 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46830 * 90.00276 * 17 15 13 19 19 H 1.48498 * 109.47432 * 210.00356 * 17 15 13 20 20 H 1.48509 * 109.47136 * 330.00692 * 17 15 13 21 21 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99750 * 180.02562 * 21 2 1 23 23 C 1.50702 * 119.99928 * 0.28128 * 21 2 1 24 24 C 1.50700 * 109.46869 * 179.72354 * 23 21 2 25 25 C 1.41379 * 128.00999 * 90.00086 * 24 23 21 26 26 N 1.30168 * 106.39866 * 179.97438 * 25 24 23 27 27 O 1.20924 * 111.60238 * 0.02562 * 26 25 24 28 28 C 1.34042 * 111.56790 * 359.76007 * 27 26 25 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 0.96693 * 114.00024 * 299.99568 * 6 4 3 35 35 H 1.09002 * 109.47498 * 305.00803 * 7 4 3 36 36 H 1.09005 * 109.47199 * 65.00294 * 7 4 3 37 37 H 1.00897 * 110.99602 * 56.04900 * 8 7 4 38 38 H 1.09010 * 109.46937 * 299.99802 * 9 8 7 39 39 H 1.08994 * 109.47179 * 59.99826 * 9 8 7 40 40 H 0.96996 * 119.99695 * 0.02562 * 12 10 9 41 41 H 0.97007 * 120.00328 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46965 * 299.72211 * 23 21 2 43 43 H 1.08994 * 109.46990 * 59.72065 * 23 21 2 44 44 H 1.08007 * 126.79948 * 359.97438 * 25 24 23 45 45 H 1.08005 * 126.77716 * 180.28804 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5001 1.8406 -1.9564 6 8 3.2249 0.7145 -2.1161 7 6 3.2169 3.0357 -1.4426 8 7 3.3572 3.5201 -2.8224 9 6 4.0884 4.7936 -2.8615 10 6 4.2117 5.2583 -4.2897 11 8 3.7368 4.5942 -5.1867 12 7 4.8489 6.4124 -4.5702 13 6 4.9606 6.8354 -5.8695 14 1 4.5385 6.2437 -6.6683 15 6 5.6171 8.0255 -6.1586 16 7 6.1311 8.7452 -5.1868 17 14 5.7700 8.6015 -7.9290 18 1 4.6020 9.4505 -8.2759 19 1 7.0189 9.3892 -8.0872 20 1 5.8105 7.4228 -8.8314 21 6 2.1390 -1.1672 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4723 -0.0053 24 6 2.3649 -3.6176 -0.0103 25 6 2.9306 -4.2843 1.1007 26 7 3.7168 -5.2023 0.6173 27 8 3.7169 -5.1966 -0.5919 28 6 2.9033 -4.2499 -1.0803 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 4.0873 0.5461 -1.7126 35 1 2.6691 3.7712 -0.8533 36 1 4.2052 2.8853 -1.0081 37 1 2.4564 3.6061 -3.2687 38 1 3.5469 5.5414 -2.2819 39 1 5.0826 4.6549 -2.4370 40 1 5.2283 6.9436 -3.8528 41 1 6.5897 9.5758 -5.3886 42 1 0.7588 -2.5340 0.8844 43 1 0.7590 -2.5261 -0.8955 44 1 2.7469 -4.0735 2.1440 45 1 2.7152 -4.0333 -2.1216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284436007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:04 Heat of formation + Delta-G solvation = -79.191085 kcal Electronic energy + Delta-G solvation = -28652.676932 eV Core-core repulsion = 24286.907252 eV Total energy + Delta-G solvation = -4365.769680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.86025 -40.97926 -40.17083 -38.67770 -36.46940 -36.07077 -35.58728 -35.47952 -33.28120 -33.11837 -31.70935 -29.94316 -28.62618 -27.46287 -26.36078 -24.70806 -23.86650 -22.90878 -22.38121 -21.09001 -20.19941 -19.92046 -18.76915 -18.58388 -18.21524 -17.91506 -17.45483 -17.05370 -16.90332 -16.58360 -16.19552 -16.03164 -15.93266 -15.70878 -15.30239 -15.01270 -14.60113 -14.32658 -14.23575 -13.93857 -13.89911 -13.76351 -13.47187 -13.20812 -13.17344 -13.01168 -12.95446 -12.74760 -12.53674 -12.42993 -12.13875 -12.12970 -11.98712 -11.51797 -11.34511 -11.16430 -10.86854 -10.36321 -10.26056 -10.02745 -9.49134 -9.27145 -8.47696 -5.96590 0.60578 1.28004 1.37446 1.41302 1.54306 1.73104 2.03970 2.13772 2.28997 2.43239 2.90903 3.19391 3.39401 3.44816 3.65620 3.75571 3.79019 3.87991 3.97657 4.17479 4.19508 4.24608 4.32264 4.41213 4.44346 4.49625 4.55155 4.60067 4.67549 4.70722 4.74876 4.80013 4.89470 5.03270 5.12338 5.16661 5.39863 5.54110 5.87498 6.09487 6.38760 6.46005 6.59176 6.87319 7.11564 7.29027 7.31694 7.54905 8.10616 8.69626 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.001687 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.055171 B =16596.608597 C =17255.480706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.610 5.610 3 C 0.089 3.911 4 C 0.101 3.899 5 H 0.096 0.904 6 O -0.562 6.562 7 C 0.032 3.968 8 N -0.679 5.679 9 C 0.066 3.934 10 C 0.436 3.564 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.336 4.336 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.275 1.275 21 C 0.512 3.488 22 O -0.575 6.575 23 C -0.053 4.053 24 C -0.196 4.196 25 C -0.002 4.002 26 N -0.403 5.403 27 O 0.077 5.923 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.375 0.625 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.343 0.657 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.206 0.794 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -19.176 18.111 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C -0.035 4.035 4 C 0.040 3.960 5 H 0.114 0.886 6 O -0.367 6.367 7 C -0.098 4.098 8 N -0.312 5.312 9 C -0.066 4.066 10 C 0.223 3.777 11 O -0.511 6.511 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.817 3.183 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.199 1.199 21 C 0.301 3.699 22 O -0.454 6.454 23 C -0.093 4.093 24 C -0.200 4.200 25 C -0.181 4.181 26 N -0.111 5.111 27 O 0.016 5.984 28 C -0.123 4.123 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.223 0.777 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -14.372 -20.766 17.546 30.751 hybrid contribution -0.069 2.164 -0.001 2.165 sum -14.441 -18.602 17.546 29.367 Atomic orbital electron populations 1.22151 0.76890 1.04943 1.03545 1.47773 1.08370 1.04987 1.73102 1.22104 0.98875 0.86338 0.96166 1.22299 0.94538 0.86109 0.93005 0.88635 1.86540 1.33394 1.59273 1.57506 1.22702 1.01460 0.96961 0.88650 1.59920 1.25259 1.28252 1.17735 1.21531 1.01194 0.91668 0.92219 1.20929 0.82554 0.82069 0.92104 1.90497 1.53453 1.57277 1.49839 1.41932 1.50165 1.20361 1.08564 1.19671 1.35630 1.05918 0.85298 0.90413 1.26051 0.95702 0.95699 1.03828 1.69667 1.37277 1.15408 1.33697 0.84919 0.78229 0.78113 0.77009 1.19422 1.19503 1.19942 1.20988 0.87725 0.86164 0.75020 1.90686 1.16042 1.87801 1.50915 1.20010 0.95561 0.85674 1.08059 1.21045 1.05152 1.01870 0.91939 1.25360 0.95825 0.93699 1.03168 1.73851 1.21767 1.23440 0.92007 1.84772 1.51524 1.46442 1.15680 1.26460 0.92608 0.90499 1.02711 0.90401 0.90229 0.89049 0.86783 0.90775 0.77742 0.92061 0.90529 0.83801 0.91201 0.88218 0.76942 0.91264 0.84617 0.84880 0.77687 0.74124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 10.25 127.77 1.31 1.53 16 2 N -0.61 -7.05 2.83 -846.74 -2.39 -9.44 16 3 C 0.09 1.19 5.15 86.38 0.44 1.63 16 4 C 0.10 1.92 3.41 30.59 0.10 2.02 16 5 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 6 O -0.56 -14.91 12.10 -140.68 -1.70 -16.61 16 7 C 0.03 0.67 5.32 86.30 0.46 1.13 16 8 N -0.68 -21.38 6.07 -517.93 -3.15 -24.53 16 9 C 0.07 2.27 6.17 85.56 0.53 2.79 16 10 C 0.44 21.11 7.82 87.65 0.69 21.80 16 11 O -0.62 -35.51 15.78 -3.08 -0.05 -35.56 16 12 N -0.57 -29.78 5.29 -306.98 -1.62 -31.40 16 13 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 14 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 15 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 16 N -0.92 -49.82 13.05 21.66 0.28 -49.53 16 17 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 C 0.51 8.09 7.18 87.66 0.63 8.72 16 22 O -0.58 -14.56 14.40 5.27 0.08 -14.48 16 23 C -0.05 -0.44 4.84 29.10 0.14 -0.30 16 24 C -0.20 -2.82 4.82 -19.74 -0.10 -2.92 16 25 C 0.00 -0.03 12.16 85.71 1.04 1.01 16 26 N -0.40 -9.14 12.07 -59.28 -0.72 -9.85 16 27 O 0.08 1.59 11.20 71.61 0.80 2.40 16 28 C -0.04 -0.62 12.26 67.17 0.82 0.21 16 29 H 0.08 0.00 8.14 -2.39 -0.02 -0.01 16 30 H 0.08 0.23 8.07 -2.39 -0.02 0.21 16 31 H 0.09 0.00 6.43 -2.39 -0.02 -0.01 16 32 H 0.11 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.07 1.24 7.42 -2.38 -0.02 1.23 16 34 H 0.37 9.81 8.45 -74.06 -0.63 9.19 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.34 11.32 8.43 -89.70 -0.76 10.56 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 41 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 42 H 0.14 0.29 8.11 -2.38 -0.02 0.27 16 43 H 0.13 0.44 7.40 -2.39 -0.02 0.42 16 44 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.24 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -83.94 388.93 -0.15 -84.08 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -1.06 Total: 40.77 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 7.35 Total: 18.88 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -7.60 Total: -124.75 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -0.87 Total: -64.26 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -83.94 -0.15 -84.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284436007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.894 kcal (2) G-P(sol) polarization free energy of solvation -83.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds