Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37013 * 119.99800 * 2 1 4 4 H 1.07993 * 120.00197 * 188.67347 * 3 2 1 5 5 C 1.38938 * 120.00130 * 8.67791 * 3 2 1 6 6 N 1.31445 * 119.99994 * 8.88966 * 5 3 2 7 7 Si 1.86793 * 120.00211 * 188.89374 * 5 3 2 8 8 H 1.48500 * 109.47486 * 89.99838 * 7 5 3 9 9 H 1.48504 * 109.47284 * 209.99607 * 7 5 3 10 10 H 1.48499 * 109.47350 * 329.99528 * 7 5 3 11 11 C 1.34771 * 120.00530 * 179.97438 * 2 1 3 12 12 O 1.21707 * 120.00754 * 185.80414 * 11 2 1 13 13 C 1.46703 * 119.99689 * 5.80989 * 11 2 1 14 14 C 1.41659 * 126.56006 * 45.60093 * 13 11 2 15 15 N 1.30461 * 108.23270 * 180.02562 * 14 13 11 16 16 N 1.39492 * 109.15568 * 359.97438 * 15 14 13 17 17 C 1.35138 * 108.57400 * 0.02562 * 16 15 14 18 18 N 1.37867 * 125.24910 * 180.02562 * 17 16 15 19 19 C 1.47074 * 110.74597 * 18.12446 * 18 17 16 20 20 H 1.09008 * 109.45775 * 69.42911 * 19 18 17 21 21 C 1.52997 * 109.45933 * 189.39250 * 19 18 17 22 22 C 1.52999 * 117.50164 * 246.17919 * 21 19 18 23 23 C 1.52997 * 59.99980 * 252.50966 * 22 21 19 24 24 C 1.53223 * 109.53834 * 309.41409 * 19 18 17 25 25 C 1.46868 * 127.33436 * 180.02562 * 16 15 14 26 26 H 1.09001 * 109.79729 * 75.61303 * 25 16 15 27 27 C 1.53001 * 109.80323 * 314.80883 * 25 16 15 28 28 F 1.39899 * 109.46904 * 179.97438 * 27 25 16 29 29 F 1.39899 * 109.47054 * 299.99783 * 27 25 16 30 30 H 1.09006 * 109.47107 * 175.53704 * 1 2 3 31 31 H 1.08996 * 109.47373 * 295.53398 * 1 2 3 32 32 H 1.08995 * 109.47308 * 55.53848 * 1 2 3 33 33 H 0.96998 * 120.00554 * 180.02562 * 6 5 3 34 34 H 1.07992 * 125.88463 * 0.03829 * 14 13 11 35 35 H 1.00901 * 111.00145 * 254.35333 * 18 17 16 36 36 H 1.09001 * 115.54687 * 31.89053 * 21 19 18 37 37 H 1.08996 * 117.49954 * 359.97438 * 22 21 19 38 38 H 1.09000 * 117.49820 * 145.02158 * 22 21 19 39 39 H 1.08999 * 117.50032 * 252.50891 * 23 22 21 40 40 H 1.09001 * 117.49924 * 107.49068 * 23 22 21 41 41 H 1.09007 * 109.57541 * 187.10809 * 24 19 18 42 42 H 1.09000 * 109.57800 * 307.49338 * 24 19 18 43 43 H 1.08997 * 109.47045 * 60.00407 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1500 1.1866 0.0000 4 1 3.2207 1.1920 -0.1410 5 6 1.4672 2.3829 0.1815 6 7 0.1988 2.3700 0.5262 7 14 2.3517 4.0097 -0.0642 8 1 2.2190 4.4364 -1.4804 9 1 1.7501 5.0390 0.8212 10 1 3.7892 3.8473 0.2712 11 6 2.1390 -1.1671 0.0005 12 8 3.3513 -1.1698 0.1071 13 6 1.4111 -2.4344 -0.1275 14 6 0.3761 -2.7235 -1.0505 15 7 -0.0165 -3.9517 -0.8520 16 7 0.7293 -4.5084 0.1872 17 6 1.6049 -3.5808 0.6334 18 7 2.5107 -3.7685 1.6557 19 6 2.7129 -5.2018 1.9160 20 1 3.2468 -5.6512 1.0785 21 6 3.5329 -5.3767 3.1958 22 6 4.9344 -5.9753 3.0606 23 6 3.8037 -6.8054 3.6716 24 6 1.3537 -5.8891 2.0827 25 6 0.6170 -5.8659 0.7362 26 1 1.0765 -6.5798 0.0526 27 6 -0.8568 -6.2213 0.9427 28 9 -0.9556 -7.5153 1.4651 29 9 -1.4351 -5.3122 1.8351 30 1 -0.3634 -1.0246 -0.0800 31 1 -0.3634 0.4429 0.9272 32 1 -0.3634 0.5815 -0.8473 33 1 -0.2780 3.2052 0.6526 34 1 -0.0197 -2.0443 -1.7909 35 1 2.2167 -3.2870 2.4923 36 1 3.3831 -4.6122 3.9582 37 1 5.2722 -6.2450 2.0600 38 1 5.7071 -5.6046 3.7341 39 1 3.8325 -6.9808 4.7470 40 1 3.3977 -7.6208 3.0729 41 1 1.5028 -6.9215 2.3994 42 1 0.7647 -5.3574 2.8300 43 1 -1.3790 -6.1748 -0.0129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292416579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -0.799302 kcal Electronic energy + Delta-G solvation = -30750.561787 eV Core-core repulsion = 26277.103915 eV Total energy + Delta-G solvation = -4473.457872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.31975 -47.28487 -41.59379 -38.82911 -37.83393 -35.97282 -34.58422 -34.06246 -31.52102 -30.40030 -29.00484 -27.64338 -26.19221 -24.81622 -24.20983 -23.08239 -22.39741 -21.54662 -20.81007 -19.96279 -18.80427 -17.90674 -17.74245 -17.15430 -16.76036 -16.49209 -16.22006 -15.90887 -15.34752 -14.85341 -14.61049 -14.37543 -14.09472 -13.99371 -13.90892 -13.68580 -13.63001 -13.47989 -13.18636 -13.01457 -12.56271 -12.39990 -12.09326 -11.83988 -11.56457 -11.45317 -11.37475 -11.12826 -10.95501 -10.86878 -10.67192 -10.64792 -10.44351 -10.30015 -10.10290 -9.69833 -9.01551 -8.77789 -8.32300 -7.74285 -7.66569 -6.14124 -3.70832 1.85313 2.17295 2.80410 3.17117 3.24549 3.29895 3.35842 3.37989 3.65160 3.79821 3.88091 4.16215 4.23014 4.29797 4.44142 4.49288 4.59926 4.66757 4.76050 4.84538 4.92534 5.01535 5.10294 5.17891 5.27721 5.37783 5.39532 5.47592 5.65303 5.71305 5.82013 5.87344 5.95556 6.16638 6.42179 6.54254 6.84145 6.90355 7.11949 7.39513 7.52657 7.67186 7.86417 8.20354 8.62194 9.30789 9.56954 10.15955 10.78985 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.003594 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.693072 B = 7789.374511 C = 9161.949668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.442 5.442 3 C -0.292 4.292 4 H 0.104 0.896 5 C 0.025 3.975 6 N -0.887 5.887 7 Si 0.929 3.071 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.270 1.270 11 C 0.515 3.485 12 O -0.582 6.582 13 C -0.234 4.234 14 C 0.097 3.903 15 N -0.308 5.308 16 N -0.400 5.400 17 C 0.301 3.699 18 N -0.572 5.572 19 C 0.115 3.885 20 H 0.095 0.905 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.177 4.177 24 C -0.169 4.169 25 C 0.122 3.878 26 H 0.117 0.883 27 C 0.265 3.735 28 F -0.198 7.198 29 F -0.193 7.193 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.192 0.808 35 H 0.369 0.631 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -19.291 3.914 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.160 5.160 3 C -0.420 4.420 4 H 0.121 0.879 5 C -0.177 4.177 6 N -0.528 5.528 7 Si 0.756 3.244 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.194 1.194 11 C 0.302 3.698 12 O -0.467 6.467 13 C -0.250 4.250 14 C -0.091 4.091 15 N -0.128 5.128 16 N -0.189 5.189 17 C 0.078 3.922 18 N -0.205 5.205 19 C 0.006 3.994 20 H 0.113 0.887 21 C -0.168 4.168 22 C -0.202 4.202 23 C -0.214 4.214 24 C -0.209 4.209 25 C 0.018 3.982 26 H 0.135 0.865 27 C 0.210 3.790 28 F -0.179 7.179 29 F -0.174 7.174 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.209 0.791 35 H 0.198 0.802 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.248 -20.050 3.378 20.371 hybrid contribution -0.161 1.250 0.625 1.407 sum -1.409 -18.800 4.003 19.273 Atomic orbital electron populations 1.21911 0.80592 0.96861 1.04316 1.43548 1.05886 1.04463 1.62150 1.19784 0.94190 0.82120 1.45946 0.87869 1.25292 0.95956 0.99648 0.96798 1.70117 1.09020 1.27143 1.46570 0.85872 0.79481 0.80949 0.78090 1.20460 1.21059 1.19427 1.16655 0.86658 0.81722 0.84760 1.90636 1.13576 1.86640 1.55858 1.19969 1.05922 0.96318 1.02816 1.24049 0.94159 0.92652 0.98202 1.76809 1.17830 1.11187 1.06976 1.48527 1.29152 1.10775 1.30414 1.19318 0.88087 0.89412 0.95356 1.57341 1.42773 1.10616 1.09806 1.21339 0.93444 0.86756 0.97862 0.88679 1.22135 0.99054 0.97452 0.98127 1.23005 0.91484 1.03001 1.02714 1.23004 1.03562 0.93499 1.01377 1.22801 0.97981 1.05177 0.94909 1.22396 0.95428 0.83055 0.97345 0.86544 1.21969 0.93831 0.72053 0.91122 1.92997 1.96934 1.38859 1.89097 1.93020 1.85855 1.67164 1.71354 0.95083 0.90001 0.93040 0.92518 0.79134 0.80166 0.86889 0.88473 0.88392 0.88423 0.88671 0.87457 0.89285 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.42 59.85 0.50 2.98 16 2 N -0.44 -11.55 3.02 -123.67 -0.37 -11.92 16 3 C -0.29 -8.21 9.51 -14.98 -0.14 -8.35 16 4 H 0.10 3.04 7.24 -52.49 -0.38 2.66 16 5 C 0.02 0.65 5.37 -17.46 -0.09 0.56 16 6 N -0.89 -23.54 9.73 55.50 0.54 -23.00 16 7 Si 0.93 20.94 29.56 -169.99 -5.03 15.91 16 8 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 C 0.51 13.03 7.47 -12.84 -0.10 12.93 16 12 O -0.58 -16.69 16.73 5.18 0.09 -16.61 16 13 C -0.23 -4.82 5.10 -104.91 -0.54 -5.36 16 14 C 0.10 1.73 9.63 -16.83 -0.16 1.56 16 15 N -0.31 -5.03 12.23 30.94 0.38 -4.66 16 16 N -0.40 -6.01 3.70 -53.13 -0.20 -6.20 16 17 C 0.30 5.30 7.12 -153.79 -1.09 4.20 16 18 N -0.57 -8.90 6.53 -53.14 -0.35 -9.25 16 19 C 0.12 1.28 2.75 -67.50 -0.19 1.09 16 20 H 0.10 1.10 7.87 -51.92 -0.41 0.69 16 21 C -0.15 -1.39 5.38 -90.62 -0.49 -1.88 16 22 C -0.17 -1.43 10.18 -26.73 -0.27 -1.70 16 23 C -0.18 -1.27 9.63 -26.73 -0.26 -1.53 16 24 C -0.17 -1.61 4.50 -26.36 -0.12 -1.72 16 25 C 0.12 1.32 3.44 -67.47 -0.23 1.09 16 26 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 27 C 0.26 2.76 4.89 37.16 0.18 2.95 16 28 F -0.20 -1.94 17.11 2.25 0.04 -1.90 16 29 F -0.19 -2.56 16.51 2.25 0.04 -2.52 16 30 H 0.03 0.63 4.40 -51.93 -0.23 0.40 16 31 H 0.08 2.06 6.57 -51.93 -0.34 1.71 16 32 H 0.05 1.21 7.61 -51.93 -0.40 0.82 16 33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.19 3.05 7.67 -52.49 -0.40 2.64 16 35 H 0.37 5.52 8.53 -39.29 -0.33 5.18 16 36 H 0.11 1.08 8.01 -51.93 -0.42 0.66 16 37 H 0.10 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.59 7.42 -51.93 -0.39 0.21 16 41 H 0.11 0.77 6.91 -51.93 -0.36 0.41 16 42 H 0.09 0.94 7.45 -51.93 -0.39 0.55 16 43 H 0.13 1.18 8.13 -51.93 -0.42 0.76 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.97 358.39 -7.73 -40.70 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.28 Total: 7.23 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.99 Total: 6.81 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.00 Total: -55.03 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.61 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.08 Total: -4.42 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.97 -7.73 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292416579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.903 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds